ID:

dsi_28268

 Coordinate:

2r:21341781-21341953 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.3 -8.0 -8.0

Flybase annnotation

CDS [2r_21341999_21342134_-]; three_prime_UTR [2r_21341808_21341998_-]; exon [2r_21341808_21342134_-]

No Repeatable elements found

Sense Strand Reads

####################################################################################################################################################################################################-----------------------------------------------------------------------------
ATTGACGCGTTAATTATTAGATGAAGAAAAAGTTTAATCGCAGGAAGAAGGTGATGATGATGAAGAGCAAAATAAACGATTATATTTAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTAAAACGTAAACAAAAAACCAACATTTTTATAACGACAAAACTTAAACAATGTTGTAAACACATGAACACTCAAGAATTTTCGCATCCCTCGAATGGCTGCGTGTTTAAGTAGTCAACGAAATCA
****************************************************************************************.(((((..(((((((((...............)))))))))......................................(((((((((((.............)))).))))))).........)))))..****************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 M024
male body		 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 GSM343915
embryo
 SRR902009
testis
 M025
embryo
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
...................................................................................................................................................................................................................................TTCGCATCCCTCGAATGGCTG......................... 21 0 1 13.00 13 9 0 0 0 3 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................TGTTGTAAACACATGAACACT...................................................... 21 0 1 7.00 7 5 0 0 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGTAAACACATGAACACTCAAGAATT.............................................. 26 0 1 5.00 5 0 0 3 0 0 0 2 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................TCCCTCGAATGGCTGCGTGTTTAAGT.............. 26 0 1 2.00 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................TGGCTGCGTGTTTAAGTAGTC.......... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTAATCGCAGGAAGAAG............................................................................................................................................................................................................................... 17 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CACATGAACACTCAAGAATTT............................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................TCCCTCGAATGGCTGCGTGT.................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGTAAACACATGAACACTTAAGAATT.............................................. 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ATGTTTCTTTTATATAATTTCTCTGT............................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TTATACATACTTAAATTAAAACGTA.................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............ATTAGATGAAGAAAAAGT................................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................GTAAACACATGAACACTCAAGAATTTT............................................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AACACATGAACACTCAAGAATTTTCGCA........................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................ATTTTCGCATCCCTCGAA............................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GACAAAACTTAAACAATGT........................................................................ 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................ATCCCTCGAATGGCTGCGTG..................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................ATTTTTATAACGACAAAACTTAAA.............................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................TCCCTCGAATGGCTGCGTGTTTAAG............... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................GTTTCTTTTATATAATTTCTC.................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................TCGAATGGCTGCGTGTTTAAG............... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................TGTAAACACATGAACACTC..................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................TTAATCGCAGGAAGAAGGTGATGA........................................................................................................................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TATTTAATGTTTCTTTTAT............................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TTCGCATCCCTCGAATGGC........................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................ATTTCTCTGTTATTTTTTATA.................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AACACATGAACACTCAAGAATTTCCGCC........................................ 28 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................TCAAGAATTTTCGCATCCCTCGAAT.............................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TGTTGTAAACACATGAACACC...................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................ATGAAGAGCAAAATAAACGATT................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................CGAATGGCTGCGTGTTTAAGT.............. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CACATGAACACTCAAGAATTTTCGCATC...................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGTAAACACATGAACACTCAAGAAT............................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AAACACATGAACACTCAAGAATTTCCGCA........................................ 29 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................TCTCTGTTATTTTTTATATAAACTATTA.......................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................TTAATCGCAGGAAGAAGGTGA........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGAACACTCAAGAATTTCCGCATCCCTC.................................. 