ID:

dsi_283

 Coordinate:

x:19899765-19899829 -

 Confidence:

Known Ortholog

 Class:

Mirtron

 Genomic Locale:

3pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.6

Flybase annnotation

utr3 [utr3_minus_11322]

No Repeatable elements found

Sense Strand Reads

GAACGGAGGCAGTGGATTCCGTGGCGAGGATGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTG

**************************************************(((((((((..((((.((..(((..((((....))))...))).)).))))...)))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024

male body		 M023

head

 M025

embryo

 M053

female body

 O002

Head

 SRR553487

NRT_0-2 hours eggs

 GSM343915

embryo

 SRR553488

RT_0-2 hours eggs

 O001

Testis

 SRR553485

Chicharo_3 day-old ovaries

 SRR553486

Makindu_3 day-old ovaries

 SRR618934

dsim w501 ovaries

 SRR902008

ovaries

 SRR902009

testis
..................................................GTAAGCAGTGTTTGAACTCGATCTTGG........................................................................................ 27 0 1 348.00 348 279 3 15 50 0 0 1 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGC.................................................... 21 0 1 183.00 183 11 137 1 3 25 2 0 1 1 1 1 0 0 0
..................................................GTAAGCAGTGTTTGAACTC................................................................................................ 19 0 1 99.00 99 77 7 11 3 0 0 1 0 0 0 0 0 0 0
....................................................AAGCAGTGTTTGAACTCGATCTTGG........................................................................................ 25 0 1 69.00 69 60 1 5 3 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCTTGGACTCTTGATAAGCTCA................................................................. 23 0 1 65.00 65 63 0 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGCA................................................... 22 0 1 56.00 56 0 6 1 7 11 12 2 6 4 5 2 0 0 0
.............................................................................TTCTTGGACTCTTGATAAGCTC.................................................................. 22 0 1 50.00 50 37 1 11 1 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGCAG.................................................. 23 0 1 48.00 48 1 12 2 13 6 1 10 0 1 1 0 0 0 1
.............................................................................TTCTTGGACTCTTGATAAGCT................................................................... 21 0 1 36.00 36 30 0 5 1 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACTCGATC............................................................................................ 23 0 1 35.00 35 7 6 19 1 0 0 0 0 1 0 0 1 0 0
...............................................................................CTTGGACTCTTGATAAGCTCA................................................................. 21 0 1 33.00 33 28 0 5 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACT................................................................................................. 18 0 1 26.00 26 18 0 2 1 0 0 5 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTT....................................................... 18 0 1 23.00 23 0 5 0 0 14 0 0 0 3 0 0 1 0 0
............................................................................................TAAGCTCAATTAACTGTTTGCAGA................................................. 24 1 1 23.00 23 0 0 0 0 0 6 0 6 0 5 6 0 0 0
..........................................................TGTTTGAACTCGATCTTGG........................................................................................ 19 0 1 21.00 21 18 0 2 1 0 0 0 0 0 0 0 0 0 0
...............................................................................CTTGGACTCTTGATAAGCT................................................................... 19 0 1 20.00 20 19 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................TCTTGGACTCTTGATAAGCTCA................................................................. 22 0 1 19.00 19 12 0 4 2 0 0 1 0 0 0 0 0 0 0
......................................................GCAGTGTTTGAACTCGATCTTGG........................................................................................ 23 0 1 18.00 18 14 0 4 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CTTGGACTCTTGATAAGCTC.................................................................. 20 0 1 18.00 18 16 0 2 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGCAGCG................................................ 25 0 1 17.00 17 0 0 0 0 12 0 0 0 5 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACTCGATCTTGGT....................................................................................... 28 0 1 16.00 16 7 0 1 8 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACTCGATCTTG......................................................................................... 26 0 1 16.00 16 3 0 2 11 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACTCGATCT........................................................................................... 24 0 1 15.00 15 6 3 6 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTT...................................................... 19 0 1 14.00 14 0 1 0 0 13 0 0 0 0 0 0 0 0 0
...............................................................................CTTGGACTCTTGATAAGCTCAATTAACT.......................................................... 28 0 1 13.00 13 12 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................GTGTTTGAACTCGATCTTGG........................................................................................ 20 0 1 13.00 13 10 0 2 0 0 0 1 0 0 0 0 0 0 0
...............................................................................CTTGGACTCTTGATAAGCTCAATTAAC........................................................... 27 0 1 13.00 13 10 0 3 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTG..................................................... 20 0 1 12.00 12 0 8 0 1 3 0 0 0 0 0 0 0 0 0
........................................................................CTTGGTTCTTGGACTCTTGATAAGCT................................................................... 26 0 1 11.00 11 9 0 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCTTGGACTCTTGATAAGC.................................................................... 20 0 1 10.00 10 4 0 6 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TCTTGGACTCTTGATAAGCTC.................................................................. 21 0 1 10.00 10 4 1 5 0 0 0 0 0 0 0 0 0 0 0
........................................................AGTGTTTGAACTCGATCTTGG........................................................................................ 21 0 1 9.00 9 8 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CTTGGACTCTTGATAAGC.................................................................... 18 0 1 8.00 8 4 0 4 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCTTGGACTCTTGATAAGCTCAATTAAC........................................................... 29 0 1 8.00 8 5 0 0 3 0 0 0 0 0 0 0 0 0 0
.................................................................ACTCGATCTTGGTTCTTGGACT.............................................................................. 22 0 1 7.00 7 4 1 2 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGCAA.................................................. 23 1 1 7.00 7 0 0 0 0 0 1 0 6 0 0 0 0 0 0
...................................................TAAGCAGTGTTTGAACTCGATCTTGG........................................................................................ 26 0 1 7.00 7 2 0 0 5 0 0 0 0 0 0 0 0 0 0
................................................................................TTGGACTCTTGATAAGCTC.................................................................. 19 0 1 7.00 7 1 0 6 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGCAGT................................................. 24 1 1 7.00 7 1 0 0 5 0 0 1 0 0 0 0 0 0 0
..............................................................................TCTTGGACTCTTGATAAGCT................................................................... 20 0 1 7.00 7 5 0 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................CTTGGACTCTTGATAAGCTCAA................................................................ 22 0 1 7.00 7 3 0 4 0 0 0 0 0 0 0 0 0 0 0
.........................................................GTGTTTGAACTCGATCTTGGT....................................................................................... 21 0 1 6.00 6 3 0 3 0 0 0 0 0 0 0 0 0 0 0
............................................................................GTTCTTGGACTCTTGATAAGCTC.................................................................. 23 0 1 6.00 6 5 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................GATCTTGGTTCTTGGACTCTTG.......................................................................... 22 0 1 6.00 6 4 0 0 2 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGCAC.................................................. 23 1 1 5.00 5 0 1 0 1 0 1 0 2 0 0 0 0 0 0
.............................................................................TTCTTGGACTCTTGATAAGCTCAA................................................................ 24 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TCTTGGACTCTTGATAAGCTCAATTAAC........................................................... 28 0 1 5.00 5 3 0 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................TTGGACTCTTGATAAGCT................................................................... 18 0 1 5.00 5 3 0 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................GTTCTTGGACTCTTGATAAGCT................................................................... 22 0 1 5.00 5 2 0 3 0 0 0 0 0 0 0 0 0 0 0
..................................................TTAAGCAGTGTTTGAACTCGATCTTGG........................................................................................ 27 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCTTGGACTCTTGATAAGCC................................................................... 21 1 1 4.00 4 3 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................AGCAGTGTTTGAACTCGATCTTGG........................................................................................ 24 0 1 4.00 4 3 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................TCTTGGACTCTTGATAAGC.................................................................... 19 0 1 4.00 4 1 0 2 1 0 0 0 0 0 0 0 0 0 0
..............................................................................TCTTGGACTCTTGATAAGCTCAATTAACT.......................................................... 29 0 1 4.00 4 3 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGTGTTTGAACTCGATCTTGG........................................................................................ 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACTCGAT............................................................................................. 22 0 1 3.00 3 1 0 0 2 0 0 0 0 0 0 0 0 0 0
..................................................................CTCGATCTTGGTTCTTGGACTCTTGAT........................................................................ 27 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGTAGTGTTTGAACTCGATCTTGG........................................................................................ 27 1 1 3.00 3 2 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACTCG............................................................................................... 20 0 1 3.00 3 0 0 0 1 0 1 1 0 0 0 0 0 0 0
........................................................................CTTGGTTCTTGGACTCTTGATAAGCTCA................................................................. 28 0 1 3.00 3 0 0 1 2 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACTCGATCTT.......................................................................................... 25 0 1 3.00 3 2 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................CTCGGAGAATCGACGACT................... 18 0 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TTGGTTCTTGGACTCTTGA......................................................................... 19 0 1 3.00 3 0 1 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TTCTCGGAGAATCGACGAC.................... 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCTTGGACTCTTGATAAGCTCAAT............................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CGGACGGCATCTTCTCGGA............................... 19 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACTCGATCTTGGG....................................................................................... 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACC................................................................................................. 18 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CGGACGGCATCTTCTCGGAG.............................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGCAGAA................................................ 25 2 1 2.00 2 0 0 0 0 0 1 0 0 0 1 0 0 0 0
...........................................................GTTTGAACTCGATCTTGG........................................................................................ 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................ATCGACGACTGCTCCAGG........... 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
.............................ATGACAACGAATCTGTACAGT................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................GATCTTGGTTCTTGGACTCTTGA......................................................................... 23 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................TTGGTTCTTGGACTCTTGATAAGCT................................................................... 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................CGGAGAATCGACGACTGCTC............... 20 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................ACTCGATCTTGGTTCTTGGAC............................................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................GTTCTTGGACTCTTGATAAGCTCA................................................................. 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................GTTTGAACTCGATCTTGGT....................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAGCAGTGTTTGAACTCGATCTTGGT....................................................................................... 26 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CTTCTCGGAGAATCGACGA..................... 19 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGCAAA................................................. 24 2 1 2.00 2 0 0 0 0 0 1 0 1 0 0 0 0 0 0
..........................................................TGTTTGAACTCGATCTTGGT....................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CTTGGTTCTTGGACTCTTGATAAGCC................................................................... 26 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACTCAATCTTGG........................................................................................ 27 1 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................ACTCGATCTTGGTTCTTGGACTCTTGATA....................................................................... 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................TCGATCTTGGTTCTTGGACTCT............................................................................ 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
........................................................AGTGTTTGAACTCGATCTTGGT....................................................................................... 22 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................TCGATCTTGGTTCTTGGACTCTTGAT........................................................................ 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TCTTGGACTCTTGATAAGCTCACTTAACT.......................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CGTGGCGAGGATGACAACGAATCTGTA....................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................ACTCGATCTTGGTTCTTGGACTCT............................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAGGCAGTGTTTGAACTCGATCTTGG........................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CTTGGTTCTTGGACTCTTGATAATCTCA................................................................. 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGCAGTGCTTGAACTCGATCTTGGT....................................................................................... 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGCG................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCTTGGACTCTTGATAACCTC.................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................GGTTCTGGACTCTTGATAAGCTC.................................................................. 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................CTTGGTTCTTGGACTCTTGATAAG..................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGCAGTA................................................ 25 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................GATCTTGGTTCTTGGACT.............................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGTAGA................................................. 24 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................GTAAGCAGAGTTTGAACTCGATCTTG......................................................................................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................GCAGTGTTTGAACTCGATCTTG......................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................CTTGGACTCTTGATAAG..................................................................... 17 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................CTTGGACTCTTGATAATCTCAATTAACT.......................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................GTTCTTGGACTCTTGATAAGCC................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................GGAAGCAGTGTTTGAACTCGATCTTGG........................................................................................ 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................GTGTTTGAACTCGATCTTGGTT...................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGCAGTAA............................................... 26 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................GGTGTTTGAACTCGATCTTGGT....................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGA.................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GAACTCGATCTTGGTTCTTGGACTC............................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGCT................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAGCAGTGTTTGAACTCGA.............................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAGCAGTGTTTGAACTCGATCTT.......................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................TCTTGGACTCTTGATAAGCTCAA................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TTGGTTCTTGGACTCTTGG......................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCTTGATAAGCTCAATTAACTGTT....................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTTCATA................................................. 24 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGTA................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACTCGATCC........................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................TGTAAGCAGTGTTTGAACTCGATCTTG......................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................TCTTGGTTCTTGGACTCTTG.......................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CTTGGTTCTTGGACTCTTGG......................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGCACT................................................. 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCTTGGACTCTTGATAACCTCA................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ATCTTCTCGGAGAATCGACGACT................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CTTCTCGGAGAATCGACGACTGC................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACTCGATCG........................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................GATAAGCTCAATTAACTGTTTGCAG.................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................AGTGTTTGAACTCGATCTTGGG....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TTCTCGGAGAATCGACGACTGC................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACTCGGTCTTGG........................................................................................ 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................CTTGGTTCTTGGACTCTTGATAAGC.................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................CTTGGACTCTTGATCAGCT................................................................... 19 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACTCCATCTTGG........................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGTAA.................................................. 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................TAAGCAGTGTTTGAACTCGATCTTG......................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................ATAAGCAGTGTTTGAACTCGATCTTGG........................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................AGTGTTTGAACTCGATCTTGGTT...................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................GACTCTTGATAAGCTCAATTAACT.......................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................GCTCAATTAACTGTTTGC.................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CTTGGACTCTTGATAAGCTCAAT............................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................TCGATCTTGGTTCTTGGAC............................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCTTGGACTCTTGATAGGCT................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TTGGACTCTTGATAAGCTCAATTAAC........................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................CGATCTTGGTTCTTGGACTCTTGAT........................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................CAATTAACTGTTTGCAGT................................................. 18 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CTTCTCGGAGAATCGACGG..................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................AACTCGATCTTGGTTCTTGGAC............................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................CTCAATTAACTGTTTGCAG.................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................TCTTGGACTCTTGATAAGCTCG................................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGCAGTAAA.............................................. 27 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................CGAGGATGACAACGAATCT.......................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................TAAGCAGTGTTTGAACTCGATC............................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................CGATCTTGGTTCTTGGACTC............................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TTGGACTCTTGATAAGCTCAA................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................ACTCGATCTTGGTTCTTG.................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GACGGCATCTTCTCGGAGAATC.......................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGCAGC................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................CGATCTTGGTTCTTGGACTCTTGATAAG..................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCTTGGACTCTTGATAAGCTCT................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................GTTTGAACTCGATCTTGGTT...................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAGCAGTGTTTGAACTCGATC............................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TCTTGGACTCTTGATAAGCC................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAGCAGTGTTTGAACTCGATCTTG......................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................AGGCAGTGTTTGAACTCGATCTTGG........................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACTCGATCGTGG........................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TCCTGGACTCTTGATAAGCT................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TCTTGATAAGCTCAATTAACTGTTT...................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................GGACTCTTGATAAGCTCA................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................TCTTGGACTCTTGATAAGCG................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................ATGACAACGAATCTGTACAGTC.................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.AACGGAGGCAGTGGATTCCGTGG............................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................ACTCGATCTTGGTTCTTGGACTCTTGAT........................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................GTTCTTGGACTCTTGATAAGC.................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................ATCTTGGTTCTTGGACTC............................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTACGCAGTGTTTGAACTCGATCTTGG........................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CTTGGACTCTTGATAAGCTCC................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CTTGGACTCTTGATAAGCC................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TCTTGGTTCTTGGACTCTTGATAAGCT................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCTTGGACTCTTGATAAGCTCAATT.............................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CTTGGACCCTTGATAAGCT................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCCCAATTAACTGTTTGC.................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGCAGTT................................................ 25 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................TTAGCTCAATTAACTGTTTGCAGT................................................. 24 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCTTGGACTCTTGATAAGCTCG................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCTTGGACTCTTGATAAGCG................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TTGATAAGCTCAATTAACTGTTT...................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAGCTCAATTAAATGTTTGCTG.................................................. 23 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................GTAAGCAGTGGTTGAACTCGATCTTG......................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TTTGAACTCGATCTTGGTTCTTGGACT.............................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGACAACGAATCTGTACAGT................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................GTGTTTGAACTCGATCTTG......................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................AAGCTCAATTAACTGTTTG..................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................TTCTCGGAGAATCGACGACTGCTCC.............. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGCAGTGTTTGAACTCGATCTCGG........................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................ACTCTTGATAAGCTCAATTAACTGT........................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................TTGGACTCTTGATAAGCTCA................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTAAGCAGTGTTTGAACTCGATCTTGG........................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CTTGGACTCTTGATAAGCG................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAGCAGTGTTTGAACTCGATCTT.......................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................TACCTCAATTAACTGTTTGC.................................................... 20 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...TGGAGGTAGTCGATTCCGTGGC............................................................................................................................................ 22 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................TTTTTCAACTCGATCTTGGATC..................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................AGCAGTGTTTGACCTCGTTG............................................................................................ 20 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................GTAAGCAGTGTTTGAA................................................................................................... 16 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................TTGGACTCTTGATAAGCC................................................................... 18 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........GTGGATTCCTTGGCGA.......................................................................................................................................... 16 1 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................TGTTTGAACTCCATC............................................................................................ 15 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................GTACGCGATTTTGGTTCT.................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........GAGAATCCCGTGGCGAGGA....................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................ATAACAACGAATCTGTT....................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............ATCCCGTGGCGAGGAG...................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

