ID:

dsi_2829

 Coordinate:

2r:2326859-2327008 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.0 -8.8 -8.8 -8.1

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
mature
star
  1. dsi_2829  2r:2326889-2326905 -
  2. 3l:4932801-4932817 +
  3. x:5112060-5112076 -
  4. x:6808009-6808025 -

Sense Strand Reads

GGAGCAAATCGCTATATACCACCATTTCCTTTGTTTAATAAATTTAATCATATGATATTTCGACATGTTTTAATCTGCATTTGTACATTAGCTTTGGTTTTCCCATAACCCTCTTTCCCTGATTTAAGTGTATTTTATTTTATAACCGACGTTATTTTTAATTTGAAAATTAATATTTTTAATTTGGATGATGCTTACAGATACTAATGCAGAAGACTGGACAACAGAAACTTTTATGGAACCGATCAAG
**************************************************************************....((((......((((.((((((............................................)))))).))))............))))******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
.........................................................................................................................................................................................................TACTAATGCAGAAGACTGGACAACAGA...................... 27 0 1 14.00 14 9 4 1 0 0 0
.........................................................................................................................................................................................................................TGGACAACAGAAACTTTTATGGAACCGA..... 28 0 1 2.00 2 2 0 0 0 0 0
.........................................................................................................................................................................................................TACTAATGCAGAAGACTGGACAACAGAAAC................... 30 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................TAATGCAGAAGACTGGACAACAGAAAC................... 27 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................TACTAATGCAGAAGACTGGACAACAGAAA.................... 29 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................TTACAGATACTAATGCAGAAGACTGGA............................. 27 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................................................................CAACAGAAACTTTTATGGAACCGAT.... 25 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................ATACTAATGCAGAAGACTGGACAACAGAAAC................... 31 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................TACTAATGCAGAAGACTGGACAACAGAA..................... 28 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................TAATGCAGAAGACTGGACAACAGAA..................... 25 0 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................................................................................................AATGCAGAAGACTGGACAACAGAAA.................... 25 0 1 1.00 1 0 0 0 1 0 0
.........................................................................................................................................................ATTTTTGATTTGAAAATTA.............................................................................. 19 1 2 1.00 2 0 0 0 1 1 0
..........................................................................CTGCATTTGTACATTAGCTTTGGTTT...................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................................TAATGCAGAAGACTGGACAACAGA...................... 24 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................ATTTTTAATTTGAAAAT................................................................................ 17 0 4 0.25 1 0 0 0 0 1 0
.......................................................................................................................................................TTATTTTTGATTTGAAAAT................................................................................ 19 1 5 0.20 1 0 0 0 0 0 1
...........................................................................................................................................................TTTTGATTTGAAAATTA.............................................................................. 17 1 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CCTCGTTTAGCGATATATGGTGGTAAAGGAAACAAATTATTTAAATTAGTATACTATAAAGCTGTACAAAATTAGACGTAAACATGTAATCGAAACCAAAAGGGTATTGGGAGAAAGGGACTAAATTCACATAAAATAAAATATTGGCTGCAATAAAAATTAAACTTTTAATTATAAAAATTAAACCTACTACGAATGTCTATGATTACGTCTTCTGACCTGTTGTCTTTGAAAATACCTTGGCTAGTTC
********************************************************************************....((((......((((.((((((............................................)))))).))))............))))************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 GSM343915
embryo
.......................................................................................................................................................................................AACCTACCACGGATGTC.................................................. 17 2 9 13.33 120 72 22 18 8 0 0 0 0
.....................GGTAAAGCAAACAAAGTATTT................................................................................................................................................................................................................ 21 2 2 1.00 2 0 0 0 1 1 0 0 0
................................................................................................................................................TGGCTGCAATAAAAATTAAACTTTTAATT............................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................AAACTACTACGGATGTC.................................................. 17 2 17 0.47 8 4 2 1 1 0 0 0 0
............................................ATTAGTCTACTATAACGTTGT......................................................................................................................................................................................... 21 3 7 0.14 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................AACTACTACGAATGTC.................................................. 16 1 7 0.14 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TGTTGTCTTTGAAAA............... 15 0 8 0.13 1 0 0 0 0 0 1 0 0
............................................ATTAGTCTACTATAACGTTG.......................................................................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 0 1 0