28 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................CATACTTAAATTAAAACGT..................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GACAAAACTTAAACAATGTTGT..................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TTCGCATCCCTCGAATGGCTGCGTGT.................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGATGATGAAGAGCAAAATAAACGA.................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................CGCAGGAAGAAGGTGATGATGATGA.................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................TTTCTCGGCTATTATTTATATAAA................................................................................................................................................ 24 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................GATGATGGTGAGGAGCAAAAT........................................................................................................................................................................................................ 21 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................AGAGCAAAATGAACGATAAGAT............................................................................................................................................................................................ 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................AAGAAAGTGATGAGAATGAAGA............................................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................................................TACGTAGTCAACGAAA... 16 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............ATTATTAGAGGAAGTAAAAGTC............................................................................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................AAAACGTAAACAAAAAAGCTAC...................................................................................................... 22 2 7 0.29 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0
......................................................................................TAATGTTTTTTTTATATA......................................................................................................................................................................... 18 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...................................................TGATGATGATGATGAGCAAA.......................................................................................................................................................................................................... 20 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TAATTGCTCTGTTATT........................................................................................................................................................... 16 1 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................GAAGAAGTTGATTATGGTGA.................................................................................................................................................................................................................. 20 3 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ACATTTTTATATCGTCAAA..................................................................................... 19 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................ACTTTTCGGATCCCTCGAA............................... 19 2 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGATGGTGACGAAGAGC............................................................................................................................................................................................................. 18 2 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGATGATGATGAAGGGCA............................................................................................................................................................................................................ 18 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGATGATGATGATGAGCAA........................................................................................................................................................................................................... 19 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........TGATTATTAGAGGAAGTAAA................................................................................................................................................................................................................................................... 20 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................ATGATGATGAAGGGCAAT.......................................................................................................................................................................................................... 18 2 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TCTGTTATTTTTGAT..................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................GTGATGATGATGAATA............................................................................................................................................................................................................... 16 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................ATTTGATCGCAGTAAGAAG............................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................AATTAAAACATGAACAAAAA............................................................................................................ 20 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................TAAGATGAAGAGCAAATTAAA..................................................................................................................................................................................................... 21 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TAACTGCGCAATTAATAATCTACTTCTTTTTCAAATTAGCGTCCTTCTTCCACTACTACTACTTCTCGTTTTATTTGCTAATATAAATTACAAAGAAAATATATTAAAGAGACAATAAAAAATATATTTGATAATATGTATGAATTTAATTTTGCATTTGTTTTTTGGTTGTAAAAATATTGCTGTTTTGAATTTGTTACAACATTTGTGTACTTGTGAGTTCTTAAAAGCGTAGGGAGCTTACCGACGCACAAATTCATCAGTTGCTTTAGT