CTTGCCTCCGTCACCTAAGGCACCGCTCCTACTGTTGCTTAGACATGTCACATTCGTCACAAACTTGAGCTAGAACCAAGAACCTGAGAACTATTCGAGTTAATTGACAAACGTCGCCTGCCGTAGAAGAGCCTCTTAGCTGCTGACGAGGTCCCTAACGTCGAC

**************************************************(((((((((..((((.((..(((..((((....))))...))).)).))))...)))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024

male body		 SRR618934

dsim w501 ovaries

 SRR553487

NRT_0-2 hours eggs

 SRR902009

testis

 SRR553488

RT_0-2 hours eggs

 SRR553486

Makindu_3 day-old ovaries
...........................CCTACTGCTGCTTGGACAAGTCA................................................................................................................... 23 3 1 2.00 2 2 0 0 0 0 0
..................GCCACGGCTCCTACTG................................................................................................................................... 16 2 20 0.75 15 0 15 0 0 0 0
.....................ACCGCTCCTACTGTTGTTTAAT.......................................................................................................................... 22 3 3 0.33 1 0 0 1 0 0 0
..............................................................................................................TCGTCGCCTGCCGTAG....................................... 16 1 3 0.33 1 0 0 0 1 0 0
................AAGCCACGGCTCCTACTG................................................................................................................................... 18 2 4 0.25 1 0 1 0 0 0 0
.........................................................................................................................CGTAGAAGTGCCTCTT............................ 16 1 6 0.17 1 0 0 0 0 1 0
.................AGCCACGGCTCCTACTG................................................................................................................................... 17 2 17 0.12 2 0 2 0 0 0 0
.................AGGCACCGCTCCGATT.................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0
............AGCTAAGGCACCGCGCC........................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 1
...........................CCTACTGCTGCTTGGACAA....................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSim2 x:19899715-19899879 - dsi_283 candidate-rescued GAACGGAGGCAGTGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-TTC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTG
droSec2 scaffold_8:3474369-3474533 - dse_273 confident GAACGGAGGCAGTGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-TTC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTG
dm3 chrX:21167362-21167526 - dme-mir-1007 Known_mirbase GAACGGAGGCAGTGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-TTC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGGATCTTCTCGGAGAATCGACGACTGCTTCAGGGATTGCAGCTG
droEre2 scaffold_4690:17696719-17696883 - der_61 confident GAACGGAGGCAGTGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATC--TGGG-ATC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGTTG
droYak3 X:20343086-20343250 - dya_95 confident GAACGGAGGCAGCGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATC--TAGG-ATC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTG
droEug1 scf7180000408193:314889-315053 + GAATGGAGGCAGTGGATTCCGC------GGCGAGGA---------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-ATC---TTGGA------CTCCTGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATATTTTCGGAGAATCGAAGACTGCTCCAGGGAATGCAGCTG
droBia1 scf7180000302187:364098-364255 + GAACGGCGGCAGCGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTGCAGTGTAAGCAGTGTTTGAACTCGATC--TTG-----------GA------CTCCTGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATCTTCTCGGAGAATCGTCGACTGCTCCAGGGACTGCAGCTG
droTak1 scf7180000415158:280499-280663 + GAACGGCGGCAGCGGCTTCCGC------GGCGAGGA---------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--CCGG-ATC---CTGAA------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGCCGCCTCCTCCAGGGTTTCCAGCTG
droEle1 scf7180000490214:749244-749408 + GAACGGAGGCAGTGGTTTCCGT------AACGAGGA---------------CGACAACGAGTCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-ATC---TTGGA------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGAAGGCATCTTCTCGGAGAACCGACGCCTGCTCCAGGGAATGCAGCTG
droRho1 scf7180000780082:45623-45787 + GAACGGTGGCAGCGGATTCCGT------GGCGAAGA---------------TGACAGCGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-ATC---TTAGA------TTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGAATGCAGCTG
droFic1 scf7180000454077:618915-619078 - GAACGGCGGCAGCGGCTTCCGT------GGCGAGGA---------------TGACAACGAATCCGTACAGTGTAAGCAGTGCTTGAACTCGATC--TTGG-ATC---TTGGA------C-CCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGCCGCCTGCTCCAGGGACTCCAACTG
droKik1 scf7180000302395:538327-538502 - GAACGGCGGCACCGGTTATCATCCATCGGGCGAGGA---CA---------ATGACAACGAATCAGTGCAGTGTAAGCAGTGCTTGAACTCGATC--TCGT-ATT-AATTGGT------CTTCTGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAACCGACGCCTGCTCCAGGGACTGCAGCTG
droAna3 scaffold_13334:1054337-1054504 + dan_140 confident GAACGGCGGCACCGGCTACCGTGGTCCCGGGGACGA---------------CGACAACGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-AAT-----A-G------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGACGTCTCCTCAACGGCCTCCAGCTG
droBip1 scf7180000396733:702495-702662 + GAACGGCGGCACTGGATACCGGGGACCTGGCGACGA---------------GGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-AAT-----A-G------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGACGTCTCCTCAACGGCCTCCAGTTG
dp5 XL_group1a:9060560-9060740 + dps_2595 GAACGGCGGCACTGGCTA---T------AGCAAGGAGGACAACAACCACCACGACAACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCAATTGA-ATCGA-ATCGA----ATCGAATGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCTCCGAGAATCGTCGCCTGCTTCAAGGAATGAAGCTC
droPer2 scaffold_15:1454016-1454195 + GAACGGCGGCACTGGCTA---T------GGCAAGGAGGACAACAACCACCACGACAACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCAATTGA-ATCGA-ATCGA----ATCGAATGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCTCCGAGAATCGTCGCCTGCTCCAAGGA-TGAAGCTC
droWil2 scf2_1100000004515:162860-163016 - GAATGGCGGCACCGGC---TAT------GCCGATGA---------------GGACAATGAATCCATGCAATGTGAGTT--TTTTGATTTTCTTG--T-----------TTAA------TTTCGAAAAACTTTAATCGACTGTATTCTATCAGCTGATGGCATCTTCTCGGAGAATCGTCGTTTACTGCAGGGCATGCAATTA
droVir3 scaffold_12970:7925690-7925858 - dvi-mir-1007 Known_mirbase AAAAGGAGGTGCTGTA---ACT------AATAATGT---------------TGACAACGAATCAATGAAATGTAAGCAGTGCTTGAGCTTATTC--TCTGGCTTCA-TTTGAC--CATTTTCTGATAAGCTCAATTAACTGTTT----GCAGCGGATGCCGCCCTCTCGAACAATACTCAACTGTTGCGCGGCATGAAACTG
droMoj3 scaffold_6482:1600606-1600769 + dmo_86 confident A----------GCGATTCCCCTAGCT--CCAAATAC---------------CGACAATGAGTCCATGAAATGTAAGCAGTGTTTGAACTAAATC--TCTGGCTAC--TTGGC---CGTATATTGATAAGCTCAACTAACTGTTT----GCAGCGGACACCTATTTGGCGCAGAGTGCTCAAATGTTGGACGGCATGAAGCTG
droGri2 scaffold_15203:11134535-11134700 + dgr_50 confident AAAGGGCAGCACTGGCT------------ATGAAGA---------------TGACAGCGAATCAATACAATGTAAGCAGTGTTTGAACTGAATA--TCTGGTTA---TCCGACTTCATATACTGATAAGCTCAATTCACTGTTT----GCAGCGGATGGCGTCTTCTCGGACAACCGTCGACCGCTGCAAGGGATGAAGCTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GAACGGAGGCAGTGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-TTC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTGSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................271348.00348327915500000000100000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GC....................................................211183.00183137111312511210000000
.......................................................................GTAAGCAGTGTTTGAACTC................................................................................................................19199.00997771130000000100000
.........................................................................AAGCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................25169.0069160530000000000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTCA.....................................................................23165.0065063110000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCA...................................................22156.00566017411521260200000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTC......................................................................22150.00501371110000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAG..................................................23148.004812121316101001001000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCT.......................................................................21136.0036030510000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--..........................................................................................................23135.0035671911000001000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCA.....................................................................21133.0033028500000000000000
.......................................................................GTAAGCAGTGTTTGAACT.................................................................................................................18126.0026018210000000500000
.............................................................................................................................TAAGCTCAATTAACTGTT...........................................................18123.0023500031400001000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA.................................................24123.002300000056660000000
...............................................................................TGTTTGAACTCGATC--TTGG-.....................................................................................................19121.0021018210000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCT.......................................................................19120.0020019010000000000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCA.....................................................................22119.0019012420000000100000
...........................................................................GCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................23118.0018014400000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTC......................................................................20118.0018016200000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGCG................................................25117.0017000051200000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTGG-T....................................................................................................28116.001607180000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTG.......................................................................................................26116.0016032110000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--T.........................................................................................................24115.001536600000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----......................................................19114.0014100001300000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCAATTAACT..............................................................28113.0013012100000000000000
..............................................................................GTGTTTGAACTCGATC--TTGG-.....................................................................................................20113.0013010200000000100000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCAATTAAC...............................................................27113.0013010300000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----G.....................................................20112.001280010300000000000
.............................................................................................C--TTGG-TTC---TTGGA------CTCTTGATAAGCT.......................................................................26111.001109110000000000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGC........................................................................20110.001004600000000000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTC......................................................................21110.001014500000000000000
.............................................................................AGTGTTTGAACTCGATC--TTGG-.....................................................................................................2119.00908100000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGC........................................................................1818.00804400000000000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTCAATTAAC...............................................................2918.00805030000000000000
......................................................................................ACTCGATC--TTGG-TTC---TTGGA------CT..................................................................................2217.00714200000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAA..................................................2317.00700000000160000000
........................................................................TAAGCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................2617.00702050000000000000
...........................................................................................................TTGGA------CTCTTGATAAGCTC......................................................................1917.00701600000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT.................................................2417.00701050000000100000
......................................................................................................TC---TTGGA------CTCTTGATAAGCT.......................................................................2017.00705110000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCAA....................................................................2217.00703400000000000000
..............................................................................GTGTTTGAACTCGATC--TTGG-T....................................................................................................2116.00603300000000000000
...................................................................................................G-TTC---TTGGA------CTCTTGATAAGCTC......................................................................2316.00605100000000000000
..........................................................................................GATC--TTGG-TTC---TTGGA------CTCTTG..............................................................................2216.00604020000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAC..................................................2315.00510010000120000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTCAA....................................................................2415.00505000000000000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCAATTAAC...............................................................2815.00503200000000000000
...........................................................................................................TTGGA------CTCTTGATAAGCT.......................................................................1815.00503110000000000000
...................................................................................................G-TTC---TTGGA------CTCTTGATAAGCT.......................................................................2215.00502300000000000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCC.......................................................................2114.00403100000000000000
..........................................................................AGCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................2414.00403010000000000000
......................................................................................................TC---TTGGA------CTCTTGATAAGC........................................................................1914.00401210000000000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCAATTAACT..............................................................2914.00403100000000000000
............................................................................CAGTGTTTGAACTCGATC--TTGG-.....................................................................................................2213.00303000000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGAT.............................................................................................................2213.00301020000000000000
.......................................................................................CTCGATC--TTGG-TTC---TTGGA------CTCTTGAT............................................................................2713.00302100000000000000
.......................................................................GTAAGCAGTGTTTGAACTCG...............................................................................................................2013.00300010000100100000
.............................................................................................C--TTGG-TTC---TTGGA------CTCTTGATAAGCTCA.....................................................................2813.00300120000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TT........................................................................................................2513.00302000000001000000
.....................................................................................................................................................................CTCGGAGAATCGACGACT...................1813.00301200000000000000
................................................................................................TTGG-TTC---TTGGA------CTCTTGA.............................................................................1913.00310200000000000000
...................................................................................................................................................................TTCTCGGAGAATCGACGAC....................1912.00200200000000000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTCAAT...................................................................2512.00202000000000000000
........................................................................................................................................................CGGACGGCATCTTCTCGGA...............................1912.00201100000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTGG-G....................................................................................................2812.00202000000000000000
.......................................................................GTAAGCAGTGTTTGAACC.................................................................................................................1812.00202000000000000000
........................................................................................................................................................CGGACGGCATCTTCTCGGAG..............................2012.00202000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGAA................................................2512.00200000010100000000
................................................................................GTTTGAACTCGATC--TTGG-.....................................................................................................1812.00202000000000000000
.............................................................................................................................................................................ATCGACGACTGCTCCAGG...........1812.00200200000000000000
...................................A---------------TGACAACGAATCTGTACAGT...................................................................................................................................2112.00202000000000000000
..........................................................................................GATC--TTGG-TTC---TTGGA------CTCTTGA.............................................................................2312.00201010000000000000
................................................................................................TTGG-TTC---TTGGA------CTCTTGATAAGCT.......................................................................2512.00220000000000000000
.......................................................................................................................................................................CGGAGAATCGACGACTGCTC...............2012.00201100000000000000
......................................................................................ACTCGATC--TTGG-TTC---TTGGA------C...................................................................................2112.00211000000000000000
...................................................................................................G-TTC---TTGGA------CTCTTGATAAGCTCA.....................................................................2412.00202000000000000000
................................................................................GTTTGAACTCGATC--TTGG-T....................................................................................................1912.00202000000000000000
.........................................................................AAGCAGTGTTTGAACTCGATC--TTGG-T....................................................................................................2612.00201010000000000000
..................................................................................................................................................................CTTCTCGGAGAATCGACGA.....................1912.00201100000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAAA.................................................2412.00200000000110000000
...............................................................................TGTTTGAACTCGATC--TTGG-T....................................................................................................2012.00202000000000000000
.............................................................................................C--TTGG-TTC---TTGGA------CTCTTGATAAGCC.......................................................................2612.00202000000000000000
......................................................................................ACTCGATC--TTGG-TTC---TTGGA------CTCTTGATA...........................................................................2912.00202000000000000000
........................................................................................TCGATC--TTGG-TTC---TTGGA------CTCT................................................................................2212.00220000000000000000
.............................................................................AGTGTTTGAACTCGATC--TTGG-T....................................................................................................2212.00201000000000100000
........................................................................................TCGATC--TTGG-TTC---TTGGA------CTCTTGAT............................................................................2612.00220000000000000000
...................CGT------GGCGAGGA---------------TGACAACGAATCTGTA.......................................................................................................................................2711.00100000000000010000
......................................................................................ACTCGATC--TTGG-TTC---TTGGA------CTCT................................................................................2411.00101000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCG...................................................2211.00110000000000000000
.............................................................................................C--TTGG-TTC---TTGGA------CTCTTGATAAG.........................................................................2411.00100000100000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTA................................................2511.00100000000100000000
..........................................................................................GATC--TTGG-TTC---TTGGA------CT..................................................................................1811.00101000000000000000
...........................................................................GCAGTGTTTGAACTCGATC--TTG.......................................................................................................2211.00100010000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAG.........................................................................1711.00100000001000000000
...................................................................................................G-TTC---TTGGA------CTCTTGATAAGCC.......................................................................2211.00100100000000000000
..............................................................................GTGTTTGAACTCGATC--TTGG-TT...................................................................................................2211.00101000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTAA...............................................2611.00100000000010000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GA....................................................2111.00110000000000000000
....................................................................................GAACTCGATC--TTGG-TTC---TTGGA------CTC.................................................................................2511.00101000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCT...................................................2211.00110000000000000000
........................................................................TAAGCAGTGTTTGAACTCGA..............................................................................................................2011.00110000000000000000
........................................................................TAAGCAGTGTTTGAACTCGATC--TT........................................................................................................2411.00100010000000000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCAA....................................................................2311.00100100000000000000
................................................................................................TTGG-TTC---TTGGA------CTCTTGG.............................................................................1911.00110000000000000000
......................................................................................................................CTCTTGATAAGCTCAATTAACTGTT...........................................................2511.00100100000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--C.........................................................................................................2411.00100100000000000000