........................................................................................................................................................................................AGCTACTACGGATGTC.................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0 0
.............TTTTTGGTGGTAAAGGAGA.......................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1
.....................................................................................................................................AAAAAAAATATTGGCTTGAAT................................................................................................ 21 3 20 0.05 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................................AACTACCACGGATGTCTAT............................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:2326809-2327058 - dsi_2829 GGAGCAAA---------TC-GCTATATACCACCATTTCCT--------------------------------------TTGTTTAATAAATTTAATCATA----TGAT--------------------------------------------------------------------------------------------------ATTTCGACATGT-----------------TTTA-----ATCTGCATTTGTA---------C-ATTAGCTTTGGTTTTCCCATAACCCTCTTTCCCTGATTTAAGTGTATTTTATTTTATAACCGAC------GTT-------------------------ATTTTTAATTTGAAAATTAATATTTTTAATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGATGCTTACAGATACTAA--TGCAG-AAGACTGGACAACAGAAACTTTTATGGAACCGATCAAG
droSec2 scaffold_105:90020-90269 - GGTGCAAA---------TC-GCTATATACCACCATTTCCT--------------------------------------TTGTTTAATAAATTTAATCATA----TGAT--------------------------------------------------------------------------------------------------ATTTCGACATGT-----------------TTTA-----ATCTGCATTTGTA---------C-ATTATCTTTGGTTTTCCCATGACCCACTTTCCTTGATTTAAGTGTATTTTATTTTATAACCAAC------GTT-------------------------ATTTTTTATTTAAAAATTAATATTTTTAATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGATGCTTACAGATACTAA--TGCAG-AAGACTGGACAACAGAAACTTTTATGGAACCGATCAAG
dm3 chr2R:1355899-1356170 - GGCACAAA---------TC-GCTATATACCAGAATTTTCT--------------------------------------TTGTTTGATAAATTTAGTCATA----TCAT--------------------------------------------------------------------------------------------------ATTTCGACATT------------------TTT-----AAGCAGCAATTGTA---------C-ATAATCTTTGGTTTTCCCATGACC-TCTTTCTTTTGTTTAAATGAATTTTATTTTATAACCAAA------GTTTTAACTTTGTTATAAGATTTTTGTTA-TTCTAATTTTAAAATTAATATTTTTAATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGATGCTTACAGATACTAA--TGCAG-AAGACTGGACAACCGAAACTTTTATGGAACCGATCAAG
droEre2 scaffold_4929:21105153-21105277 + TTAAATGT---------CT-TTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAGATGTTTTATC-TTTTAATTCTAAAATTAACATTTTTAATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGATGTTTACAGATACTGA--TGCAG-AAGACTGGACCACATAAGCTTTTATGGAACCGATCAAG
droYak3 v2_chr2L_random_001:125972-126118 - TAAGACTC----TTTCCCC-ATTTC-------------------------------------------------GTAA-C--------------------AATTT-------TATT-----------------A-----GCTTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAAACCTTTGG-A-TTC---TATAAAAATTAAAATTTTT-ATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTATGTCTACAGGTATTGA--TGCAG-AAGACTGGACCACAGAAACTTTTATGGAACCGATCAAG
droEug1 scf7180000409440:98252-98368 - CTCTTTAC---------CT-ACTACG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGCATTATAACCTTTTACCTCCCTAGTAAAT-------------------------ATTTTTAATTAAAAAACTATATTTTTTAATTTA-------------------------------------GATA-----------ACAA----------------------------------------------------------------------------------------------------------------------------------------------------------ATTAATTCAAATCGTAA--TACAA-AAT---------------------------------AC
droBia1 scf7180000299898:51145-51322 - GAAGTCAG---------CA-GCAATCTTTAAAAATTT---------------------------------------------------------------------------CA--CATGGTGTTACTAAAATT----------------------------------------------------------------------------------GATTATTT----------CTTA-----TATATGCAAGGGTA---------T-ACAAACTTCGGCTTGCCGAAGTTA-----------------------------------------------------------------------------------------------------------ACT-TTCTTT---TTGTTTAGTTT-------TGCTTTAAAT----A------TACAATAAATT--------------------TTGTTTC-------------------------------------------------------------TGTTTATT----TTAGAAATGGT---------------------------------------------------TATT--ATT-AAA---------------------------------TT
droTak1 scf7180000412246:3331-3490 + CGTTTTGA---------TT-TCTGACAAC-------------------------------------------------------------TTAAA----A----TGGT--------------------------------------------------------------------------------------------------ATTT------------------------CTTT-----TATCTGCAATGGTA---------T-ATAAGCTTCGGCTGGCCT---------------------------------------------------------------------------------------------------------------------TCCTTT--CTTGTTTTT--T-------AACT---------TAAAAAAC---------------------------------ATT-------------------------------------------------------------TTTTTTAACC----CAAAGTCGAGTTTTCTTATCTGAAAAACGATTTTTTCACTTTGAAAA-------------------------------------------------------------AT
droEle1 scf7180000486474:445515-445755 + AAAATAAC---------TA-T-------------------------------------------------------------------------------------------CAAA-----------------TAATTGAGCTGCAA-ATCATCATAGCTTCAATGTTTTTAAAC-TTATACGCAAGTAAATTATAATTTTAATGTTTTCAAAAATGTTTAATT----------CTTG-CA-ATAGCTGCAAGGGTA---------T-ATGAACTTCGGCTTGCCGAAGTTT-----------------------------------------------------------------------------------------------------------GCT-TTCTTT--CTTGTTTTAGTT-------AACTTTACTTCATAGTAAAAT------ATTTT--------------------TTA-----------------------------------------------------------------ACTT---------------GAGGTTTTTAAACGG---------------------GAAGATTTCTTTAAATACTTA--T-------------------------------------------
