ID:

dsi_28288

Coordinate:

2r:5034477-5034626 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-8.9	-8.5	-8.2

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

mature

star

Sense Strand Reads

CAAAACATCTTCGTCGATTTTGGCAACCGATTGCGAATCTCTAAATAACGGTAAATATCTCTAGTATTTGATTTCAGCTCTTGTGACGATTAGTTAATATAATAATTTTAAATGAAATGGTATGTTTGAAAAAGTATATCATGCAATTGACTTTTACATGATCATTGTTACTTCGAAATCTTTTATGAGGACCAATTTAAATAATAATTATAAATGGTCTTTCCAATAGTCCAAAACACTTTTCTTCATA ********************************************************************.....................(((((((..............((..(((((((((((....))))))))))).)))))))))...*********************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M025 embryo	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M023 head	SRR553485 Chicharo_3 day-old ovaries
............................................................................................................................................ATGCAATTGACTTTTAAA............................................................................................	18	1	4	1.25	5	4	0	0	0	1	0	0
......................................................................ATTTCAGCTCTTGTGACGA.................................................................................................................................................................	19	0	1	1.00	1	0	0	1	0	0	0	0
.......................................................................TCTCGGCTCTTGTTACGA.................................................................................................................................................................	18	3	20	0.60	12	1	11	0	0	0	0	0
......................................................................ATCTCGGCTCTTGTTACGA.................................................................................................................................................................	19	3	7	0.43	3	1	2	0	0	0	0	0
.....................................................................................................ATAATTTTGAACGAAATGGT.................................................................................................................................	20	2	3	0.33	1	0	0	0	1	0	0	0
.........................................................................TCGGCTCTTGTTACGA.................................................................................................................................................................	16	2	13	0.31	4	2	1	0	0	1	0	0
................................................................................................................TGCAATGGAACGTTTGAAAA......................................................................................................................	20	3	20	0.30	6	6	0	0	0	0	0	0
.......................................................................TCTCGGCTCTTGTTACGAT................................................................................................................................................................	19	3	14	0.21	3	0	3	0	0	0	0	0
....................................................................................................................................................................................TTTTCTGAGGACCAATT.....................................................	17	1	5	0.20	1	0	0	0	1	0	0	0
...................................................................................................................AATGGTATGTTTGAATATG....................................................................................................................	19	2	12	0.17	2	0	0	0	0	0	2	0
............................................................................................................................................ATGCAATTGACTTTTAA.............................................................................................	17	1	12	0.17	2	1	1	0	0	0	0	0
............................................................................................................................................ATGCAATTGACTTTT...............................................................................................	15	0	6	0.17	1	0	0	0	0	0	0	1
..........................................................................CGGCTCTTGTTACGATGA..............................................................................................................................................................	18	3	20	0.15	3	0	3	0	0	0	0	0
................................................................................................................TGCAATGGAACGTTTGAAAAA.....................................................................................................................	21	3	7	0.14	1	1	0	0	0	0	0	0
.........................................................................TCGGCTCTTGTTACGATGA..............................................................................................................................................................	19	3	8	0.13	1	0	1	0	0	0	0	0
..........................CCGATAGCGACTCTCAAAA.............................................................................................................................................................................................................	19	3	20	0.05	1	1	0	0	0	0	0	0

Anti-sense strand reads

GTTTTGTAGAAGCAGCTAAAACCGTTGGCTAACGCTTAGAGATTTATTGCCATTTATAGAGATCATAAACTAAAGTCGAGAACACTGCTAATCAATTATATTATTAAAATTTACTTTACCATACAAACTTTTTCATATAGTACGTTAACTGAAAATGTACTAGTAACAATGAAGCTTTAGAAAATACTCCTGGTTAAATTTATTATTAATATTTACCAGAAAGGTTATCAGGTTTTGTGAAAAGAAGTAT *********************************************************************************************.....................(((((((..............((..(((((((((((....))))))))))).)))))))))...********************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR902008 ovaries
.............................................................................................................................................ACGTTAACTGAAAATGTACTTCAAACAAT................................................................................	29	3	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................TTCATATAGTGTGTTAACTGAGA................................................................................................	23	3	1	1.00	1	0	1	0	0	0	0
.............................................................ATCATAAACTAAAGT..............................................................................................................................................................................	15	0	3	0.33	1	0	0	1	0	0	0
..............................................................................AGAACACCGCTATTCAA...........................................................................................................................................................	17	2	9	0.11	1	0	0	0	1	0	0
..............................AATGCTTAGAGATTT.............................................................................................................................................................................................................	15	1	10	0.10	1	0	0	0	0	1	0
............................AGAAGGCTTAGAGATTTAT...........................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1

Generated: 04/23/2015 at 09:19 AM