ID:

dsi_28283

 Coordinate:

3l:8112906-8113055 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.4 -40.2 -40.2

Flybase annnotation

CDS [3l_8113056_8113121_-]; exon [3l_8113056_8113485_-]; intron [3l_8112578_8113055_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGGATCTGTACGCAGAGGACCTCGACAAGGACTTTGCCGGGCAGGCTCAGGTAAGCCATGGGAAAAAGGCAGTCGCTCTGCAAGCCGCGTGTGTATGTATACAGTAGGGTGGATCGATGTCCGAAAGAATTGCGTTAGGGGGTAGAACGGCGTCTTGGGCGAGCTCGACCACTCGGTACCCTGTAAAGTAGGGTTCTAGAAACTGAGTGCAGGGATATATATTAATATAAACATGAAACGAATTAATAAC
**************************************************....((((((((......((((.....))))...)).)))).))............((((((.((((((((((..(((....((((.........))))...)))))))))...))))))))))((.((((((.....)))))).))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR902009
testis
...........................................................................................................................................GGGTAGAACGGCCTCTAGTGC.......................................................................................... 21 3 1 2.00 2 0 0 0 0 0 0 1 1 0 0
.............................................................................................................................................GTAGAACGGCCTCTAG............................................................................................. 16 2 8 1.88 15 0 8 0 0 0 6 1 0 0 0
.....GTGTACGCAGAGGACCTCGACAAGGA........................................................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................CTCGACAAGGACTTTGCCGGG................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..GATCTGTACCCGGAGGACC..................................................................................................................................................................................................................................... 19 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....TCTGTACGCAGAGGACCTCGACAAGGA........................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..............GAGGACCTCGACAAGGA........................................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................ACAAGGACTTTGCCGGGCAGGCTC.......................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............GAGGACCTCGACAAGGAC.......................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................GAATTGCGTTAGGGGGTAGAACG..................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................ACAAGGACTTTGCCGGAC................................................................................................................................................................................................................ 18 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................ACAAGGACTTTGCCGGGCAGGCT........................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
TGGATCTGTACGCAGAGGACCTCGACA............................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.....................TCGACAAGGACTTTGCCGGGCAGGCTCA......................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CGGTACCCGGTAAAG.............................................................. 15 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0
.......................GAGTAGGACGTTGCCGGGC................................................................................................................................................................................................................ 19 3 12 0.33 4 0 2 1 0 0 1 0 0 0 0
.........................................................................................................................................CCGGGTAGAACGGCCTCT............................................................................................... 18 3 15 0.27 4 0 0 0 0 0 0 1 0 0 3
..............................................................................TTCAAGCCGCGTGTGTA........................................................................................................................................................... 17 1 4 0.25 1 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................GGGTAGAACGGCCTCTA.............................................................................................. 17 2 4 0.25 1 0 0 0 0 0 0 1 0 0 0
...............................................................AAAAGGCAGTTGCTCT........................................................................................................................................................................... 16 1 5 0.20 1 0 0 0 0 0 0 0 0 1 0
...............................................................................................................GATCGATGTCTGACAGAA......................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................ACTGAGTGAAGGGAT.................................. 15 1 7 0.14 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................GGTAGAACGGCCTCTAGTG........................................................................................... 19 3 8 0.13 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................ACCGATGTCCGAAAGA.......................................................................................................................... 16 1 9 0.11 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................GTAGAACGGCCTCTAGTGC.......................................................................................... 19 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0
.......................GAGTAGGACTTTGCCAGGC................................................................................................................................................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACCTAGACATGCGTCTCCTGGAGCTGTTCCTGAAACGGCCCGTCCGAGTCCATTCGGTACCCTTTTTCCGTCAGCGAGACGTTCGGCGCACACATACATATGTCATCCCACCTAGCTACAGGCTTTCTTAACGCAATCCCCCATCTTGCCGCAGAACCCGCTCGAGCTGGTGAGCCATGGGACATTTCATCCCAAGATCTTTGACTCACGTCCCTATATATAATTATATTTGTACTTTGCTTAATTATTG
**************************************************....((((((((......((((.....))))...)).)))).))............((((((.((((((((((..(((....((((.........))))...)))))))))...))))))))))((.((((((.....)))))).))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
.........TGCGTCTCTCGGAGCTGTTCAT........................................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0
....................................GGCCCGTCCGAGTCC....................................................................................................................................................................................................... 15 0 1 1.00 1 1 0 0 0
........................................................................AGCGAGACGTCCGGTGCAC............................................................................................................................................................... 19 2 2 0.50 1 0 0 1 0
........................................................................................................................GGCTTCCTTAACGGAATC................................................................................................................ 18 2 3 0.33 1 1 0 0 0
....................................................................................................................................................................AGCTGGTGAGCCGTG....................................................................... 15 1 10 0.10 1 1 0 0 0
............................................................................................................................................................CCCGCTCGAGATGGTGACT........................................................................... 19 3 15 0.07 1 0 0 0 1
....................GGGCTGTTCCTGAAGCG..................................................................................................................................................................................................................... 17 2 20 0.05 1 1 0 0 0

Generated: 04/24/2015 at 10:42 AM