droRho1 scf7180000760337:506-666 + CGGACAAC--------------------------------------------------------------------------------------------AATAT-------CATA-----------------T-----AGCTGCCATAAAAACGTAGCTTCATTGTTTTTTAGTAATATAGGCATAGAAATTGAA----------ATGTAGTCGTTT-----------------TGTA---ATAACTGCAAGGGTA---------T-ATAAACTTCGGTTTGCCAAAGTAT-----------------------------------------------------------------------------------------------------------GCT-TCCTTT--CTTGTTTT---------------------------------------------------------------------------------------------------------------------------------------AAGTTTTC----------------T--------------------------------------------------------AT---------------------------------TT
droFic1 scf7180000448834:273-400 - CTTTTTTC---------CC-CCAATTATG---------------------------------------------------------------------------ATTGAATTGA--ACTTGAGTTATTAAAAATGACT-----CCC------------------------------------------------------------------AC----------AC--------------------------------------------------------------------------------------------------------------------------------------------ATTTCTATTTTTAACTTTATTATTTTTAAATTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATTAATTACGTCCACGAA--TGCAG-GCGGCGAAAC---------------------------A
droKik1 scf7180000302476:1213075-1213265 + AACACAAAACTGCTTTCCG-AA------TCGAAATT---A--------------------------------------ATGAATTTTTGGCTTAGTTATG----ATAT--------------------------------------------------------------------------------------------------ATTTTAAT---------------------TGT-----TACCTGCAAGAGTA---------T-ACAAACTTTGGCTGGCCAAAGTTA-----------------------------------------------------------------------------------------------------------GCT-TTCTTT--CTTGTTTTTATTCAAACGGATCATTACTTTATTATAAAGT---------------------------------ATTAT-------------------------------------------------------------TCTTGACC----TTTAAATTAGT---------------------------------------------------TTTT--AAA-ATT---------------------------------TG
droAna3 scaffold_13767:1056027-1056191 - TGAGAAAA---------TTTGTAATATAATATTTTTT-------------------------------AATCT-------T------------------T----TAAAACTTTA--CT-------------------------------------------------------------------------------------------------------------------------------------TTAACA---------T-ATTAATTTAAATTA--------TT-----------------------------------------------------------------------------------------------------------TTT-TTTCG------------------------------------------------------TTTTTTGTTTCTTGCTCTTCTTGTTTTTG-------------------------------------------------------TCGTTTTTAACC----TTTAATTTAATTTATTTATTTAT--------------------GATGCTGCTGACGGCTCCTGA--T------------------------------------------G
droBip1 scf7180000396580:869625-869778 + TGGCTAAA---------TA--ATACG--ACATGCC-A-------------------------------AATTTCATAA-AGATCGGCCAAC---------TATAT-------CCGA-----------------TGTTT-----GCG------------------------------------------------------------------AT----------ACATATCCAG-----TTT-TAACTGCAAGGGTA---------T-ATCAACTTCGGCTTCGCCC-------------------------------------------------------------------------------------------AAAGTTA--------------GCTTTCCTTT--CTTGTTTT---------------------------------------------------------------------------------------------------------------------------------------TAATATTT----CCTT--------TAT-------------------------------------------T---------------------------------------------AT
droPer2 scaffold_388:9870-9973 + ATTTTT---------------------------------T--------------------------------------TTGTATTTTTAATTTAATTATA----ATGT--------------------------------------------------------------------------------------------------TTTTTTATATCT-----------------TTTG-----G----------CACATCTTGTACAATTAATTT--------------TT-----------------------------------------------------------------------------------------------------------GTT-TTCTCT--CTTTTTTT---------------------------------------------------------------------------------------------------------------------------------------TAATTTTA----------------T-------------------------------------------------------TTT---------------------------------GT
droWil2 scf2_1100000004936:1239854-1240088 + AGATCGGA---------CC-ACTATATTGTATAGCTCCC-----------------------------------------------------------------------------------------------------------ATGT-----TAGCTTCTTCGATATTTAGT-TTATAAAT-------------------------------GGT-----------------TTTA-----ATCTGTTTTTATG---------A-ACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGGTTTTTATTTTTATCATCTGCAATTATTATATTATCATTTTCTTCTATACTCACTACCTTATAAGGCCATATATATTTAGCATCTAGTT----TATGACCTATTTCTTTTGTTAACAAGACTTTATCTC------------------CAATTTGTAAAT--CAA-AAT---------------------------------CT
droVir3 scaffold_12963:4726589-4726760 - CTAGTCGA---------GA-GCTTCCGACTAAAACCTCTT-------------------------------------------------------------------------------------------------------------------------ACTTGTTTTTAATT-ATAT--------------------------CTCTCAAT----------ATGTGACTTT-----TTG-TAAC---TTTTGTG--------------CACTTTGATTAGTTTATCGTA-----------------------------------------------------------------------------------------------------------TTT-TTCTTTTGCTGGTTTT---CCAAACTGGATTTGATTT-----------TCGAATAAACC----------------------CTTAT-----------------------------------------------------------------------------------------------------GGTATTTGC----------------------------------------------------------------ACCTTAAAA
droMoj3 scaffold_6496:26204220-26204393 - GGTGCAAA---------TC-GATATAGACCGCCATTGCTTTAAATATTGGTTGCAAATAATATATAGAGATCT-------T------------------T----ATAGATCTAA--CG-----------------------------------------------------------------------------------------------------------------------------------------TATATCTGGCAAGATCAACTGA-------------TT-----------------------------------------------------------------------------------------------------------GTT-TTCTA------------------------------------------------------TATACTGCGCATTGAATGAAATATTCTTA-------------------------------------------------------TTGAATTTTAAA----ATTAAATTAAT---------------------------------------------------TAAT--TAATATT---------------------------------TT
