ID:

dsi_28339

 Coordinate:

3l:8124037-8124129 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_8124031_8124036_+]; five_prime_UTR [3l_8123871_8124030_+]; exon [3l_8123871_8124036_+]; exon [3l_8124130_8124361_+]; CDS [3l_8124130_8124361_+]; intron [3l_8124037_8124129_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------##################################################
GTTCGCGCCGTGTGTCCGTTTGCCGTTCGTGCTCGATAATTAAAATGAAGGTGTGTGCTCCAACCCCCTGCCCCCCAATCAACTAAAAACCCCCACCCCAGTGATTCCACCGATCCTGATGCTCACTTCTCCATACCCTCTAGTACTTCGTTGCCATCGCTCTGCTGTTCGCCGCCGCTCAGGCCGTTCCCAT
**************************************************................................((...............((((....................))))..............))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
.......................................................................................................AATCGACCGATCCTGATG........................................................................ 18 2 4 3.50 14 7 3 0 1 2 1 0 0 0
.......................................................................................................AATCGACCGATCCTGATGT....................................................................... 19 3 12 3.50 42 14 16 1 1 6 0 3 0 1
.......................................................................................................AATCGACCGATCCTGATGC....................................................................... 19 2 3 2.33 7 4 3 0 0 0 0 0 0 0
................................................................................................................................................ACTTCGTTGCCATCGCTCTGC............................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
........................................................................................................TTCCACCGATCCTGATGCTT..................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0
.............................................................................................................................................AGTACCTCGTTGCCA..................................... 15 1 6 1.50 9 0 0 9 0 0 0 0 0 0
.........................................................................................................TCGACCGATCCTGATG........................................................................ 16 1 3 1.00 3 0 0 0 3 0 0 0 0 0
.........................................................................................................TCGACCGATCCTGATGT....................................................................... 17 2 6 0.83 5 0 0 0 2 0 1 0 1 1
........................................................................................................ATCGACCGATCCTGATGC....................................................................... 18 2 4 0.75 3 2 1 0 0 0 0 0 0 0
.......................................................................................................AATCGACCGATCCTGATGG....................................................................... 19 3 15 0.53 8 2 5 0 0 0 0 1 0 0
.........................................................................................................TCGACCGATCCTGAT......................................................................... 15 1 9 0.44 4 0 0 1 1 0 2 0 0 0
........................................................................................ACCACCACCCCAGTGCTTC...................................................................................... 19 2 4 0.25 1 0 1 0 0 0 0 0 0 0
........................................................................................................ATCGACCGATCCTGATG........................................................................ 17 2 10 0.20 2 0 0 1 0 0 0 0 1 0
..........................................................................................................................................TATAGTACCTCGTTGCCA..................................... 18 2 5 0.20 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................CGCTCAGGCCGTCCTCA. 17 2 6 0.17 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................GTACTTCGTTGCCAACGA................................. 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0
.......................................................................................................CATCGACCGATCCTGATG........................................................................ 18 3 20 0.15 3 0 0 0 1 0 1 0 1 0
..........................................................................................................CGACCGATCCTGATG........................................................................ 15 1 7 0.14 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................AGTACCTCGTTGCCAACGA................................. 19 3 20 0.10 2 0 0 2 0 0 0 0 0 0
............................................................................................................................................GAGTACCTCGTTGCCAACG.................................. 19 3 20 0.10 2 0 0 2 0 0 0 0 0 0
..........................................................................................................CGACCGATCCTGATGT....................................................................... 16 2 20 0.10 2 0 0 0 1 0 1 0 0 0
...............................................................................................................................................TACTTCGTTGCCAAC................................... 15 1 11 0.09 1 0 0 1 0 0 0 0 0 0
.......................................................................................................AATCTACCGATCCTGATGT....................................................................... 19 3 16 0.06 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

CAAGCGCGGCACACAGGCAAACGGCAAGCACGAGCTATTAATTTTACTTCCACACACGAGGTTGGGGGACGGGGGGTTAGTTGATTTTTGGGGGTGGGGTCACTAAGGTGGCTAGGACTACGAGTGAAGAGGTATGGGAGATCATGAAGCAACGGTAGCGAGACGACAAGCGGCGGCGAGTCCGGCAAGGGTA
**************************************************................................((...............((((....................))))..............))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body
............................................................GTTGGGTGACGCGAGGTTAGTT............................................................................................................... 22 3 4 0.75 3 2 1 0 0 0 0 0
.............................................................TTGGGTGACGCGAGGTTAGTT............................................................................................................... 21 3 5 0.40 2 1 1 0 0 0 0 0
............................................................GTTGGGTGACGCGAGGTTAGT................................................................................................................ 21 3 6 0.33 2 2 0 0 0 0 0 0
CAAGCCCGGCACAGAG................................................................................................................................................................................. 16 2 18 0.11 2 0 0 2 0 0 0 0
........................................................................................................................................................................AGCGGCGGTGAGTCC.......... 15 1 13 0.08 1 0 0 0 0 1 0 0
..................................................................................TATTTTTGGGCGTGGGG.............................................................................................. 17 2 19 0.05 1 0 0 0 0 0 1 0
..............................................................................................TCGGGTCACTAAGGT.................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0
............................................................................................................CGTCTAGGACTCCGAGTGA.................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1
.............................................................................................................................................................................CGGCGAGTCCTGTAAGGGG. 19 3 20 0.05 1 0 0 0 1 0 0 0

Generated: 04/24/2015 at 10:42 AM