......................................................................TGTAAGCAGTGTTTGAACTCGATC--TTG.......................................................................................................2711.00100010000000000000
............................................................................................TC--TTGG-TTC---TTGGA------CTCTTG..............................................................................2011.00101000000000000000
.............................................................................................C--TTGG-TTC---TTGGA------CTCTTGG.............................................................................2011.00101000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCACT.................................................2411.00100100000000000000
................................................................................................................................................................ATCTTCTCGGAGAATCGACGACT...................2311.00101000000000000000
..................................................................................................................................................................CTTCTCGGAGAATCGACGACTGC.................2311.00100100000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--G.........................................................................................................2411.00101000000000000000
...........................................................................................................................GATAAGCTCAATTAACTGTTT----GCAG..................................................2511.00100010000000000000
.............................................................................AGTGTTTGAACTCGATC--TTGG-G....................................................................................................2211.00101000000000000000
...................................................................................................................................................................TTCTCGGAGAATCGACGACTGC.................2211.00101000000000000000
.............................................................................................C--TTGG-TTC---TTGGA------CTCTTGATAAGC........................................................................2511.00100010000000000000
........................................................................TAAGCAGTGTTTGAACTCGATC--TTG.......................................................................................................2511.00100010000000000000
.............................................................................AGTGTTTGAACTCGATC--TTGG-TT...................................................................................................2311.00101000000000000000
..............................................................................................................GA------CTCTTGATAAGCTCAATTAACT..............................................................2411.00100010000000000000
................................................................................................................................GCTCAATTAACTGTTT----GC....................................................1811.00101000000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCAAT...................................................................2311.00101000000000000000
........................................................................................TCGATC--TTGG-TTC---TTGGA------C...................................................................................1911.00110000000000000000
...........................................................................................................TTGGA------CTCTTGATAAGCTCAATTAAC...............................................................2611.00101000000000000000
.........................................................................................CGATC--TTGG-TTC---TTGGA------CTCTTGAT............................................................................2511.00101000000000000000
...................................................................................................................................CAATTAACTGTTT----GCAGT.................................................1811.00100010000000000000
..................................................................................................................................................................CTTCTCGGAGAATCGACGG.....................1911.00100100000000000000
.....................................................................................AACTCGATC--TTGG-TTC---TTGGA------C...................................................................................2211.00101000000000000000
.................................................................................................................................CTCAATTAACTGTTT----GCAG..................................................1911.00100000000001000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCG.....................................................................2211.00100010000000000000
..............................CGAGGA---------------TGACAACGAATCT..........................................................................................................................................1911.00100010000000000000
........................................................................TAAGCAGTGTTTGAACTCGATC--..........................................................................................................2211.00100100000000000000
.........................................................................................CGATC--TTGG-TTC---TTGGA------CTC.................................................................................2011.00101000000000000000
...........................................................................................................TTGGA------CTCTTGATAAGCTCAA....................................................................2111.00100100000000000000
......................................................................................ACTCGATC--TTGG-TTC---TTG............................................................................................1811.00101000000000000000
..........................................................................................................................................................GACGGCATCTTCTCGGAGAATC..........................2211.00100010000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGC.................................................2411.00100001000000000000
.........................................................................................CGATC--TTGG-TTC---TTGGA------CTCTTGATAAG.........................................................................2811.00100010000000000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTCT.....................................................................2311.00101000000000000000
................................................................................GTTTGAACTCGATC--TTGG-TT...................................................................................................2011.00101000000000000000
.........................................................................AAGCAGTGTTTGAACTCGATC--..........................................................................................................2111.00101000000000000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCC.......................................................................2011.00101000000000000000
.........................................................................AAGCAGTGTTTGAACTCGATC--TTG.......................................................................................................2411.00100010000000000000
.......................................................................................................................TCTTGATAAGCTCAATTAACTGTTT----......................................................2511.00100010000000000000
.............................................................................................................GGA------CTCTTGATAAGCTCA.....................................................................1811.00100000000000100000
......................................................................................................TC---TTGGA------CTCTTGATAAGCG.......................................................................2011.00101000000000000000
...................................A---------------TGACAACGAATCTGTACAGTC..................................................................................................................................2211.00101000000000000000
.AACGGAGGCAGTGGATTCCGT------GG............................................................................................................................................................................2311.00100001000000000000
......................................................................................ACTCGATC--TTGG-TTC---TTGGA------CTCTTGAT............................................................................2811.00100100000000000000
...................................................................................................G-TTC---TTGGA------CTCTTGATAAGC........................................................................2111.00101000000000000000
...........................................................................................ATC--TTGG-TTC---TTGGA------CTC.................................................................................1811.00101000000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCC.....................................................................2111.00101000000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCC.......................................................................1911.00101000000000000000
............................................................................................TC--TTGG-TTC---TTGGA------CTCTTGATAAGCT.......................................................................2711.00101000000000000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTCAATT..................................................................2611.00101000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT................................................2511.00100010000000000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTCG.....................................................................2311.00101000000000000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCG.......................................................................2111.00101000000000000000
.........................................................................................................................TTGATAAGCTCAATTAACTGTTT----......................................................2311.00100010000000000000
.................................................................................TTTGAACTCGATC--TTGG-TTC---TTGGA------CT..................................................................................2711.00110000000000000000
...................................................TGACAACGAATCTGTACAGT...................................................................................................................................2011.00100100000000000000
..............................................................................GTGTTTGAACTCGATC--TTG.......................................................................................................1911.00100010000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----G.....................................................1911.00100001000000000000
...................................................................................................................................................................TTCTCGGAGAATCGACGACTGCTCC..............2511.00101000000000000000
...............................................................................................................A------CTCTTGATAAGCTCAATTAACTGT............................................................2511.00100010000000000000
...........................................................................................................TTGGA------CTCTTGATAAGCTCA.....................................................................2011.00101000000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCG.......................................................................1911.00101000000000000000
.........................................................................AAGCAGTGTTTGAACTCGATC--TT........................................................................................................2311.00100010000000000000
.......................................................................GTAAGCAGTGTTTGAA...................................................................................................................1620.50100000000001000000
...........................................................................................................TTGGA------CTCTTGATAAGCC.......................................................................1820.50100100000000000000
droSec2
GAACGGAGGCAGTGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-TTC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTGSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCA...................................................221164.00164895862
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAG..................................................231147.0014710641621
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT.................................................24191.0091651214
.............................................................................................................................TAAGCTCAATTAACTGTTT----G.....................................................20179.007986164
.............................................................................................................................TAAGCTCAATTAACTGTTT----GC....................................................21171.0071281042
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................27161.006150560
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA.................................................24137.0037153118
.......................................................................GTAAGCAGTGTTTGAACT.................................................................................................................18123.002300185
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAC..................................................23113.001311020
.......................................................................GTAAGCAGTGTTTGAACTC................................................................................................................1919.0090261
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAG..................................................2219.0099000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT................................................2518.0082105
.......................................................................GTAAGCAGTGTTTGAACTCGATC--..........................................................................................................2317.0071060
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTG.......................................................................................................2617.0075110
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTCA.....................................................................2317.0072221
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCA.....................................................................2116.0060240
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTGG-T....................................................................................................2815.0052300
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGT.................................................2315.0055000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCA...................................................2115.0055000
...............................................................................TGTTTGAACTCGATC--TTGG-.....................................................................................................1914.0043010
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTTA...............................................2613.0030120
.............................................................................AGTGTTTGAACTCGATC--TTGG-.....................................................................................................2113.0033000
........................................................................TAAGCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................2613.0033000
.......................................................................GTAAGCAGTGTTTGAACTCG...............................................................................................................2013.0030210
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGT.................................................2213.0032001
.......................................................................GTAAGCAGTGTTTGAACTCGATC--T.........................................................................................................2413.0030102
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TT........................................................................................................2512.0022000
..............................................................................................................................AAGCTCAATTAACTGTTT----GC....................................................2012.0022000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTC......................................................................2212.0020110
.............................................................................................................................TAAGCTCAATTAACTGTTT----......................................................1912.0020011
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTA................................................2512.0020002
...........................................................................GCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................2312.0020020
............................GGCGAGGA---------------TGACAACGAAT............................................................................................................................................1912.0020020
.............................................................................................................................TAAGCTCAATTAACTGTT...........................................................1811.0011000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGC........................................................................2011.0010010
.................................................................................................................................CTCAATTAACTGTTT----GCAGT.................................................2011.0011000
........................................................................TAAGCAGTGTTTGAACTCGATC--TTG.......................................................................................................2511.0011000
................................................................................................TTGG-TTC---TTGGA------CTCTTGA.............................................................................1911.0011000
.........................................................................AAGCAGTGTTTGAACTCGATC--TTGG-T....................................................................................................2611.0010100
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCACT.................................................2411.0011000
...............ATTCCGT------GGCGAGGA---------------TGACAACGAA.............................................................................................................................................2511.0011000
.........................................................................................................................TTGATAAGCTCAATTAACTGTTT----......................................................2311.0011000
.............................................................................................................................TAAGCTCAATTAACTGTTT----C.....................................................2011.0011000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGAA................................................2511.0010100
......................................................................................................TC---TTGGA------CTCTTGATAAGCT.......................................................................2011.0010100
.........................................................................................................................TTGATAAGCTCAATTAACT..............................................................1911.0010010
........................................................................TAAGCAGTGTTTGAACTCGATC--T.........................................................................................................2311.0010010
.......................................................................GTAAGCAGTGTTTGAACTCGAT.............................................................................................................2211.0010010
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAA..................................................2311.0010001
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTCAA....................................................................2411.0010100
.......GGCAGTGGATTCCGT------GGCGAGGA---------------TGAC...................................................................................................................................................2711.0010100
...........................................................................................................TTGGA------CTCTTGATAAGCTCA.....................................................................2011.0010010
...............................................................................................................................AGCTCAATTAACTGTTT----G.....................................................1811.0010001
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCA.....................................................................2211.0011000
.............................................................................................C--TTGG-TTC---TTGGA------CTCTTGATAAGCT.......................................................................2611.0011000
...............................................................................................................................................................................CGACGACTGCTCCAGGGATTGC.....2211.0010010
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTTT...............................................2611.0011000
................................................................................................TTGG-TTC---TTGGA------CTCTTG..............................................................................1811.0011000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTC......................................................................2011.0010100
..................................................................................................................................TCAATTAACTGTTT----GCAG..................................................1811.0011000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAG..................................................2111.0011000
..................CCGT------GGCGAGGA---------------TGACAACGA..............................................................................................................................................2111.0010100
...............................................................................................................A------CTCTTGATAAGCTCAATTAACTGTT...........................................................2611.0010010
.............................................................................................................................................................................ATCGACGACTGCTCCAGGGATTGC.....2411.0010010
.......................................................................GTAAGCAGTGTTTGAACTCGA..............................................................................................................2111.0011000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCACA.................................................2411.0010001
.........................................................................AAGCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................2511.0010010
............................................................................................................................ATAAGCTCAATTAACTGTTT----GCATTT................................................2611.0011000
............................................................................................................................ATAAGCTCAATTAACTGT............................................................1811.0010010
.....GAGGCAGTGGATTCCGT------GGCG..........................................................................................................................................................................2111.0011000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GCAGT.................................................2511.0010100
...............ATTCCGT------GGCGAGGA---------------TGACAA.................................................................................................................................................2111.0010010
....................GT------GGCGAGGA---------------TGACAACGAA.............................................................................................................................................2011.0010010
dm3
GAACGGAGGCAGTGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-TTC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGGATCTTCTCGGAGAATCGACGACTGCTTCAGGGATTGCAGCTGSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCA...................................................2212690.002690000031000001010002000113000012315911001030002120013190000024000000000000000000131010800000093106130215517005266012111415010020234331280113200242283000000010000020000000220001000013000001411410124001965333171011950000053352000060300000024000000393525311328186792210599400631000020871213711122061823101430121479511225461015732420541000140592542014814120024202101361213022403410011000018602107165523860