droGri2 scaffold_14592:108511-108643 + ACAACCAA---------TT-T------------------T--------------------------------------ATATTTGATAGATTTATTTATG----TT--------------------------------------------------------------------------------------------------------------GT-----------------TTTA-----AATTAAATTTTTT---------T-TTTATTTTTAATTTTTAAATGAGTTTCTTCCTCTTAATTTTATTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAT-------------------------------------------------------------------TCGTCACATTTTCAATTATG--------AAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGAGCAAA---------TC-GCTATATACCACCATTTCCT--------------------------------------TTGTTTAATAAATTTAATCATA----TGAT--------------------------------------------------------------------------------------------------ATTTCGACATGT-----------------TTTA-----ATCTGCATTTGTA---------C-ATTAGCTTTGGTTTTCCCATAACCCTCTTTCCCTGATTTAAGTGTATTTTATTTTATAACCGAC------GTT-------------------------ATTTTTAATTTGAAAATTAATATTTTTAATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGATGCTTACAGATACTAA--TGCAG-AAGACTGGACAACAGAAACTTTTATGGAACCGATCAAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAA--TGCAG-AAGACTGGACAACAGA......................27114.001400000009140000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACAACAGAAACTTTTATGGAACCGA.....2812.00200000002000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAA--TGCAG-AAGACTGGACAACAGAAAC...................3011.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA--TGCAG-AAGACTGGACAACAGAAAC...................2711.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAA--TGCAG-AAGACTGGACAACAGAAA....................2911.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAGATACTAA--TGCAG-AAGACTGGA.............................2711.00100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGAAACTTTTATGGAACCGAT....2511.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAA--TGCAG-AAGACTGGACAACAGAAAC...................3111.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAA--TGCAG-AAGACTGGACAACAGAA.....................2811.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA--TGCAG-AAGACTGGACAACAGAA.....................2511.00100000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--TGCAG-AAGACTGGACAACAGAAA....................2511.00100000010000000000
......................................................................................................................................................................................................................................................CTGCATTTGTA---------C-ATTAGCTTTGGTTT......................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA--TGCAG-AAGACTGGACAACAGA......................2411.00100000000010000000
..............................................................................................................................................................................................................................................................................................................................................................................ATTTTTAATTTGAAAAT.................................................................................................................................................................................................................................................................................................1740.25100000000001000000
droSec2
GGTGCAAA---------TC-GCTATATACCACCATTTCCT--------------------------------------TTGTTTAATAAATTTAATCATA----TGAT--------------------------------------------------------------------------------------------------ATTTCGACATGT-----------------TTTA-----ATCTGCATTTGTA---------C-ATTATCTTTGGTTTTCCCATGACCCACTTTCCTTGATTTAAGTGTATTTTATTTTATAACCAAC------GTT-------------------------ATTTTTTATTTAAAAATTAATATTTTTAATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGATGCTTACAGATACTAA--TGCAG-AAGACTGGACAACAGAAACTTTTATGGAACCGATCAAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
GGCACAAA---------TC-GCTATATACCAGAATTTTCT--------------------------------------TTGTTTGATAAATTTAGTCATA----TCAT--------------------------------------------------------------------------------------------------ATTTCGACATT------------------TTT-----AAGCAGCAATTGTA---------C-ATAATCTTTGGTTTTCCCATGACC-TCTTTCTTTTGTTTAAATGAATTTTATTTTATAACCAAA------GTTTTAACTTTGTTATAAGATTTTTGTTA-TTCTAATTTTAAAATTAATATTTTTAATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGATGCTTACAGATACTAA--TGCAG-AAGACTGGACAACCGAAACTTTTATGGAACCGATCAAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTGGACAACCGAAAC...................18114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002121800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTGGACAACCGAAACT..................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGACAACCGAAACTTTTAT.............2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTGGACAACCGAAAC...................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTGGACAACCGAAACT..................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGAAACTTTTATGGAACCGATCAAG2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGACAACCGAAACT..................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--TGCAG-AAGACTGGACAACCGAA.....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...........................................................................................................T--------------------------------------------------------------------------------------------------ATTTCGACATT------------------TTT-----AAGCAGCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGATACTAA--TGCAG-AAGACTGGA.............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-AAGACTGGACAACCGAAAC...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAG-AAGACTGGACAACCGAAACT..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTTTATGGAACCGATCA..2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGACAACCGAAACTT.................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACAGATACTAA--TGCAG-AAG...................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGACAACCGAAACTTT................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGAAACTTTTATGGAAC........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAA--TGCAG-AAGACTGGACAACCGAAACTT.................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGATGCTT.........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTGGACAACCGAAACTTTTATGG...........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAA--TGCAG-AAGACTGGAC............