******************************************************.(((((..(((((((((...............)))))))))......................................(((((((((((.............)))).))))))).........)))))..**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 M053
female body
 O001
Testis
 O002
Head
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
.......................................................................................................................................................................................................................................GTAGGGAGCTTACCGACGCAC..................... 21 0 1 4.00 4 1 3 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TAGGGAGCTTACCGACGCACA.................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GTAGGGAGCTTACCGACGCACA.................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TATGAATTTAATTTTGCAT.................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................ATATATTTTATGATATGTATGAA................................................................................................................................. 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................TTACAACATTTGTGTACTTGT........................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................ACAAAGAAAATATATTAAAGA................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................TTTGCATTTGTTTTTTGGTTG...................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................AATAGATTAAAGAGACGAT............................................................................................................................................................. 19 2 5 0.20 1 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................AAAAATGCATCAGTTGCTT.... 19 2 5 0.20 1 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................TTTTTGGTTGTAAAA................................................................................................. 15 0 5 0.20 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................TTGTTTTTTGGTTGT..................................................................................................... 15 0 11 0.18 2 0 0 0 0 0 0 1 1 0 0
.......................................CGTCCTTCTTCCACGATCAC...................................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................................................CGCATAAATTCAGCAG.......... 16 2 20 0.10 2 0 0 0 0 0 0 0 0 0 2
.............................................................................................................................................................TTTTTTTCTGGTTGTAAAA................................................................................................. 19 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0
...............................................................................................AAAAAAGATTAAAGAGACGAT............................................................................................................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................CAAATTCTTCTGTTGCTAT... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:21341731-21342003 - dsi_28268 ATTGACGCGTTAATTATTAGATGAAGAAA---------------AAGTTTAATC---------------GCAGGA---AGAAGGTGATGATGATGAAGAGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AAACGTAAACAAA--AAAC------------------CAACATTTTTATAACGACAAA--ACTTAAAC----------------------------------------------AATGTTGTAAA-CACA-------------------------------------------------TGA------ACACTCA---------------AGAA--TTTT-CG--CATCCCTCGA--ATGGCTGCGTGTTT----------------------------AAGTAGTCAACGAA---ATCA
droSec2 scaffold_23:735276-735549 - ATTGACGCGTTAAATATTAGATGGAGAAA---------------AAGTTTAATC---------------GCAGGA---AGAAGGTGATGATGATGAAGAGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AAACGTAAACAAA-AAAAC------------------CAACATTTTTATAACGACAAA--ACTTAAAC----------------------------------------------AATGTTGTAAA-CACA-------------------------------------------------TGA------ACACTCA---------------AGAA--TTTT-CG--CATCCCTTGA--ATGGCTGCGTGTTT----------------------------AAGTAGTCAACGAA---ATCA
dm3 chr2R:20878383-20878664 - ATTGACGCGTTAATTATTAGATGAAGAAA---------------AAGTTGAATC---------------GCAGGA---AGAAGGTGATGATG---AAGAGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AAACGTAAACGAA-AAAAC------------------CAACATTTTTATAACGACAAA--ACTTAAAC------AA-----------------------AAAAAAA----AAACAATGTTGTAAA-CACA-------------------------------------------------C--------ACACTCA---------------AGAA--TTTT-CG--CATCCCTCGA--ATGACGGCGTATTT----------------------------AAGTGGTCAACGAA---ATCA
droEre2 scaffold_4845:22253205-22253483 - ATTGACGCGTTAATTATTAGATGAAGAAA---------------AAGTTGAAGC---------------GCAGGC---AGAAGGCGATGATG---GAGAGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AAACGTAAACAAAGAAAAC------------------CAACATTTTTATAACGACAAA--ACTTAAAC------AA-----------------------GA---------AGAAAATGTTGTAAAACACA---------------------------------------------------A------ACACTCA---------------AGAA--TTTT-CG--CATCCCTCGA--ATGGCTGCGTCTTT----------------------------AAGCAGCCAACGAA---ATCA
droYak3 2R:20842769-20843047 - ATTGACGCGTTAATTATTAGAGGAAGAAA---------------AAGTTGAAGC---------------GCAGGA---AGAAGGTGATGATG---AAGAGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AAACGTAAACAAAGAAAAC------------------CAACATTTTTATAACGACAAC--ACTTAAAC------AA-----------------------AA---------AGAAAATGTTGTAAAACACA---------------------------------------------------A------ACACTCA---------------AGAA--TTTT-CG--CATCCCTCGA--ATGGCCGCGTGTTT----------------------------AAGCAGTCAACGAA---ATAA