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAG..................................................2312396.0023960000000000000100061000000010238771100112400111221110020000741000000000000000002115131700044041113001211022312092510111100602300000120505300000031301200011100190000013002000003125019001884399261810001048114200010140000000000000101142211011311926113379682044300280000230141161847141291157619651244501826259111301020511851297817111061070110122724133110620012000212201201813980
.............................................................................................................................TAAGCTCAATTAACTGTTT----GC....................................................2111510.00151000002000000000300100000200101144450100100001000000013010004100000000000000000041222000000100000032200002110020010000001191709016450652217000000010001000200008000000001200100761060450143481481880104700020890120000000000000000000000010500517152891934619002700000000610170830683611651212314001501020111004020112053001131720101001020051131300016010001300001601010052411150
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT.................................................241844.0084400000000000001000000000000000000000020010220002110421000000000000000000000009855000020101020032140011140369010060000072020101041210000001030027000595041005200000200000171501500160100200000000230400000030000003100000045065874131022501061040100200002300034400000657312011954660172813440020000002191640001024413003122624110923210600261002211310221215170
.............................................................................................................................TAAGCTCAATTAACTGTTT----G.....................................................201464.0046400000000000000300000000000300000000000000000010000200000000000000000000000002000000000000000000010000000000000000000500002000406200000000000000000020110000000000000001521040051208080400102011802000030300000000000000031001001020001300000000001611103311131100150110210100311422370001013721023918300010020000401100002110001011020432301011316860
.......................................................................GTAAGCAGTGTTTGAACTCGATC--..........................................................................................................231229.002290000000000000000000000010000200000000000000000000000000000000000000000000000000102000000002000000000000000000001000001000000000000000001000000000000030000000000000003100000000230120000011120000101000000300000001210144212311019207000001010113000001012402222420000664100000100171310020302112135251110120232351200101102600101042840
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA.................................................241204.002040000000000000000000000000000000000001000011000101020000000000000000000000000000100000000000001001000090000000010000010020011010200000000100001001000000000000000000005206000602010200000000000000100000000000000000000320392168527200200000102000102000201020101110102002010210002011202021340013000101100103000614100130001100000035440
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT................................................25179.00790000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001102000200000050000000000000000000000000000100000200000001000000001220101012000000000100010030000000020013300210200001000001000000003000001000001001021110570
.......................................................................GTAAGCAGTGTTTGAACT.................................................................................................................18172.00720000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000001030400000000000000000000000000000000000010000000001000000000000000000010000020000000000010000000000000000204403220300000029000100000000000022102105000000
.......................................................................GTAAGCAGTGTTTGAACTC................................................................................................................19170.0070000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000010000010000020000000030000000000000000000000300001100000000000000000300000000001000000000000000000000000000000000000101052050000004200400000000001008042822000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................27154.00540000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000182860000000000000000000000000000000000000000000000000000000000000000600000000000001010002040000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000010300000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGATC...............................................26154.005400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003915000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAA..................................................23146.00460000100010000000000000000000000000000000000010000000000000000000000000000000001000000000000000000000000000010000001000000000000200000000000000001000000000000000000001002000102020000000011000000101000000000000000000000011024010000100000000000000000000000000000100000000010000000200000000010000000000000000000000000000000000000100
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAT..................................................23138.0038000000000000000000000000000000000000001000000000000000000000000000000000000011000000000000000010000000000000000000000000000000000000000000000000000000000000000000000020100020102010000001000000010000000000000000000000011010105200200000000001001100000100001000001001110000000000100000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTG.......................................................................................................26134.0034000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000100000000000000000000000000000000000000000020000000000110000000000000000000000000000000000000000000100011000000001000000000303500001100000000000000000000000000000000000000000000000000000000000000001001200101100001000000000000000100000000
.............................................................................................................................TAAGCTCAATTAACTGTT...........................................................18131.0031000000000000000000000100000010000000100000000100000000000000000000000000000000000000000000000100000000000000000000000000000000120011800000000000000001000000000000000000000000010000000301000000000000000000000000000011000010000000000000000000000000000000000000000000000000000000300010000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAATC................................................25129.002900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTAA...............................................26129.0029000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000100000110000000000000000000100000000000000000000000000030000000000000000000020011001000000000000000000000000000000000000012000020116000000000001000000000000000000000000000000000000010000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCA...................................................21124.0024000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200010100000000000000000000000000000000000000000320300001103041000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGTTTGAACTCG...............................................................................................................20123.0023000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010100000000000000020000000000000000000000000000011100000000000000000000000001000100000000001000001020000000000000000000010000101001000000000100000001000200000000
.......................................................................GTAAGCAGTGTTTGAACTCGA..............................................................................................................21123.0023000000000000000000000000000000000000000000000000000000000000000000000000000000010000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000001300000000100000000000000200000000000000101000010001000000000010010010000000000000100010000000000000000000000110
.......................................................................GTAAGCAGTGTTTGAACTCGAT.............................................................................................................22121.0021000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100000000000000000000000001000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000100001000000100000000000020000100011110000000000001000000010000000000000000100010000000000200000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCC...................................................22121.0021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003100010003114000000000000000000000000000000000000110200000000000000000000000000000000000000000000000000000000000000000000110000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----......................................................19120.0020000000000000000000000000000000010100000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000002200000000000000000000000000300000130000110000010000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCA.....................................................................21117.0017000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000001100000000000000000000000000000000000000000000000000000000000001000000000000000001010810000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAC..................................................23117.0017000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200100000000000000001000000000000000000000000000000000010203300000000000000000000000000100000000000000010002000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTA................................................25114.0014000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100000000000000000000000000010000000000000000000000000000001000000000000001100000000000000000000000000100000000000000002000020001000000000000000000000000000000000010000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GC....................................................20114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010000000000000000000000000000000000000000000000000320000010103000000001000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TTGG-TTC---TTGGA------CTCTTGA.............................................................................19114.0014000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000001003000000000000000000000000000000000000000000100000000000000000100000000000101001001000100000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGT.................................................23111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000001110000000000000000000000000011000000000000000000200
.............................................................................................................................TAAGCTCAATTAACTGTTT----T.....................................................20110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000100000100201000003000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--T.........................................................................................................24110.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000010000000000000000000000000000000011000000000000000001000000000000000000000000010000000000000000000010000000000100000000000000000000000000000
.........................................................................AAGCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................25110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100040130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCATT.................................................24110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000001001000000000000000100000000000000000000000000000000000000000000010000000011010000100000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCA.....................................................................2219.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020000000000000000000000002000300000010
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAG..................................................2219.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000020300000000000000000000000000000000000000000010001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCT...................................................2218.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000420000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GCA...................................................2318.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000001000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000000000000010000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCG...................................................2217.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000010100010100000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGG.................................................2417.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000100
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGC.................................................2417.007000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000000000010000000000000010
.............................................................................................................................TAAGCTCAATTAACTGTTT----GT....................................................2117.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002010000000000000000000000000000000000000010100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATA--..........................................................................................................2316.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGAA................................................2516.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000010000000000000000000000100100000000000000000000000100000000
........................................................................TAAGCAGTGTTTGAACTCGATC--..........................................................................................................2216.006000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200100000000000000000000000000000000000000000100000000000000000000
..............................................................................GTGTTTGAACTCGATC--TTGG-T....................................................................................................2115.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000003100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----G.....................................................1915.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GC....................................................2215.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000100000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TT........................................................................................................2515.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTGG-T....................................................................................................2815.005000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GATC..................................................2324.509000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000072000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTCA.....................................................................2314.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000010100000000
..................................................................................................................................TCAATTAACTGTTT----GCAG..................................................1814.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000000000000000000
..........................................................................AGCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGT.................................................2214.004000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAAA.................................................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GCAG..................................................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TTGGA------CTCTTGATAAGCTCAATT..................................................................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCACT.................................................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................CTTCTCGGAGAATCGACGACTG..................2213.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTCAAT...................................................................2513.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GG....................................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--A.........................................................................................................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GA....................................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCACA.................................................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...................................................................................................................................................................................GACTGCTTCAGGGATTGC.....1813.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000000000000000100000000000000000000000000
...................................................................................................G-TTC---TTGGA------CTCTTGATAAGCT.......................................................................2213.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTTT...............................................2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000010000000000000000000000000000000000000000000000000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCT.......................................................................1913.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001100000000
...........................................................................GCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TCTTCTCGGAGAATCGAC.......................1813.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTAT...............................................2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAAT.................................................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TTGG-TTC---TTGGA------CTCTTGT.............................................................................1913.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATT--..........................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGAAA...............................................2612.002000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GCAGT.................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000000000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCT.......................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTTA...............................................2612.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000010
............................GGCGAGGA---------------TGACAACGAAT............................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGTAA...............................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................GATAAGCTCAATTAACTGTTT----GCAGT.................................................2612.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCAA....................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTA................................................2312.002000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................GAATCGACGACTGCTTCAGGGAT........2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CTTCTCGGAGAATCGACGA.....................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTG----C.....................................................2022.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................CTCAATTAACTGTTT----GCAG..................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTAT-C....................................................................................................2812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GAACGGAGGCAGTGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATC--TGGG-ATC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGTTGSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCA...................................................221488.004882051550172100
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAG..................................................231434.0043429376651170
.............................................................................................................................TAAGCTCAATTAACTGTTT----GC....................................................211290.0029067316281940
.............................................................................................................................TAAGCTCAATTAACTGTTT----G.....................................................201153.0015311113051230
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT.................................................241105.00105821340330
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA.................................................24128.002861402150
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAG..................................................22120.002020000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TGGG-.....................................................................................................27117.00178010800
.......................................................................GTAAGCAGTGTTTGAACTCGATC--..........................................................................................................23116.00164320160
..............................................................................................................................AAGCTCAATTAACTGTTT----GCA...................................................21115.001515000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT................................................25114.00143100370
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TGG.......................................................................................................26114.00148000420
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TGGG-A....................................................................................................2817.0072000500
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TG........................................................................................................2517.0073000310
.......................................................................GTAAGCAGTGTTTGAACTC................................................................................................................1916.0060000510
.......................................................................GTAAGCAGTGTTTGAACTCG...............................................................................................................2016.0060000330
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGC.................................................2415.0052300000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAA..................................................2315.0051000040
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGT.................................................2315.0055000000
.......................................................................GTAAGCAGTGTTTGAACT.................................................................................................................1814.0040000040
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAT..................................................2314.0042000020
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAC..................................................2314.0043000010
...............................................................................................................................AGCTCAATTAACTGTTT----GCA...................................................2013.0033000000
........................................................................TAAGCAGTGTTTGAACTCGATC--..........................................................................................................2213.0030010020
.......................................................................GTAAGCAGTGTTTGAACTCGATC--T.........................................................................................................2413.0032000100
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTA................................................2513.0030000030
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCA.....................................................................2112.0020000200
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGT.................................................2212.0021010000
...........................................................................................................................GATAAGCTCAATTAACTGTTT----GCAGT.................................................2612.0020000110
..............................................................................................................................AAGCTCAATTAACTGTTT----GC....................................................2012.0021000010
.............................................................................................................................TAAGCTCAATTAACTGTT...........................................................1812.0020000020
.......................................................................GTAAGCAGTGTTTGAACTCGA..............................................................................................................2112.0020000020
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTAA...............................................2612.0020000020
.............................................................................AGTGTTTGAACTCGATC--TGGG-.....................................................................................................2111.0011000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----......................................................1911.0010000010
......................................................................................................TC---TTGGA------CTCTTGATAAGCT.......................................................................2011.0010000100
....................GT------GGCGAGGA---------------TGACAACGA..............................................................................................................................................1911.0011000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCA.....................................................................2211.0010001000