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGAAACTTTTATGGAACCGATCAAG2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGACAACCGAAACTTTTATGG...........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--TGCAG-AAGACTGGACAACCGAAACT..................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................TATATACCAGAATTTTCT--------------------------------------TTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTAAATGT---------CT-TTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAGATGTTTTATC-TTTTAATTCTAAAATTAACATTTTTAATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGATGTTTACAGATACTGA--TGCAG-AAGACTGGACCACATAAGCTTTTATGGAACCGATCAAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TAAGACTC----TTTCCCC-ATTTC-------------------------------------------------GTAA-C--------------------AATTT-------TATT-----------------A-----GCTTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAAACCTTTGG-A-TTC---TATAAAAATTAAAATTTTT-ATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTATGTCTACAGGTATTGA--TGCAG-AAGACTGGACCACAGAAACTTTTATGGAACCGATCAAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
CTCTTTAC---------CT-ACTACG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGCATTATAACCTTTTACCTCCCTAGTAAAT-------------------------ATTTTTAATTAAAAAACTATATTTTTTAATTTA-------------------------------------GATA-----------ACAA----------------------------------------------------------------------------------------------------------------------------------------------------------ATTAATTCAAATCGTAA--TACAA-AAT---------------------------------ACSizeHit CountTotal NormTotal
No Reads
droBia1
GAAGTCAG---------CA-GCAATCTTTAAAAATTT---------------------------------------------------------------------------CA--CATGGTGTTACTAAAATT----------------------------------------------------------------------------------GATTATTT----------CTTA-----TATATGCAAGGGTA---------T-ACAAACTTCGGCTTGCCGAAGTTA-----------------------------------------------------------------------------------------------------------ACT-TTCTTT---TTGTTTAGTTT-------TGCTTTAAAT----A------TACAATAAATT--------------------TTGTTTC-------------------------------------------------------------TGTTTATT----TTAGAAATGGT---------------------------------------------------TATT--ATT-AAA---------------------------------TTSizeHit CountTotal NormTotal
No Reads
droTak1
CGTTTTGA---------TT-TCTGACAAC-------------------------------------------------------------TTAAA----A----TGGT--------------------------------------------------------------------------------------------------ATTT------------------------CTTT-----TATCTGCAATGGTA---------T-ATAAGCTTCGGCTGGCCT---------------------------------------------------------------------------------------------------------------------TCCTTT--CTTGTTTTT--T-------AACT---------TAAAAAAC---------------------------------ATT-------------------------------------------------------------TTTTTTAACC----CAAAGTCGAGTTTTCTTATCTGAAAAACGATTTTTTCACTTTGAAAA-------------------------------------------------------------ATSizeHit CountTotal NormTotal
No Reads
droEle1
AAAATAAC---------TA-T-------------------------------------------------------------------------------------------CAAA-----------------TAATTGAGCTGCAA-ATCATCATAGCTTCAATGTTTTTAAAC-TTATACGCAAGTAAATTATAATTTTAATGTTTTCAAAAATGTTTAATT----------CTTG-CA-ATAGCTGCAAGGGTA---------T-ATGAACTTCGGCTTGCCGAAGTTT-----------------------------------------------------------------------------------------------------------GCT-TTCTTT--CTTGTTTTAGTT-------AACTTTACTTCATAGTAAAAT------ATTTT--------------------TTA-----------------------------------------------------------------ACTT---------------GAGGTTTTTAAACGG---------------------GAAGATTTCTTTAAATACTTA--T-------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CGGACAAC--------------------------------------------------------------------------------------------AATAT-------CATA-----------------T-----AGCTGCCATAAAAACGTAGCTTCATTGTTTTTTAGTAATATAGGCATAGAAATTGAA----------ATGTAGTCGTTT-----------------TGTA---ATAACTGCAAGGGTA---------T-ATAAACTTCGGTTTGCCAAAGTAT-----------------------------------------------------------------------------------------------------------GCT-TCCTTT--CTTGTTTT---------------------------------------------------------------------------------------------------------------------------------------AAGTTTTC----------------T--------------------------------------------------------AT---------------------------------TTSizeHit CountTotal NormTotal
No Reads
droFic1
CTTTTTTC---------CC-CCAATTATG---------------------------------------------------------------------------ATTGAATTGA--ACTTGAGTTATTAAAAATGACT-----CCC------------------------------------------------------------------AC----------AC--------------------------------------------------------------------------------------------------------------------------------------------ATTTCTATTTTTAACTTTATTATTTTTAAATTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATTAATTACGTCCACGAA--TGCAG-GCGGCGAAAC---------------------------ASizeHit CountTotal NormTotal
No Reads
droKik1
AACACAAAACTGCTTTCCG-AA------TCGAAATT---A--------------------------------------ATGAATTTTTGGCTTAGTTATG----ATAT--------------------------------------------------------------------------------------------------ATTTTAAT---------------------TGT-----TACCTGCAAGAGTA---------T-ACAAACTTTGGCTGGCCAAAGTTA-----------------------------------------------------------------------------------------------------------GCT-TTCTTT--CTTGTTTTTATTCAAACGGATCATTACTTTATTATAAAGT---------------------------------ATTAT-------------------------------------------------------------TCTTGACC----TTTAAATTAGT---------------------------------------------------TTTT--AAA-ATT---------------------------------TGSizeHit CountTotal NormTotal
No Reads
droAna3