droEug1 scf7180000409464:1444758-1445047 + ATTGACGAGTTAATTATTAAATGAACATA---------------AAGTTGAAGC---------------GGAGGA---AGAAGGTGAAGATG---ATAAGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTAT------------TA-AAACGTAAACAAACAAAAC------------------CATAATTTTTATAACGAAAAA---TATAAAC------TA---------A-------------AAAGAAA----ATACAATGTTGTAAAACA------CT---------------CCCACTATT---TACAAA-------TCATAA------ACAC--A---------------ATAA--TTTG-AC--CATCCCTCGA--ACGGCTGCGGATTA----------------------------AAGAAGCCAACGAA---GTAA
droBia1 scf7180000301754:5851606-5851909 - ATTGACGCGTTAATTATTAAATGCAGATA---------------AAGTTGGAGC---------------CGAGGA---AGAAGGTGAAGATG---AAGAGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTT-TTATATAAACTATTATACATACTTAAATTA-AAACGTAAACAAACAAAAC------------------CAACATTTTTATAACGACAAA--ACGTAAAC------AA---------AAAAAC-------------AA----AATCAATGTTGTAAAACA------CT---------------CCCACTCTA---TACAAA-------ACATAA------ACACATA---------------AGAA--TTTT-CC--CATCCCTCGA--ATGGCTGCGGATTA----------------------------AAGCAGCCAACGAA---ATAA
droTak1 scf7180000415805:333215-333523 + ATTGACGCGTTAATTATTAGAAGAAGAGA---------------AAGTTGAAGC---------------GGAGGA---AGAAAGATAAGATG---AAGAGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AAACGTAAACAAACAAAAC------------------CAACATTTTTATAACGACAAA--AAATAATG----------AAAGAAAAAAAAC-------------AA----AAACAATGTTGTAAAACA------CT---------------CCCACTCTA---TACAAA-------CCATAA------ACACATA---------------AGAA--TTTT-CC--CATCCCTCGA--ATGGCTGCGGAT-G----------------------------AAGCAGCCAACGAA---ATAA
droEle1 scf7180000491107:304145-304454 + ATTGACGCGTTAATTATTAGATGAAGATA---------------AAGATAAAGC---------------GGAGGA---AGAAGGTGAAGATG---A--AGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AAACGTAAACAAACGAAAC------------------CAACATTTTTATAACGACAAA--ACGTAAACATA-------AAAC----AAAAC-----------AAAA----AAATAATGTTGTAAA-CACA----CT---------------CCCACTCCA---TACAAA-------ACCTAA------ACACATA---------------AGAA--ACCT-TC--CATCCCTCGA--ATGTCTGCGCATTA----------------------------AGGCAGCCAACGAA---ATAA
droRho1 scf7180000778233:16846-17156 - ATTGACGCGTTAATTATTAGATGAAGATA---------------AAGTTAAAGC---------------GGAGGA---AGAAGGTGAAGATG---AAGAGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AAACGTAAACAAACAAAAC------------------CAACATTTTTATAACGACAAA--ACGTAAACATA-------AAAC----AAAAC-------------AA----AAATAATGTTGTAAAACACA----CT---------------CCCACTCTA---TACAAA-------CCATAA------ACACATA---------------AGAA--ACTT-CC--CATCCCTCGA--ATGGCTGCGGATTA----------------------------AAGCAGCCAACGAA---ATAA
droFic1 scf7180000453858:615639-615941 + ATTGACGCGTTAATTATTAGATGAAGACA---------------CGGTTGAAGC---------------GGATGA---AGGAGGTAAAGATG---AGGAGCA---AAATAAACGAGTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AAACTTAAACAAACA-AAC------------------CAACATTTTTATAACGACAAA--ACATAATC------GT---------A-AAAC-------------AA----AAGCAATGTTGTAAAGCACT----CT---------------CCCACTCTA---TACGAA-------ACATAA------ACACAT-----------------GAA--TTTT-GC--TATTCCTCGA--ATGGCTGCGGACAA----------------------------AAGCAGGCAACGAA---ATAA
droKik1 scf7180000302366:1024424-1024757 - ATTGACGCGTTAATTATTAGGTGAAGCAGAAGCGAAATTGGAAGAGAATAAGGAAGTGAAG----AA--GGCGGA---GGAAGGTGAAGATG---ATGAGCG---AAATAAACGATTATCTT-TAATGTTTCTTTTATATAATTTCTCTGTTATTT-TTATATAAACTATTATACATACTTAAATTA-AAACGTAAACAAACAAAAC------------------CAACATTTTTATAACGAAAAA--ACGTAAACATA----------C----AAAAA-------------AA----AAACAATGTTGTAAAACA------CT---------------CCCACTTTA---TACAAA------ACCATAA------ACACATA---------------AGATACTTTC-CC--CATCCCTCGA--ATGGCTGCAGTTTT--------------------GT------GGGCAGCCAACGAA---AATA
droAna3 scaffold_13266:12171592-12171895 - ATTGACGCGTCAATTAGCAGATGA---GA---------------GAGTAGAAGA---------------TGAAAG---AGACGCGGCGGAAG---AAGAGCG---AAA--------TATATT-TAATGTTTCTTTTATATAATTTCCCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AAACTTAAA--------AC------------------AAAAATTTTTATAACGAAGAA--A-GTAAACATAAACA------------AAACAAAAAC-------AAAAACAAATAATGTTGTAAAACACA----CT-------CCC----TTCCACTTTA---TACGAT-------ACATA-------ACA--CA---------------AGGGA-CCTT-CC--C-TTCCTCGA--TTGGCCGCAGATCC------------------CTGTAGATCTGG-------GCCAA---AACA
droBip1 scf7180000396547:307789-308109 + ATTGACGCGTTGATTACCAGATGAGAGAG---------------GAGATGGA---AATAGA---GACGCGGCGGA---------------AG---AGGAGCG---AAATAAATGATTATATT-TAATGTTTCTTTTATATAATTTCCCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AAACGTAAA--------AC------------------AAAAATTTTTATAACGAGAAA----GTAAACATAAACAA-----------AAAC-------------AAAAACAAATAATGTTGTAAAACACA------CCACT--CCC----TTCCACTTTA---TACAAAAAAAAAAACATAAAAAGAAACACAAA---------------GGGA--CCTT-CC--C-TTCCTCGATATTGGCCGGAGATTC-----------------ATTGTAGATCTGA---GCC-------------
dp5 3:1991595-1991947 - ATTGACGCGTTAATTATTAGGTCAAGATC--------------GAGAATAGGACGGAGA----------AGAGGA---AG-AGATGAAGAAG-AGAAGAGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTAAAAACGTAAACCAACAAAAC------------------CAACAT-TTTATAACGACAAAAAACATAAAC------AATGAAAC----AAAAA-AAAGCAAAAAG-AA----AAATAATGTTGTCAAACA------CTCCAATTTCCCCCAATTTAAATTTA---TATAAA---ACAACCATAA------ACACATA---------------AGAAA-CTTTCCCCGCATCCCTCGA--TTGGCTGCCGATCG----------------------------GAGCAATCATCGAA---ATAA
droPer2 scaffold_2:2164691-2165043 - ATTGACGCGTTAATTATTAGGTCAAGATC--------------GAGAATAGGACGGAGA----------AGAGGA---AG-AGATGAAGAAG-AGAAGAGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTAAAAACGTAAACCAACAAAAC------------------CAACAT-TTTATAACGACAAAAAACATAAAC------AATGAAAC----AAAAA-AAAGAAAAAAC-AA----AAATAATGTTGTCAAACA------CTCCAATTTCCCCCAATTTAAATTTA---TATAAA---ACAACCATAA------ACACATA---------------AGAAA-CTTTCCCCACATCCCTCGA--TTGGCTGCCGATCG----------------------------GAGCAAGCATCGAA---ATAA
droWil2 scf2_1100000004510:1903464-1903784 - ATTGACGCGTTAATTATTAAAA----ATC---------------------AAGA-------------------------GAAAGCAAAACAA---AAAAAAA---AAATAAACGACTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AA-------CAAAAAAAACAAAAAACAACATGAACATCCACATTTTTATAACGATAAA--AAC------------------------------------------A----AAAAAATGTTGTAAAACACATCCACGCAAAATTCCC----ATAAACTTCAGAATAAAAC---AAAAAAATAA------AAACATAATATCCCTAAAAACAAAAA--TATA-CA--TATATATAG----------AATATTAACAAAGAAAACGAAATTATTAT----------------T----------