..............GATTCCGT------GGCGAGGA---------------TGACAACGAAT............................................................................................................................................2711.0010001000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TGGG-G....................................................................................................2811.0011000000
..............................................................................................................................AAGCTCAATTAACTGTTT----G.....................................................1911.0011000000
................................................................................................................................................................................GACGACTGCTCCAGGGATT.......1911.0010000010
.......................................................................................................C---TTGGA------CTCTTGATAAGCT.......................................................................1911.0010000100
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCG...................................................2211.0010000010
..........AGTGGATTCCGT------GGCGAGG.......................................................................................................................................................................1911.0010000100
............................................................................CAGTGTTTGAACTCGATC--TGGG-.....................................................................................................2211.0010000010
............................................................................................................................ATAAGCTCAATTAACTGTTT----GCA...................................................2311.0010010000
.......................................................................GTAAGCAGTGTTTGAACTCGAT.............................................................................................................2211.0010001000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GC....................................................2211.0010000010
...............................................................................................................................................................................CGACGACTGCTCCAGGGA.........1811.0010000010
............................................................................................................TGGA------CTCTTGATAAGCTCAA....................................................................2011.0011000000
.........................................................................................CGATC--TGGG-ATC---TTGGA------CTCTTGATA...........................................................................2611.0010000010
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCACTT................................................2511.0010000010
...........................................................................................ATC--TGGG-ATC---TTGGA------CTCTTGA.............................................................................2211.0010000100
..........AGTGGATTCCGT------GGCGAGGA---------------T......................................................................................................................................................2111.0010000100
.........................................................................................................................................................GGACGGCATCTTCTCGGAGAATCGA........................2511.0010000100
...................................................................................................................................CAATTAACTGTTT----GCAGT.................................................1811.0011000000
.................................GGA---------------TGACAACGAATCTGTTCAGT...................................................................................................................................2311.0011000000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GCAG..................................................2411.0011000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCATT.................................................2411.0010010000
...........GTGGATTCCGT------GGCGAGGA---------------TGACA..................................................................................................................................................2411.0010000010
.................................................................................................................................CTCAATTAACTGTTT----GCAG..................................................1911.0011000000
...........................................................................................................TTGGA------CTCTTGATAAGCTC......................................................................1911.0010000100
...............ATTCCGT------GGCGAGGA---------------TGACAACG...............................................................................................................................................2311.0010000100
..........AGTGGATTCCGT------GGCGAGGA---------------TGAC...................................................................................................................................................2411.0010000100
........GCAGTGGATTCCGT------GGCGAGGA---------------TGACA..................................................................................................................................................2711.0011000000
.....................................................................................................ATC---TTGGA------CTCTTGATAAGCTCA.....................................................................2311.0010000100
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGAA................................................2511.0011000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGA.................................................2311.0011000000
...........................................................................................................TTGGA------CTCTTGATAAGCTCA.....................................................................2011.0010000010
........................................................................TAAGCAGTGTTTGAACTCGATC--TGG.......................................................................................................2511.0011000000
........................................................................................................................................................................GGAGAATCGACGACTGCTCCAGGGAT........2611.0010000100
.....................................................................................................ATC---TTGGA------CTCTTGATAAGCTC......................................................................2211.0010000100
.........................................................................AAGCAGTGTTTGAACTCGAT.............................................................................................................2011.0011000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTC......................................................................2011.0010000100
............................GGCGAGGA---------------TGACAACGAATCTGTTCAGT...................................................................................................................................2811.0010000100
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAAA.................................................2411.0010010000
.............................................................................................................................TAAGCTCAATTAACTGTTG----......................................................1920.5010000010
.............................................................................................................................TAAGCTCAATTAACTGTTT----CA....................................................2120.5011000000
.............................................................................................................................TAAGCTCAATTAACTGTTC----A.....................................................2040.2511000000
droYak3
GAACGGAGGCAGCGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATC--TAGG-ATC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTGSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT.................................................241427.004270183226231030000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAG..................................................231306.0030652404491520000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCA...................................................221164.00164811645111820000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GC....................................................211112.0011244421007810000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGC.................................................24185.0085018400000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--..........................................................................................................23148.00481452710010000
................................................................................................TAGG-ATC---TTGGA------CTCTTGA.............................................................................19133.0033192802100010
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAG..................................................22127.0027027000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TAGG-A....................................................................................................28122.0022060000200014
.............................................................................................................................TAAGCTCAATTAACTGTTT----G.....................................................20122.002216006900000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGT.................................................23120.0020019100000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA.................................................24117.0017012101300000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCA...................................................21116.0016016000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TAG.......................................................................................................26115.0015010000050000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TAGG-AT...................................................................................................29115.0015000000000015
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TAGG-.....................................................................................................27114.0014111100010000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT................................................25113.001317311000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--T.........................................................................................................2418.00833100010000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCA.....................................................................2218.00804000040000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTC......................................................................2117.00713100020000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TA........................................................................................................2517.00705000020000
.......................................................................GTAAGCAGTGTTTGAACTCGAT.............................................................................................................2216.00605100000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCA.....................................................................2115.00503000020000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAG..................................................2114.00404000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAC..................................................2314.00402200000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GC....................................................2014.00404000000000
................................................................................................................................GCTCAATTAACTGTTT----GCAG..................................................2014.00404000000000
.......................................................................GTAAGCAGTGTTTGAACTC................................................................................................................1914.00402010010000
...................................................................................................G-ATC---TTGGA------CTCTTGATAAGCT.......................................................................2214.00410200010000
.............................................................................................................................TAAGCTCAATTAACTGTT...........................................................1814.00440000000000
......................................................................................................TC---TTGGA------CTCTTGATAAGC........................................................................1913.00301200000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCT.......................................................................2013.00311000010000
.......................................................................GTAAGCAGTGTTTGAACTCGA..............................................................................................................2113.00301100010000
.............................................................................AGTGTTTGAACTCGATC--TAGG-A....................................................................................................2213.00302100000000
..................................................................................................................................TCAATTAACTGTTT----GCAGT.................................................1913.00302010000000
.......................................................................GTAAGCAGTGTTTGAACT.................................................................................................................1813.00301010010000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCAATTAACT..............................................................2913.00311100000000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GCAG..................................................2413.00303000000000
.....................................................................................................ATC---TTGGA------CTCTTGATAAGCTCA.....................................................................2313.00302000010000
.................................................................................................................................CTCAATTAACTGTTT----GCAGT.................................................2013.00302000010000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCATT.................................................2412.00201000100000
.....................................................................................................ATC---TTGGA------CTCTTGATAAGCTC......................................................................2212.00211000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAT..................................................2312.00201000100000
.......................................................................................................................TCTTGATAAGCTCAATTAACTGTTT----GC....................................................2712.00201100000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTA................................................2512.00202000000000
.......................................................................GTAAGCAGTGTTTGAACTCG...............................................................................................................2012.00201000010000
................................................................................................TAGG-ATC---TTGGA------CTCTTGG.............................................................................1912.00220000000000
.......................................................................................CTCGATC--TAGG-ATC---TTGGA------CTCTTGA.............................................................................2612.00201100000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCAA....................................................................2312.00202000000000
...................................................................................................G-ATC---TTGGA------CTCTTGATAAGCTCA.....................................................................2412.00201000010000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCAAT...................................................................2312.00202000000000
............................................................................................................................................................................AATCGACGACTGCTCCAGGGATTGC.....2512.00201000010000
..............................................................................................................................AAGCTCAATTAACTGTTT----G.....................................................1912.00202000000000
.....................................................................................................................................................................................CTGCTCCAGGGATTGCAGCTG2112.00200000020000
...............................................................................................................................AGCTCAATTAACTGTTT----GC....................................................1912.00202000000000
.......................................................................................CTCGATC--TAGG-ATC---TTGGA------CTCT................................................................................2312.00202000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----......................................................1912.00220000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGT.................................................2212.00202000000000
..........AGCGGATTCCGT------GGCGAGGA---------------T......................................................................................................................................................2112.00201010000000
.........................................................................AAGCAGTGTTTGAACTCGATC--TAGG-.....................................................................................................2512.00202000000000
.............GGATTCCGT------GGCGAGGA---------------TGACAACG...............................................................................................................................................2511.00101000000000
......................................................................................ACTCGATC--TAGG-ATC---TTGGA------CTCTTG..............................................................................2611.00101000000000
..............................................................................................................................................................................TCGACGACTGCTCCAGGGA.........1911.00100000010000
.......................................................................................CTCGATC--TAGG-ATC---TTGGA------CTCTTG..............................................................................2511.00101000000000
...........................................................................................................................................................................GAATCGACGACTGCTCCAGGGAT........2311.00101000000000
........................................................................................................................................................CGGACGGCATCTTCTCGGA...............................1911.00101000000000
......................................................................................................................CTCTTGATAAGCTCAATTAAC...............................................................2111.00101000000000
............................................................................................................................ATAAGCTCAATTAACTGTTT----......................................................2011.00101000000000
.............................................................................................C--TAGG-ATC---TTGGA------CTCTTGATAAGCTCA.....................................................................2811.00100000010000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCAG....................................................................2311.00100100000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCC...................................................2211.00100000100000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GCAGTT................................................2611.00101000000000
........................................................................TAAGCAGTGTTTGAACTCGA..............................................................................................................2011.00101000000000
.............................................................................................................................................................................ATCGACGACTGCTCCAGGGATT.......2211.00100000010000
............................................................................................................................ATAAGCTCAATTAACTGTT...........................................................1911.00101000000000
............................................................................................................................ATAAGCTCAATTAACTGTTT----T.....................................................2111.00100000100000
......................................................................................................................................................................................TGCTCCAGGGATTGCAGCTG2011.00101000000000
.............................................................................................................................................................................ATCGACGACTGCTCCAGGGA.........2011.00100000010000
............................GGCGAGGA---------------TGACAACGAAT............................................................................................................................................1911.00100000010000
..................................................................................................................................................................CTTCTCGGAGAATCGACGACC...................2111.00100100000000
................................................................................................................................GCTCAATTAACTGTTT----GCAGT.................................................2111.00101000000000
........................................................................TAAGCAGTGTTTGAACTCG...............................................................................................................1911.00101000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCACT.................................................2411.00100100000000
............................................................................................................................................................CGGCATCTTCTCGGAGAATC..........................2011.00100000010000
......................................................................................................................CTCTTGATAAGCTCAATTAACTGTTT----GC....................................................2811.00101000000000
................................................................................................TAGG-ATC---TTGGA------CTCTTGC.............................................................................1911.00110000000000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GC....................................................2211.00110000000000
..............................................................................................................GA------CTCTTGATAAGCTCAATTAACTGTTT----......................................................2811.00101000000000
...............................................................................................................................................................................CGACGACTGCTCCAGGGATTGCAGCT.2611.00100000010000
.....................................................................................................ATC---TTGGA------CTCTTGATAAGCTCAAT...................................................................2511.00101000000000
.......................................................................................................................TCTTGATAAGCTCAATTAACTGTT...........................................................2411.00101000000000
...........GCGGATTCCGT------GGCGAGGA---------------T......................................................................................................................................................2011.00101000000000
............................................................................CAGTGTTTGAACTCGATC--TAGG-A....................................................................................................2311.00101000000000
.............................................................................................................................................................................ATCGACGACTGCTCCAGGGATTGCAGC..2711.00100000010000
...................................................................................................................................CAATTAACTGTTT----GCAGT.................................................1811.00101000000000
..............................................................................................................................................................................TCGACGACTGCTCCAGGGATTG......2211.00101000000000
.......................................................................................................................TCTTGATAAGCTCAATTAACTGTTT----......................................................2511.00101000000000
..........AGCGGATTCCGT------GGCGAGGA---------------.......................................................................................................................................................2011.00100000010000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCACA.................................................2411.00101000000000