TGAGAAAA---------TTTGTAATATAATATTTTTT-------------------------------AATCT-------T------------------T----TAAAACTTTA--CT-------------------------------------------------------------------------------------------------------------------------------------TTAACA---------T-ATTAATTTAAATTA--------TT-----------------------------------------------------------------------------------------------------------TTT-TTTCG------------------------------------------------------TTTTTTGTTTCTTGCTCTTCTTGTTTTTG-------------------------------------------------------TCGTTTTTAACC----TTTAATTTAATTTATTTATTTAT--------------------GATGCTGCTGACGGCTCCTGA--T------------------------------------------GSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................TT-----------------------------------------------------------------------------------------------------------TTT-TTTCG------------------------------------------------------TTTTTTGTTTCTTGC...................................................................................................................................................................................................2511.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTG-------------------------------------------------------TCGTTTTTAACC----TT............................................................................................................2011.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTGCTGACGGCTCCTGA--T------------------------------------------G23200.102200000
droBip1
TGGCTAAA---------TA--ATACG--ACATGCC-A-------------------------------AATTTCATAA-AGATCGGCCAAC---------TATAT-------CCGA-----------------TGTTT-----GCG------------------------------------------------------------------AT----------ACATATCCAG-----TTT-TAACTGCAAGGGTA---------T-ATCAACTTCGGCTTCGCCC-------------------------------------------------------------------------------------------AAAGTTA--------------GCTTTCCTTT--CTTGTTTT---------------------------------------------------------------------------------------------------------------------------------------TAATATTT----CCTT--------TAT-------------------------------------------T---------------------------------------------ATSizeHit CountTotal NormTotal
No Reads
droPer2
ATTTTT---------------------------------T--------------------------------------TTGTATTTTTAATTTAATTATA----ATGT--------------------------------------------------------------------------------------------------TTTTTTATATCT-----------------TTTG-----G----------CACATCTTGTACAATTAATTT--------------TT-----------------------------------------------------------------------------------------------------------GTT-TTCTCT--CTTTTTTT---------------------------------------------------------------------------------------------------------------------------------------TAATTTTA----------------T-------------------------------------------------------TTT---------------------------------GTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................TATATCT-----------------TTTG-----G----------CACATCTTGTACAAT..................................................................................................................................................................................................................................................................................................................................................................................................................2712.002020000
...........................................................................................................T--------------------------------------------------------------------------------------------------TTTTTTATATCT-----------------TTTG-----G----------CACATCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.......................................................................................................................................................................................................................TCT-----------------TTTG-----G----------CACATCTTGTACAATTAAT..............................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
....................................................................................................................................................................................................................ATATCT-----------------TTTG-----G----------CACATCTTGTACAAT..................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
..............................................................................................................................................................................................................TTTTTTATATCT-----------------TTTG-----G----------CACATCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
..................................................................................................TA----ATGT--------------------------------------------------------------------------------------------------TTTTTTATATCT-----------------TTTG-----G----------CACA.............................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
...............................................................................................................................................................................................................TTTTTATATCT-----------------TTTG-----G----------CACATCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
......................................................................................................................................................................................................................................................................TGTACAATTAATTT--------------TT-----------------------------------------------------------------------------------------------------------GTT-TTCTCT--CT...................................................................................................................................................................................................................................................................2711.001010000
.....................................................................................................................................................................................................................TATCT-----------------TTTG-----G----------CACATCTTGTACAAT..................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.....................................................................................................................................................................................................................TATCT-----------------TTTG-----G----------CACATCTTGTACAATTAA...............................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
