ID:

dsi_28274

 Coordinate:

2r:5781104-5781159 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5780339_5781103_+]; CDS [2r_5780339_5781103_+]; CDS [2r_5781160_5781487_+]; exon [2r_5781160_5781487_+]; intron [2r_5781104_5781159_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------##################################################
GAGACCGAGGAATCTCTGACCAGGTCCGACAACATTAGGCTGGAAAGATCGTAAGTTCCTCTTCATACGAGTTAACTTTGGATAATAGCCCAGACACCTTGCCAAGGACGGATACGTCTATTTTGGATGCGGCCGCCTCGGGAGCTGCAGCAGCCT
**************************************************.................((((.....(((((........)))))...)))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
...............................................................................................ACCTTGCCAAGGTCGG............................................. 16 1 2 2.50 5 4 0 0 0 1 0 0 0
................................CATTAGGCTGGAAAGATC.......................................................................................................... 18 0 1 2.00 2 0 2 0 0 0 0 0 0
.......................GTCCGACAACATTAAGCTGGAAAGCT........................................................................................................... 26 2 1 1.00 1 0 0 0 1 0 0 0 0
............................................AAGATCGTGAGTTCCCCT.............................................................................................. 18 2 2 1.00 2 0 0 2 0 0 0 0 0
...............................................................................................ACCTTGCCAAGGTCG.............................................. 15 1 7 0.86 6 6 0 0 0 0 0 0 0
................................................................................................CCTTGCCAAGGTCGG............................................. 15 1 7 0.43 3 1 0 0 0 1 1 0 0
............................................AAGATCGTGAGTTCCCCCTCA........................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0
...............................................................................................ACCTTGCCAAGGTCGGG............................................ 17 2 8 0.25 2 1 0 0 0 0 1 0 0
..........................................GCAAGATCGTGAGTTCCCCT.............................................................................................. 20 3 4 0.25 1 0 1 0 0 0 0 0 0
....................................................AAGTTGTTCTTCATACGA...................................................................................... 18 2 5 0.20 1 0 0 0 0 0 1 0 0
...............................................................................................ACCTTGCCAAGGTCGGAG........................................... 18 2 6 0.17 1 1 0 0 0 0 0 0 0
..............TCTTACCAGGTCCGA............................................................................................................................... 15 1 13 0.08 1 0 0 0 1 0 0 0 0
...............................................................CATACGAGTTAAACTTCGA.......................................................................... 19 3 13 0.08 1 0 0 0 0 0 0 1 0
...............................................................CATACGGGTTAAATTTCGA.......................................................................... 19 3 14 0.07 1 0 0 0 0 0 0 1 0
...............................................................CGTACGGTTTAACTTTGGA.......................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 1 0
..........AATCTCCGTCCAGGTCCGG............................................................................................................................... 19 3 16 0.06 1 1 0 0 0 0 0 0 0
........GTATTCTCTGACCAGG.................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1
...............................................................TATCAGAGTTAACTTTGGA.......................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0
...............................................................CATAAGAGTTAACTTTCGT.......................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0

Anti-sense strand reads

CTCTGGCTCCTTAGAGACTGGTCCAGGCTGTTGTAATCCGACCTTTCTAGCATTCAAGGAGAAGTATGCTCAATTGAAACCTATTATCGGGTCTGTGGAACGGTTCCTGCCTATGCAGATAAAACCTACGCCGGCGGAGCCCTCGACGTCGTCGGA
**************************************************.................((((.....(((((........)))))...)))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
................ACTGCTCCAGGCTGTAGTAC........................................................................................................................ 20 3 3 0.33 1 1 0 0
..............AGAGTGGTCCAGGCCGT............................................................................................................................. 17 2 7 0.14 1 0 0 1
...............GACTGGACCAGGCTGT............................................................................................................................. 16 1 9 0.11 1 0 1 0
.................................................................................................AAACGGTCCCTGCCTAT.......................................... 17 2 14 0.07 1 0 1 0
...................................................................................................AAGGTCCCTGCCTATGCG....................................... 18 3 20 0.05 1 1 0 0

Generated: 04/23/2015 at 10:33 PM