droVir3 scaffold_12875:17163246-17163428 + ATTGACGCGTTAATTATTAATACAAAAAA---------------AAAAAA---AAAAAAAC--------AAAACAA--GAAAAACCAACAAA---AAAAAGG---AAATAAACGATTATATTTTAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATTCTTAATTAAA-----AACTTAAAAAC-------------------------------------------------------------A---------AC---AACAAACGCAA-------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAA---AT--
droMoj3 scaffold_6496:10838463-10838650 - ATTGACGCGTTAATTATTAATACATAAAA---------------AAAATAATAAAAAAA----------AAAACAACAAAAAAATCAAC------AAAAAGG---AAATAAACGATTATATTTTAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATTCTTAATTAA-----AAACTTAAAGAC-------------------------------------------------------------A---------AC---AACAAACGCAA-------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAAATAATTA
droGri2 scaffold_15245:16692112-16692299 + ATTGACGCGTTAATTATTAATACAAAATA---------------AAAATACAAAAAAAAAAAAA-----TT--AA---AAAAAATCAGCAAA---AAAAGCAAGGAAATAAACGATTATATTATAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACTTAATT----AA-AAACGTAAAAA-------------------------------------------------------------------------C---AACAAACGCAA-------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAAAA-AT--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATTGACGCGTTAATTATTAGATGAAGAAA---------------AAGTTTAATC---------------GCAGGA---AGAAGGTGATGATGATGAAGAGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AAACGTAAACAAA--AAAC------------------CAACATTTTTATAACGACAAA--ACTTAAAC----------------------------------------------AATGTTGTAAA-CACA-------------------------------------------------TGA------ACACTCA---------------AGAA--TTTT-CG--CATCCCTCGA--ATGGCTGCGTGTTT----------------------------AAGTAGTCAACGAA---ATCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................TT-CG--CATCCCTCGA--ATGGCTG........................................................21113.001393100000000000000
................................................................................................................................................................................................................................................................................................................TGTTGTAAA-CACA-------------------------------------------------TGA------ACACT...........................................................................................................2117.00752000000000000000
...................................................................................................................................................................................................................................................................................................................TGTAAA-CACA-------------------------------------------------TGA------ACACTCA---------------AGAA--TT..................................................................................2615.00500000032000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTCGA--ATGGCTGCGTGTTT----------------------------AAGT.................2612.00200000001000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTGCGTGTTT----------------------------AAGTAGTC.............2112.00200000000002000000
................................................TTAATC---------------GCAGGA---AGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................1712.00200000000002000000
..........................................................................................................................................................................................................................................................................................................................CACA-------------------------------------------------TGA------ACACTCA---------------AGAA--TTT.................................................................................2112.00220000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTCGA--ATGGCTGCGTGT...................................................2011.00100000100000000000
.............................................................................................................................ATGTTTCTTTTATATAATTTCTCTGT.................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
.........................................................................................................................................................................TTATACATACTTAAATTA-AAACGTA.....................................................................................................................................................................................................................................................................................................2511.00100000010000000000
...............ATTAGATGAAGAAA---------------AAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000000100000
....................................................................................................................................................................................................................................................................................................................GTAAA-CACA-------------------------------------------------TGA------ACACTCA---------------AGAA--TTTT-...............................................................................2711.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................AA-CACA-------------------------------------------------TGA------ACACTCA---------------AGAA--TTTT-CG--CA.........................................................................2811.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................A--TTTT-CG--CATCCCTCGA--A..............................................................1811.00100000000001000000