.......................................................................................................................................................................................................................TCT-----------------TTTG-----G----------CACATCTTGTACAATTAATT.............................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
...............................................................................TGTATTTTTAATTTAATTATA----ATGT--------------------------------------------------------------------------------------------------T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.........................................................................................................TGT--------------------------------------------------------------------------------------------------TTTTTTATATCT-----------------TTTG-----G----------CACATCT..........................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
..............................................................................................................................................................................................................TTTTTTATATCT-----------------TTTG-----G----------CACATCT..........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
droWil2
AGATCGGA---------CC-ACTATATTGTATAGCTCCC-----------------------------------------------------------------------------------------------------------ATGT-----TAGCTTCTTCGATATTTAGT-TTATAAAT-------------------------------GGT-----------------TTTA-----ATCTGTTTTTATG---------A-ACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGGTTTTTATTTTTATCATCTGCAATTATTATATTATCATTTTCTTCTATACTCACTACCTTATAAGGCCATATATATTTAGCATCTAGTT----TATGACCTATTTCTTTTGTTAACAAGACTTTATCTC------------------CAATTTGTAAAT--CAA-AAT---------------------------------CTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACAAGACTTTATCTC------------------CAATT...................................................2721.00202000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTATACTCACTACCTTATAAGGCCATA....................................................................................................................................2921.00202000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATTTAGCATCTAGTT----TATGACC.......................................................................................................27120.9211010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTTAGCATCTAGTT----TATGACC.......................................................................................................25130.54706010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCTATTTCTTTTGTTAACAAGACT.................................................................................2720.50101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTAGCATCTAGTT----TATGACCTAT....................................................................................................26140.43606000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTATCTC------------------CAATTTGTAAAT--CAA-AAT---------------------------------C.2830.33101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATACTCACTACCTTATAAGGCC.......................................................................................................................................25140.29404000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCATCTAGTT----TATGACCT......................................................................................................21180.22413000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCTATACTCACTACCTT...............................................................................................................................................21140.21303000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTTTCTTCTATACTCACTACCT................................................................................................................................................25110.18202000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTTTCTTCTATACTCACT....................................................................................................................................................21120.17202000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTTAGCATCTAGTT----TATGACCTAT....................................................................................................28130.15202000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTAGCATCTAGTT----TATGACCTATT...................................................................................................27130.15202000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTATACTCACTACCTTATA............................................................................................................................................21140.14202000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGCATCTAGTT----TATGACC.......................................................................................................21170.12202000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATCATCTGCAATTATTATAT...........................................................................................................................................................................2490.11100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTT----TATGACCTATTTCTTT..............................................................................................21190.11202000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTTTCTTCTATACTCACTACCTTA..............................................................................................................................................27110.09101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTTCTTCTATACTCACTACCT................................................................................................................................................