................................................................................................................................................................................GACGACTGCTCCAGGGATTGCAGCTG2611.00101000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCT.......................................................................1911.00110000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGAAC...............................................2611.00110000000000
.............................................................................................C--TAGG-ATC---TTGGA------CTCTTGATAAGC........................................................................2511.00100100000000
.................TCCGT------GGCGAGGA---------------TGACAA.................................................................................................................................................1911.00101000000000
.........................................................................AAGCAGTGTTTGAACTCGATC--TAGG-AT...................................................................................................2711.00101000000000
.............................................................................AGTGTTTGAACTCGATC--TA........................................................................................................1911.00101000000000
................................................................................................TAGG-ATC---TTGGA------CTCTTGATAAGCT.......................................................................2511.00100000100000
............................................................................................TC--TAGG-ATC---TTGGA------CTCT................................................................................1811.00110000000000
.....GAGGCAGCGGATTCCGT------GGC...........................................................................................................................................................................2011.00101000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCACT.................................................2311.00100100000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTT................................................2311.00101000000000
..........................................................................AGCAGTGTTTGAACTCGATC--TA........................................................................................................2211.00101000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTC................................................2511.00100100000000
.....................................................................................................................................................................CTCGGAGAATCGACGACTGCTC...............2211.00101000000000
.............................................................................................C--TAGG-ATC---TTGGA------CTCTTGATAAGCT.......................................................................2611.00110000000000
....................................................................................GAACTCGATC--TAGG-ATC---TTGGA------CTCTTGG.............................................................................2911.00110000000000
.......................................................................GTAAGCAGTGTTTGAACTCGAC.............................................................................................................2211.00100100000000
....................................................................................GAACTCGATC--TAGG-ATC---TTGGA------....................................................................................2211.00101000000000
...................................................................................................................................................................TTCTCGGAGAATCGACGACTGCTCC..............2511.00101000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCACTT................................................2411.00101000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGG.................................................2411.00101000000000
.........................................................................AAGCAGTGTTTGAACTCGA..............................................................................................................1911.00101000000000
..........................................................................................................................................................GACGGCATCTTCTCGGAGAATCGACGA.....................2711.00100000010000
................................................................................................................................................................................GACGACTGCTCCAGGGATT.......1920.50101000000000
..................................................................................................................................TCAATTAACTGTTT----GCAGTT................................................2020.50101000000000
...................................................................................................................................CAATTAACTGTTT----GCAGTT................................................1950.20101000000000
.............GGATTCCGT------GGCGAGGA---------------CCT....................................................................................................................................................2090.11100000100000
droEug1
GAATGGAGGCAGTGGATTCCGC------GGCGAGGA---------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-ATC---TTGGA------CTCCTGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATATTTTCGGAGAATCGAAGACTGCTCCAGGGAATGCAGCTGSizeHit CountTotal NormTotal
No Reads
droBia1
GAACGGCGGCAGCGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTGCAGTGTAAGCAGTGTTTGAACTCGATC--TTG-----------GA------CTCCTGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATCTTCTCGGAGAATCGTCGACTGCTCCAGGGACTGCAGCTGSizeHit CountTotal NormTotal
No Reads
droTak1
GAACGGCGGCAGCGGCTTCCGC------GGCGAGGA---------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--CCGG-ATC---CTGAA------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGCCGCCTCCTCCAGGGTTTCCAGCTGSizeHit CountTotal NormTotal
No Reads
droEle1
GAACGGAGGCAGTGGTTTCCGT------AACGAGGA---------------CGACAACGAGTCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-ATC---TTGGA------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGAAGGCATCTTCTCGGAGAACCGACGCCTGCTCCAGGGAATGCAGCTGSizeHit CountTotal NormTotal
No Reads
droRho1
GAACGGTGGCAGCGGATTCCGT------GGCGAAGA---------------TGACAGCGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-ATC---TTAGA------TTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGAATGCAGCTGSizeHit CountTotal NormTotal
No Reads
droFic1
GAACGGCGGCAGCGGCTTCCGT------GGCGAGGA---------------TGACAACGAATCCGTACAGTGTAAGCAGTGCTTGAACTCGATC--TTGG-ATC---TTGGA------C-CCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGCCGCCTGCTCCAGGGACTCCAACTGSizeHit CountTotal NormTotal
No Reads
droKik1
GAACGGCGGCACCGGTTATCATCCATCGGGCGAGGA---CA---------ATGACAACGAATCAGTGCAGTGTAAGCAGTGCTTGAACTCGATC--TCGT-ATT-AATTGGT------CTTCTGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAACCGACGCCTGCTCCAGGGACTGCAGCTGSizeHit CountTotal NormTotal
No Reads
droAna3
GAACGGCGGCACCGGCTACCGTGGTCCCGGGGACGA---------------CGACAACGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-AAT-----A-G------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGACGTCTCCTCAACGGCCTCCAGCTGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAG..................................................231266.0026615526117265
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCA...................................................221226.002261416226843
.............................................................................................................................TAAGCTCAATTAACTGTTT----GC....................................................211215.0021561231194107
.............................................................................................................................TAAGCTCAATTAACTGTTT----G.....................................................201143.00143700265105
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT.................................................241101.0010146340885
..............................................................................................................................AAGCTCAATTAACTGTTT----GCA...................................................21119.00191800100
.......................................................................GTAAGCAGTGTTTGAACTCGATC--..........................................................................................................23113.0013330007
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT................................................25111.0011230213
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAG..................................................22110.00101000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGC.................................................2419.009090000
..............................................................................................................................AAGCTCAATTAACTGTTT----GC....................................................2018.008800000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA.................................................2414.004200110
.......................................................................GTAAGCAGTGTTTGAACTCGA..............................................................................................................2113.003300000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAA..................................................2313.003020001
.......................................................................GTAAGCAGTGTTTGAACTCG...............................................................................................................2013.003000003
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAC..................................................2313.003120000
.......................................................................GTAAGCAGTGTTTGAACTC................................................................................................................1913.003001002
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................2713.003100011
............................................................................................................................ATAAGCTCAATTAACTGTTT----G.....................................................2113.003000003
...............................................................................................................................AGCTCAATTAACTGTTT----GCAG..................................................2113.003300000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTTT...............................................2612.002000002
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCACT.................................................2412.002200000
.......................................................................GTAAGCAGTGTTTGAACT.................................................................................................................1812.002000002
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGT.................................................2312.002200000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GA....................................................2112.002000101
................................................................................................TTGG-AAT-----A-G------CTCCCGATAAGCT.......................................................................2211.001000001
.............................................................................................................................TAAGCTCAATTAACTGTTT----A.....................................................2011.001100000
..........................................................................AGCAGTGTTTGAACTCGATC--TTGG-A....................................................................................................2511.001100000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TT........................................................................................................2511.001100000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAA..................................................2211.001100000
........................................................................TAAGCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................2611.001100000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTA................................................2511.001010000
.......GGCACCGGCTACCGTGGTCCCGGGGA.........................................................................................................................................................................2611.001100000
.......................................................................GTAAGCAGTGTTTGAACTCGAT.............................................................................................................2211.001000100
.....................................................................................................................................................................................CTCCTCAACGGCCTCCAGCT.2011.001001000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--T.........................................................................................................2411.001000001
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGTAA...............................................2511.001010000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTG.......................................................................................................2611.001100000
...............................................................................................................................AGCTCAATTAACTGTTT----G.....................................................1811.001100000
...........................................................................................................................................................ATGGCATCTTCTCGGAGAAT...........................2011.001000100
.......................................................................................CTCGATC--TTGG-AAT-----A-G------CTCC................................................................................2011.001000010
.............................................................................................................................TAAGCTCAATTAACTGTTT----......................................................1911.001000100
...........................................................................GCAGTGTTTGAACTCGATC--TTGG-.....................................................................................................2311.001100000
...............................................................................................................................AGCTCAATTAACTGTTT----GCA...................................................2011.001100000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GCAG..................................................2411.001000001
.............GGCTACCGTGGTCCCGGGGA.........................................................................................................................................................................2011.001100000
..................................GA---------------CGACAACGAATCCGTACAGTCC.................................................................................................................................2411.001010000
.....................TGGTCCCGGGGACGA---------------CGACAAC................................................................................................................................................2211.001100000
.................................................................................................................................CTCAATTAACTGTTT----GCA...................................................1811.001100000
..........................................................................................GATC--TTGG-AAT-----A-G------CTCCCGATAA..........................................................................2311.001000010
..........ACCGGCTACCGTGGTCCCGGGGA.........................................................................................................................................................................2311.001100000
......................................................................................ACTCGATC--TTGG-AAT-----A-G------CTCCCGATA...........................................................................2611.001100000
.............................................................................................................................TAAGCTCAATTAACTGTTT----T.....................................................2011.001000010
......................................................................................ACTCGATC--TTGG-AAT-----A-G------CTCCC...............................................................................2211.001010000
...........................................................................................................................................................................GAATCGACGTCTCCTCAACGGCCT.......2411.001100000
...............................................................................TGTTTGAACTCGATC--TTGG-.....................................................................................................1911.001100000
................................................................................................TTGG-AAT-----A-G------CTCCCGATAAGC........................................................................2111.001000100
droBip1
GAACGGCGGCACTGGATACCGGGGACCTGGCGACGA---------------GGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-AAT-----A-G------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGACGTCTCCTCAACGGCCTCCAGTTGSizeHit CountTotal NormTotal
No Reads
dp5
GAACGGCGGCACTGGCTA---T------AGCAAGGAGGACAACAACCACCACGACAACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCAATTGA-ATCGA-ATCGA----ATCGAATGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCTCCGAGAATCGTCGCCTGCTTCAAGGAATGAAGCTCSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...............................................................................................................................................................CATCTTCTCCGAGAATCGTCGCCTGC.................2612.0020200000000
..ACGGCGGCACTGGCTA---T------AGCAAGGAG.....................................................................................................................................................................2611.0010100000000
..........ACTGGCTA---T------AGCAAGGAGG....................................................................................................................................................................1911.0010100000000
..................................................................................................................................................................CTTCTCCGAGAATCGTCGCCTGC.................2311.0010100000000
..................................................................................................................................................................CTTCTCCGAGAATCGTCGCCTGCTT...............2511.0010100000000
..........................................................................................................................................................................AGAATCGTCGCCTGCTTCAA............2011.0010100000000
.......GGCACTGGCTA---T------AGCAAGG.......................................................................................................................................................................1911.0010100000000
..........................................CAACCACCACGACAACGAATC...........................................................................................................................................2111.0010100000000
...........................................................................................................................................................................GAATCGTCGCCTGCTTCAAGGA.........2211.0010100000000
....................................GGACAACAACCACCACGACAAC................................................................................................................................................2211.0010100000000
.....................................................................................................................................................................CTCCGAGAATCGTCGCCTG..................1911.0010100000000
...........CTGGCTA---T------AGCAAGGAGGACAACAAC............................................................................................................................................................2611.0010010000000
.....................................................................................................................................................................CTCCGAGAATCGTCGCCTGC.................2011.0010100000000
............................AGCAAGGAGGACAACAACCACC........................................................................................................................................................2211.0010000010000
................................................................................................................................................................ATCTTCTCCGAGAATCGTCGCCTG..................2411.0010100000000
...............................AAGGAGGACAACAACCAC.........................................................................................................................................................1811.0010010000000
....................................................GACAACGAATCGATACAGT...................................................................................................................................1911.0010100000000
...........................................................................................................................................................................GAATCGTCGCCTGCTTCAAGGAATGAA....2711.0010100000000
......................................................................................................................CGAATGATAAACTCCATGG.................................................................1940.2510010000000
droPer2
GAACGGCGGCACTGGCTA---T------GGCAAGGAGGACAACAACCACCACGACAACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCAATTGA-ATCGA-ATCGA----ATCGAATGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCTCCGAGAATCGTCGCCTGCTCCAAGGA-TGAAGCTCSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.................A---T------GGCAAGGAGGACAACAACCACCAC......................................................................................................................................................2612.002200000
.....................................................................................................................................................................CTCCGAGAATCGTCGCCTG..................1912.002200000
.................A---T------GGCAAGGAGGACAACAAC............................................................................................................................................................2011.001010000
.......GGCACTGGCTA---T------GGCAAGGAGGA...................................................................................................................................................................2311.001010000
..................................................................................................................................................................CTTCTCCGAGAATCGTCGCCTG..................2211.001100000
..................................GAGGACAACAACCACCACGA....................................................................................................................................................2011.001010000
.............................................................................................................................................................GGCATCTTCTCCGAGAATCGTCGCCTGC.................2811.001100000
.............................................................................................................................................................GGCATCTTCTCCGAGAATCGTCGCCTG..................2711.001100000
.......................................................................GTAAGCAGCGATTGA--TCAAT.............................................................................................................2011.001000001
droWil2
GAATGGCGGCACCGGC---TAT------GCCGATGA---------------GGACAATGAATCCATGCAATGTGAGTT--TTTTGATTTTCTTG--T-----------TTAA------TTTCGAAAAACTTTAATCGACTGTATTCTATCAGCTGATGGCATCTTCTCGGAGAATCGTCGTTTACTGCAGGGCATGCAATTASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..........................................................................................................................................................GATGGCATCTTCTCGGAGAATCGTC.......................2518.00800440
.............................................................................................................................................................................ATCGTCGTTTACTGCAGGGC.........2013.00301020
.............................................................................................................................................................GGCATCTTCTCGGAGAATCGT........................2112.00200200
.............................................................................................................................................................................ATCGTCGTTTACTGCAGGGCATGC.....2412.00200110
...............................................................................................................................................................................CGTCGTTTACTGCAGGGCA........1911.00100010
........................................................................................................................................................CTGATGGCATCTTCTCGGA...............................1911.00100010
...........................................................................................................................................................................GAATCGTCGTTTACTGCAGGGC.........2211.00100010
.................................................................................................................................................................TCTTCTCGGAGAATCGTCGTTTACTGC..............2711.00110000