................................................................................................................................................................................................................................................GACAAA--ACTTAAAC----------------------------------------------AATGT.....................................................................................................................................................................................1911.00100000100000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCTCGA--ATGGCTGCGTG....................................................2011.00100000000001000000
.....................................................................................................................................................................................................................................ATTTTTATAACGACAAA--ACTTAAA.........................................................................................................................................................................................................................................2411.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTCGA--ATGGCTGCGTGTTT----------------------------AAG..................2511.00100000000001000000
...............................................................................................................................GTTTCTTTTATATAATTTCTC....................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCGA--ATGGCTGCGTGTTT----------------------------AAG..................2111.00100000000000001000
...................................................................................................................................................................................................................................................................................................................TGTAAA-CACA-------------------------------------------------TGA------ACACTC..........................................................................................................1911.00100000100000000000
................................................TTAATC---------------GCAGGA---AGAAGGTGATGA..............................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
......................................................................................................................TATT-TAATGTTTCTTTTAT..............................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TT-CG--CATCCCTCGA--ATGGC..........................................................1911.00110000000000000000
.............................................................................................................................................ATTTCTCTGTTATTTTTTATA......................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................TCA---------------AGAA--TTTT-CG--CATCCCTCGA--AT.............................................................2511.00100010000000000000
................................................................................................................................................................................................................................................................................................................TGTTGTAAA-CACA-------------------------------------------------TGA------ACACC...........................................................................................................2111.00110000000000000000
............................................................................................ATGAAGAGCA---AAATAAACGATT...................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CGA--ATGGCTGCGTGTTT----------------------------AAGT.................2111.00100000100000000000
..........................................................................................................................................................................................................................................................................................................................CACA-------------------------------------------------TGA------ACACTCA---------------AGAA--TTTT-CG--CATC.......................................................................2811.00100000010000000000
...................................................................................................................................................................................................................................................................................................................TGTAAA-CACA-------------------------------------------------TGA------ACACTCA---------------AGAA--T...................................................................................2511.00100000010000000000
................................................................................................................................................TCTCTGTTATTTTTTATATAAACTATTA............................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
................................................TTAATC---------------GCAGGA---AGAAGGTGA.................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
..............................................................................................................................................................................CATACTTAAATTA-AAACGT......................................................................................................................................................................................................................................................................................................1911.00100000100000000000