24110.09101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTTCTTCTATACTCACTA...................................................................................................................................................21110.09101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTTAGCATCTAGTT----TATGACC.......................................................................................................26120.08101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCACTACCTTATAAGGCC.......................................................................................................................................21140.07101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTATACTCACTACCTTATAAGGC........................................................................................................................................27140.07101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTCTATACTCACTACCTTATAAGGC........................................................................................................................................29140.07101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTATACTCACTACCTTATAAGGC........................................................................................................................................25140.07101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTAGCATCTAGTT----TATG..........................................................................................................20140.07100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCTATACTCACTACCTTATAAG..........................................................................................................................................26140.07101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCTTCTATACTCACTACC.................................................................................................................................................22140.07101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTATACTCACTACCT................................................................................................................................................18140.07101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTAGCATCTAGTT----TATGACC.......................................................................................................24140.07101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTAGCATCTAGTT----TATGACCTA.....................................................................................................25140.07101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCTATACTCACTACCTTATAAGG.........................................................................................................................................27140.07101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTCACTACCTTATAAGGCC.......................................................................................................................................23140.07101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTATACTCACTACCTTATAAGGCC.......................................................................................................................................26140.07101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGCATCTAGTT----TATGACCTATTTCT................................................................................................28160.06101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCATCTAGTT----TATGACCTATTTCT................................................................................................26170.06101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCATCTAGTT----TATGACCTATTTCTT...............................................................................................27170.06101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCATCTAGTT----TATGACCTA.....................................................................................................21180.06101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTAGTT----TATGACCTAT....................................................................................................20190.05101000
droVir3
CTAGTCGA---------GA-GCTTCCGACTAAAACCTCTT-------------------------------------------------------------------------------------------------------------------------ACTTGTTTTTAATT-ATAT--------------------------CTCTCAAT----------ATGTGACTTT-----TTG-TAAC---TTTTGTG--------------CACTTTGATTAGTTTATCGTA-----------------------------------------------------------------------------------------------------------TTT-TTCTTTTGCTGGTTTT---CCAAACTGGATTTGATTT-----------TCGAATAAACC----------------------CTTAT-----------------------------------------------------------------------------------------------------GGTATTTGC----------------------------------------------------------------ACCTTAAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
GGTGCAAA---------TC-GATATAGACCGCCATTGCTTTAAATATTGGTTGCAAATAATATATAGAGATCT-------T------------------T----ATAGATCTAA--CG-----------------------------------------------------------------------------------------------------------------------------------------TATATCTGGCAAGATCAACTGA-------------TT-----------------------------------------------------------------------------------------------------------GTT-TTCTA------------------------------------------------------TATACTGCGCATTGAATGAAATATTCTTA-------------------------------------------------------TTGAATTTTAAA----ATTAAATTAAT---------------------------------------------------TAAT--TAATATT---------------------------------TTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ACAACCAA---------TT-T------------------T--------------------------------------ATATTTGATAGATTTATTTATG----TT--------------------------------------------------------------------------------------------------------------GT-----------------TTTA-----AATTAAATTTTTT---------T-TTTATTTTTAATTTTTAAATGAGTTTCTTCCTCTTAATTTTATTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAT-------------------------------------------------------------------TCGTCACATTTTCAATTATG--------AAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 07:07 PM