...................................................................................................................................................................................GTTTACTGCAGGGCATGC.....1811.00100010
.........................................................................................................................................................................GAGAATCGTCGTTTACTGCA.............2011.00110000
..........................................................................................................................................................GATGGCATCTTCTCGGAGAAT...........................2111.00100001
.......................................................................................................................................................................CGGAGAATCGTCGTTTACTGCAGGGC.........2611.00100010
..........................................................................................................................................................GATGGCATCTTCTCGGAG..............................1811.00100010
.............................................................................................................................................................GGCATCTTCTCGGAGAATCGTC.......................2211.00100100
............................................................................................................................................................................AATCGTCGTTTACTGCAGGGC.........2111.00100010
.........................................................................................................................................................TGATGGCATCTTCTCGGAGAATC..........................2311.00100010
...................................................................................................................................................................TTCTCGGAGAATCGTCGTTTACTGC..............2511.00110000
droVir3
AAAAGGAGGTGCTGTA---ACT------AATAATGT---------------TGACAACGAATCAATGAAATGTAAGCAGTGCTTGAGCTTATTC--TCTGGCTTCA-TTTGAC--CATTTTCTGATAAGCTCAATTAACTGTTT----GCAGCGGATGCCGCCCTCTCGAACAATACTCAACTGTTGCGCGGCATGAAACTGSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.......................................................................GTAAGCAGTGCTTGAGCTTA...............................................................................................................2011669.001669311150153310312120501014106167617181885061551935116804913014100000000000000000000081946800000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGT.................................................2211193.00119321192123115303000226301536175720491013121724451723514801657306630000000000000000112710422041900030426300000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCA...................................................221271.002710061003000000001085115319151012111491633000100050000000000000000000010301600000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGT.................................................231191.00191002411032101000072122201514315732628110100118000100000000020000123700000002000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAG..................................................231186.001860084500030000001223121010202073131711012000000000000000000010112000000021005000010
...............................................................................................................................AGCTCAATTAACTGTTT----GCAG..................................................211145.00145009320001000000120220032011012921001000001000000000000000000002000500000101000000
.......................................................................GTAAGCAGTGCTTGAGCTT................................................................................................................191117.001170134101620000000110600015000102837080000015000000000000000000003100000010000000000
.......................................................................GTAAGCAGTGCTTGAGCTTAT..............................................................................................................21171.00710050020000100062023303500101973805000013000000000000000000001000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGA.................................................22166.0066001110100000000310010113221206102900000021000000000000000000005100000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GC....................................................21157.00572870000000000022104202300001471101000000000000000000000000005000000002100000010
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTC................................................23152.005200700100000000000010600000104106704000002000000000000000000002100000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAG..................................................22148.0048001900000000000000110013000003101501100000000000000000000000101000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCA...................................................20146.004600250000000000020002102000001052100000101000000000000000000003000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT.................................................24138.003800158000200000000000000100000121301000000000000000000000000200100000000010000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----G.....................................................20130.003000000000000000000000001000000332010000020000000000000000000018000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCA...................................................21129.00290060000000000023122202200000010500000000000000000000000000001000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTTATT.............................................................................................................22126.00260030010000000014000000100010234100000001000000000000000000004000000000000000000
................................................................................................................................GCTCAATTAACTGTTT----GCAGT.................................................21120.002000170000000000000000000000000030000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCT.................................................................................................................18120.002000120000002100000001000000000001001000002000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTT................................................23118.00180090000000000010001000000010110100000000000000000000000000003000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTTT...............................................................................................................20117.00170000010000000002001000200000021400000002000000000000000000001100000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGTC................................................24116.00160020000000000000000100000100440101000001000000000000000000000100000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTC................................................25114.00140000000000000000000010000000012900000001000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTTAA..............................................................................................................21114.00140010001010000000000001001010031100010001000000000000000000000100000000000000000
................................................................................................................................GCTCAATTAACTGTTT----GCAG..................................................20111.001100110000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAA..................................................23111.00110010001000000001000000001000113100000000000000000000000000000000010000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GC....................................................1919.0090090000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA.................................................2419.0090060000000000000000000000000010000000000000000000000000000000200000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GC....................................................2019.0090050000000000000000001100000000100000000000000000000000000001000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGC.................................................2218.0080005000000000000010000200000000000000000000000000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGA.................................................2317.0070000000000000000000000000100040100000001000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTAA...............................................2417.0070000000000000000000000000100000010031000000000000000000000000001000000000000000
........................................................................TAAGCAGTGCTTGAGCTTA...............................................................................................................1916.0060040000002000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAT..................................................2316.0060010000000000000000000000000201100000001000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTA................................................2315.0050010000000000000000000000001000110000000000000000000000000000001000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTTATTC--TCT.......................................................................................................2615.0050040000000000001000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAC..................................................2315.0050000000000000000000000000000102000110000000000000000000000000000000000000000000
.............................................................................................................................................................................ATACTCAACTGTTGCGCGGCATGA.....2414.0040011000000000000000000000000000000000000000000000000000000000000000000002000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGTA................................................2414.0040000020000000000000100000000010000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTTC...............................................................................................................2014.0040000010000000000000010000000011000000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTTC...............................................2414.0040010000000000000000000000000000100000000000000000000000000000020000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTTATC.............................................................................................................2214.0040000000000000000000000000000011100000001000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTCC...............................................2614.0040010000000000000000000000010010001000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTCT...............................................2414.0040010000000000000000000000000110000000001000000000000000000000000000000000000000
.........................................................................AAGCAGTGCTTGAGCTTA...............................................................................................................1814.0040000000100000000000000000000000000000001000000000000000000000200000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTT...........................................................1814.0040200000000000000000000000000000200000000000000000000000000000000000000000000000
................................................................................................................................GCTCAATTAACTGTTT----GCA...................................................1913.0030030000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTTG...............................................................................................................2013.0030010000000000000000000100000000000000000000000000000000000001000000000000000000
.................................................................................................................................CTCAATTAACTGTTT----GCAGT.................................................2013.0030020000000000000000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCATT.................................................2213.0030010000000000001000001000000000000000000000000000000000000000000000000000000000
.................................................................................................................................CTCAATTAACTGTTT----GCAG..................................................1913.0030010000000000000000000000000001000000000000000000000000000001000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAAAA................................................2513.0030010000000000000000000000100000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................CAACTGTTGCGCGGCATGAAACT.2313.0030000000000000000000000000000000000000000000000000000000000000000000000003000000
.......................................................................GTAAGCAGTGCTTGAGCTTATA.............................................................................................................2213.0030000000000000000000000000000100100010000000000000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGTCC...............................................2513.0030000000000000000000000000000021000000000000000000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGTT................................................2413.0030010000000000000000000000000100100000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTTAAA.............................................................................................................2213.0030000000000000000000000000010010000000010000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAA..................................................2113.0030000000000000000000000000000100100001000000000000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGC.................................................2313.0030012000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTAA...............................................2613.0030010000000000000000000000010000000010000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTC................................................................................................................1912.0020010000000000000000000000000000000000001000000000000000000000000000000000000000
...................................................................................................................................CAATTAACTGTTT----GCAGT.................................................1832.0060020000000000000000000010000100000000001000000000000000000000000000010000000000
................................................................................................................................GCTCAATTAACTGTTT----GCAGTC................................................2212.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCC...................................................2212.0020010000000000000000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................CTGATAAGCTCAATTAACTGTTT----GC....................................................2512.0020001000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................CGAACAATACTCAACTGTTGCGCGGC.........2612.0020000000000000000000000000000000000000000000000000000000000000000000001010000000
.....................................................................................................................................................................CTCGAACAATACTCAACT...................1812.0020000000000000000000000000000000000000000000000000000000000000000000002000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTCC...............................................2412.0020000000000000000000000000000110000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----......................................................1912.0020000000000000000000000000000000000000000000000000000000000002000000000000000000
.......................................................................................................................................................................CGAACAATACTCAACTGTTGCGC............2312.0020011000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT................................................2512.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTCA...............................................2421.5030000000000000000000000000000200100000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCT...................................................2211.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
........................................................................TAAGCAGTGCTTGAGCTT................................................................................................................1811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TTTGAC--CATTTTCTGATAAG.........................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
.......................................................................GTAAGCAGTGCTTGAGCTTATTC--TC........................................................................................................2511.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGTCT...............................................2511.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTA................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCATTC................................................2411.0010000010000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAC..................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................TC--TCTGGCTTCA-TTTGAC--CATTTT.................................................................................2411.0010000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAA..................................................2211.0010000000000000000000000000000000000001000000000000000000000000000000000000000000
............................................................................................TC--TCTGGCTTCA-TTTGAC--CAT....................................................................................2111.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
..............................................................................GTGCTTGAGCTTATTC--TCT.......................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----T.....................................................2011.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................GAC--CATTTTCTGATAAGCTC......................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................................................................................CTCAATTAACTGTTT----GCAGTT................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCACA.................................................2211.0010000000000000000000010000000000000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTTATTC--..........................................................................................................2311.0010000000000000000000000000001000000000000000000000000000000000000000000000000000
..................................................................................................TGGCTTCA-TTTGAC--CATTTTCTGATA...........................................................................2611.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGAAA...............................................2511.0010000000000000000000000000100000000000000000000000000000000000000000000000000000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GCAGT.................................................2511.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCATTA................................................2311.0010000000000000000000000000000000000100000000000000000000000000000000000000000000
....................CT------AATAATGT---------------TGACAACGAATC...........................................................................................................................................2211.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGC.................................................2411.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................TTCTGATAAGCTCAATTAACTGTTT----GC....................................................2711.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................C--TCTGGCTTCA-TTTGAC--CAT....................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................ACTCAACTGTTGCGCGGCATGAAACT.2611.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................CTGGCTTCA-TTTGAC--CATTTTCTGATA...........................................................................2711.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................AGTGCTTGAGCTTATTC--TCT.......................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
...................................................................................................................CATTTTCTGATAAGCTCAATT..................................................................2111.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TCAATTAACTGTTT----GCAGT.................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TTGAC--CATTTTCTGATAAG.........................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----C.....................................................2011.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
................................................................................................................................GCTCAATTAACTGTTT----GCAGA.................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTTATTC--TCTGGC....................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000010000000000000000
...................................................................................................................CATTTTCTGATAAGCTCAATTAACT..............................................................2511.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................................................................AGCAGTGCTTGAGCTTATT.............................................................................................................1911.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................................................................................................................TGATAAGCTCAATTAACTGTTT----GCAGT.................................................2711.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................AATACTCAACTGTTGCGCGG..........2011.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................GTTGCGCGGCATGAAACTG1911.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGAT................................................2311.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
...........................................................................GCAGTGCTTGAGCTTATTC--TCT.......................................................................................................2211.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................TTCTGATAAGCTCAATTAACTGTT...........................................................2411.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................CATTTTCTGATAAGCTCAATTAAC...............................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
........................................................................................................................TCTGATAAGCTCAATTAACTGTTT----GCA...................................................2711.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TATTC--TCTGGCTTCA-TTTGAC--.......................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................CTTCA-TTTGAC--CATTTTCTGATAA..........................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000010000000000
...................................................................................................................................................................CTCTCGAACAATACTCAACT...................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTCT...............................................2611.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
..............................................................................................................GAC--CATTTTCTGATAAGCT.......................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCACT.................................................2211.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGTTA...............................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
................................................................................................................C--CATTTTCTGATAAGCTCAATT..................................................................2211.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................ATACTCAACTGTTGCGCGGCATG......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAT..................................................2211.0010000000000000000000000000000000000010000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCATT.................................................2411.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................TGTAAGCAGTGCTTGAGCT.................................................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................GGATGCCGCCCTCTCGAAC..............................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................ATTC--TCTGGCTTCA-TTTGAC--CATTTTC................................................................................2711.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAAA.................................................2411.0010000000000000000000000000000000010000000000000000000000000000000000000000000000
............................................................................................................................................................................AATACTCAACTGTTGCGCGGC.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................TTCA-TTTGAC--CATTTTCTGATAAGC........................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000100000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGTAA...............................................2511.0010000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................GCTCAATTAACTGTTT----GC....................................................1811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TAAGCAGTGCTTGAGCTTATT.............................................................................................................2111.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTTT...............................................2420.5010000000000000000010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTAT...............................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................AAGCAGTGCTTGAGC..................................................................................................................1520.5010000000000000000000000000000000000000000000000000000000010000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAAT.................................................2220.5010000000000000000000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGAAA...............................................2420.5010010000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTTTA..............................................................................................................2120.5010000000000000000000000010000000000000000000000000000000000000000000000000000000
droMoj3
A----------GCGATTCCCCTAGCT--CCAAATAC---------------CGACAATGAGTCCATGAAATGTAAGCAGTGTTTGAACTAAATC--TCTGGCTAC--TTGGC---CGTATATTGATAAGCTCAACTAACTGTTT----GCAGCGGACACCTATTTGGCGCAGAGTGCTCAAATGTTGGACGGCATGAAGCTGSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCA...................................................221574.0057454746944
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCAGT.................................................241280.0028013144911913
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCAG..................................................231255.00255220637145
.............................................................................................................................TAAGCTCAACTAACTGTTT----GC....................................................211231.002311980111273
..............................................................................................................................AAGCTCAACTAACTGTTT----GCA...................................................21148.00484800000
.............................................................................................................................TAAGCTCAACTAACTGTTT----G.....................................................20146.00463018403
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCAGC.................................................24141.00411001390
.......................................................................GTAAGCAGTGTTTGAACTAAATC--..........................................................................................................23130.003050001114
..............................................................................................................................AAGCTCAACTAACTGTTT----GCAG..................................................22120.00202000000
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCAC..................................................23112.0012900030
..............................................................................................................................AAGCTCAACTAACTGTTT----GCAGT.................................................23112.00121100010
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCACT.................................................24111.0011500060
...................................................................................................................CGTATATTGATAAGCTCAACTAACTGTT...........................................................28110.00101000000
.......................................................................GTAAGCAGTGTTTGAACTAA...............................................................................................................20110.0010100009
..............................................................................................................................AAGCTCAACTAACTGTTT----GC....................................................20110.00101000000
.......................................................................GTAAGCAGTGTTTGAACTAAA..............................................................................................................2116.006200004
.......................................................................GTAAGCAGTGTTTGAACTAAATC--TCT.......................................................................................................2616.006300003
.......................................................................GTAAGCAGTGTTTGAACTAAAT.............................................................................................................2216.006200004
.....................................................................................................................TATATTGATAAGCTCAACTAACTGTT...........................................................2615.005400001
...............................................................................................................................AGCTCAACTAACTGTTT----GCA...................................................2015.005500000
.......................................................................GTAAGCAGTGTTTGAACTAAATC--TCTGG.....................................................................................................2815.005300002
........................................................................................TAAATC--TCTGGCTAC--TTGGC---.......................................................................................2015.005500000
.............................................................................................................................TAAGCTCAACTAACTGTTT----......................................................1915.005500000
............................................................................................................................ATAAGCTCAACTAACTGTTT----GCAG..................................................2414.004400000
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCAA..................................................2314.004300010
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCAT..................................................2314.004300001
..............................................................................................................................AAGCTCAACTAACTGTTT----G.....................................................1914.004400000
.......................................................................................CTAAATC--TCTGGCTAC--TTGGC---.......................................................................................2114.004400000
..................................................................................................................................TCAACTAACTGTTT----GCAGT.................................................1913.003100110
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCAGTT................................................2513.003200010
............................................................................................................................ATAAGCTCAACTAACTGTTT----GCA...................................................2313.003300000
.......................................................................GTAAGCAGTGTTTGAACTA................................................................................................................1913.003110001
..........................................................................................................................TGATAAGCTCAACTAACTGTTT----GC....................................................2413.003300000
...................................................................................................................CGTATATTGATAAGCTCAACTAACT..............................................................2513.003300000
.........................................................................................AAATC--TCTGGCTAC--TTGGC---.......................................................................................1913.003300000
............................................................................................................................ATAAGCTCAACTAACTGTTT----GC....................................................2213.003200100
.............................................................................................................................TAAGCTCAACTAACTGTT...........................................................1812.002200000
.......................................................................GTAAGCAGTGTTTGAACTAAATC--T.........................................................................................................2412.002000002
.............................................................................AGTGTTTGAACTAAATC--TCTGGCTAC--T..............................................................................................2712.002200000
.............................................................................AGTGTTTGAACTAAATC--TCTGGC....................................................................................................2312.002200000
....................................................................................GAACTAAATC--TCTGGCTAC--TTGG...........................................................................................2312.002200000
.......................................................................GTAAGCAGTGTTTGAACTAAATC--TCTG......................................................................................................2712.002200000
......................................................................................ACTAAATC--TCTGGCTAC--TTGG...........................................................................................2112.002200000
.............................................................................................................................TAAGCTCAACTAACTGTTT----GA....................................................2112.002100100
...........................................................................................................................GATAAGCTCAACTAACTGTTT----GC....................................................2312.002200000
...................................................................................................................CGTATATTGATAAGCTCAACT..................................................................2112.002200000
...............................................................................................................................AGCTCAACTAACTGTTT----GC....................................................1912.002200000
..............................................................................................................................AAGCTCAACTAACTGTTT----GCAGC.................................................2312.002000020
.....................................................................................AACTAAATC--TCTGGCTAC--TTGGC---.......................................................................................2312.002200000
............................................................................................................................ATAAGCTCAACTAACTGTTT----......................................................2012.002200000
............................................................................................................................................................CACCTATTTGGCGCAGAGTGCTC.......................2312.002000002
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCATT.................................................2412.002200000
.............................................................................................................................TAAGCTCAACTAACTGTTT----GT....................................................2112.002101000
.........................................................................................AAATC--TCTGGCTAC--TTGG...........................................................................................1812.002200000
...............................................................CATGAAATGTAAGCAGTGTTTGAA...................................................................................................................2411.001000001
......................................................................................................................ATATTGATAAGCTCAACTAACTGTTT----......................................................2611.001100000
..............................................................................................................................AAGCTCAACTAACTGTTT----GCAC..................................................2211.001100000
.....................................................................................................................................................................................ATGTTGGACGGCATGAAGC..1911.001100000
.......................................................................GTAAGCAGTGTTTGAACTAAATC--TC........................................................................................................2511.001000001
.........................................................................AAGCAGTGTTTGAACTAAATC--TCTGG.....................................................................................................2611.001100000
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCAGA.................................................2411.001100000
.......................................................................GTAAGCAGTGTTTGAACT.................................................................................................................1811.001100000
................................................................................................................................................................................CTCAAATGTTGGACGGCATGAAGCT.2511.001100000
................................................................................................TCTGGCTAC--TTGGC---CGTAT..................................................................................1911.001100000
...................................................................................................................CGTATATTGATAAGCTCAA....................................................................1911.001100000
.........................................................................................................................TTGATAAGCTCAACTAACTGTTT----......................................................2311.001100000
...................................................................................................................CGTATATTGATAAGCTCAACTAACTGTTT----......................................................2911.001100000
......................................................................................................................ATATTGATAAGCTCAACTAACTGTTT----GC....................................................2811.001100000
.....................................................................................................................TATATTGATAAGCTCAACTAACTGTTT----GC....................................................2911.001100000
.......................................................................................................................TATTGATAAGCTCAACTAACTGTTT----......................................................2511.001100000
............................................................................................................................ATAAGCTCAACTAACTGTTT----GCAGTT................................................2611.001100000
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCT...................................................2211.001100000
................................................................................................TCTGGCTAC--TTGGC---CGTATATTGA.............................................................................2411.001000010
...............................................................................TGTTTGAACTAAATC--TCTGGC....................................................................................................2111.001100000
...............................................................................................................C---CGTATATTGATAAGCTCAACTAACTGTT...........................................................2911.001100000
........................................................................TAAGCAGTGTTTGAACTAAATC--TCT.......................................................................................................2511.001100000
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCAGTC................................................2511.001000001
...................................................................................................................CGTATATTGATAAGCTCAACTAACTG.............................................................2611.001100000
........................................................................................................................................................................GCAGAGTGCTCAAATGTTGGAC............2211.001000001
.................................................................................TTTGAACTAAATC--TCTGGCTAC--T..............................................................................................2311.001100000
..................................................................................................................................TCAACTAACTGTTT----GCAGC.................................................1911.001000010
....................................................................................GAACTAAATC--TCTGGCTAC--T..............................................................................................2011.001100000
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCAAAA................................................2511.001100000
...............................................................................................................................AGCTCAACTAACTGTTT----GCAGT.................................................2211.001000001
.......................GCT--CCAAATAC---------------CGACAATGAGTCC..........................................................................................................................................2411.001100000
................................ATAC---------------CGACAATGAGTCCATGAAATC..................................................................................................................................2511.001100000
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCAAA.................................................2411.001100000
.........................................................................AAGCAGTGTTTGAACTAAATC--TCTGGC....................................................................................................2711.001100000
.........................................................................................................................TTGATAAGCTCAACTAACTGT............................................................2111.001000001
.........................................................................................AAATC--TCTGGCTAC--TTGGC---CGT....................................................................................2211.001100000
......................................................................................ACTAAATC--TCTGGCTAC--TTGGC---.......................................................................................2211.001100000
..............................................................................................................................AAGCTCAACTAACTGTTT----GCAGTT................................................2411.001100000
............................................................................................................................................................CACCTATTTGGCGCAGAGTGCTCA......................2411.001000100
.......................................................................................CTAAATC--TCTGGCTAC--TTGG...........................................................................................2011.001100000
.......................................................................................................................TATTGATAAGCTCAACTAACTGTTT----GC....................................................2711.001100000
..........................................................................................................................TGATAAGCTCAACTAACTGT............................................................2011.001100000
.......................................................................................CTAAATC--TCTGGCTAC--TTGGC---C......................................................................................2211.001100000
.....................................................................................................................TATATTGATAAGCTCAACTAACTGT............................................................2511.001000001
........................................................................TAAGCAGTGTTTGAACTAAATC--..........................................................................................................2211.001100000
....................................................................................GAACTAAATC--TCTGGCTAC--TTGGC---.......................................................................................2411.001100000
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCC...................................................2211.001100000
............................................................................................................................ATAAGCTCAACTAACTGTTT----GCAGT.................................................2511.001100000
.................................................................................................................................CTCAACTAACTGTTT----GCA...................................................1811.001100000
........................................................................................................................................................................GCAGAGTGCTCAAATGTTGGACGGCAT.......2711.001000001
.........................................................................AAGCAGTGTTTGAACTAAATC--TCT.......................................................................................................2411.001100000
................................................................................GTTTGAACTAAATC--TCTGGCTAC--TTGGC---.......................................................................................2811.001100000
droGri2
AAAGGGCAGCACTGGCT------------ATGAAGA---------------TGACAGCGAATCAATACAATGTAAGCAGTGTTTGAACTGAATA--TCTGGTTA---TCCGACTTCATATACTGATAAGCTCAATTCACTGTTT----GCAGCGGATGGCGTCTTCTCGGACAACCGTCGACCGCTGCAAGGGATGAAGCTTSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.............................................................................................................................TAAGCTCAATTCACTGTTT----GCAG..................................................231122.001221220
.............................................................................................................................TAAGCTCAATTCACTGTTT----GCA...................................................22143.0043412
.............................................................................................................................TAAGCTCAATTCACTGTTT----GC....................................................21121.0021201
.............................................................................................................................TAAGCTCAATTCACTGTTT----GCAGT.................................................24115.0015114
..............................................................................................................................AAGCTCAATTCACTGTTT----GCAG..................................................2216.00660
..............................................................................................................................AAGCTCAATTCACTGTTT----GCAGT.................................................2316.00651
..............................................................................................................................AAGCTCAATTCACTGTTT----GCA...................................................2114.00440
.............................................................................................................................TAAGCTCAATTCACTGTTT----GCAC..................................................2313.00330
.............................................................................................................................TAAGCTCAATTCACTGTTT----G.....................................................2013.00321
.......................................................................GTAAGCAGTGTTTGAACTGAATA--TC........................................................................................................2512.00220
.............................................................................................................................TAAGCTCAATTCACTGTTT----GCAT..................................................2312.00220
..................................................................................................................................TCAATTCACTGTTT----GCAG..................................................1811.00110
..........................................................................................................................................................................ACAACCGTCGACCGCTGCAAG...........2111.00110
..................................................................................................TGGTTA---TCCGACTTCATATACTGA.............................................................................2411.00110
............................................................................................................................ATAAGCTCAATTCACTGTTT----GCAGT.................................................2511.00101
.............................................................................................................................TAAGCTCAATTCACTGTTT----GCATG.................................................2411.00110
.............................................................................................................................TAAGCTCAATTCACTGTTT----GCAGGCA...............................................2611.00110
........GCACTGGCT------------ATGAAGA---------------TGACA..................................................................................................................................................2111.00101
................................................................................................................................................................................GTCGACCGCTGCAAGGGATGAA....2211.00110
.............................................................................................................................TAAGCTCAATTCACTGTTT----......................................................1911.00110

Generated: 10/20/2015 at 07:14 PM