................................................................................................................................................................................................................................................GACAAA--ACTTAAAC----------------------------------------------AATGTTGT..................................................................................................................................................................................2211.00100010000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TT-CG--CATCCCTCGA--ATGGCTGCGTGT...................................................2611.00100000000001000000
.......................................................................................TGATGATGAAGAGCA---AAATAAACGA.....................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
.....................................................C---------------GCAGGA---AGAAGGTGATGATGATGA........................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000100000
droSec2
ATTGACGCGTTAAATATTAGATGGAGAAA---------------AAGTTTAATC---------------GCAGGA---AGAAGGTGATGATGATGAAGAGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AAACGTAAACAAA-AAAAC------------------CAACATTTTTATAACGACAAA--ACTTAAAC----------------------------------------------AATGTTGTAAA-CACA-------------------------------------------------TGA------ACACTCA---------------AGAA--TTTT-CG--CATCCCTTGA--ATGGCTGCGTGTTT----------------------------AAGTAGTCAACGAA---ATCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................A--ATGGCTGCGTGTTT----------------------------AAGTAG...............2112.0020200
...................................................................................GTGATGATGATGAAGAGCA---AAAT...........................................................................................................................................................................................................................................................................................................................................................................................2312.0020200
...................................................................................GTGATGATGATGAAGAGCA---AA.............................................................................................................................................................................................................................................................................................................................................................................................2112.0020110
..................................................AATC---------------GCAGGA---AGAAGGTGATGATG............................................................................................................................................................................................................................................................................................................................................................................................................2412.0020110
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTTGA--ATGGCTGCGTGTT..................................................2112.0020200
........GTTAAATATTAGATGGAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020011
.....................................................................................GATGATGATGAAGAGCA---AA.............................................................................................................................................................................................................................................................................................................................................................................................1912.0020110
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTGA--ATGGCTGCGTGTTT----------------------------AAG..................2112.0020101
...GACGCGTTAAATATTAGATGGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................TGA--ATGGCTGCGTGTTT----------------------------AAGTA................2211.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCTTGA--ATGGCTGCGTGTT..................................................2211.0010001
..................................................AATC---------------GCAGGA---AGAAGGTGATGATGATGAA.......................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTGA--ATGGCTGCGTGTTT----------------------------AAGT.................2211.0010010
.....................................................C---------------GCAGGA---AGAAGGTGATG...............................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTGCGTGTTT----------------------------AAGTAG...............2011.0010001
...........................................................................................................................................................................ATACATACTTAAATTA-AAACGT......................................................................................................................................................................................................................................................................................................2211.0010010
.....................................................C---------------GCAGGA---AGAAGGTGATGATGAT..........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
.....................................................................................................................................................................................................................................................................................................................................................................................................................TTT-CG--CATCCCTTGA--ATGGCT.........................................................2111.0011000
..................................................AATC---------------GCAGGA---AGAAGGTGATGATGAT..........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
................................................TTAATC---------------GCAGGA---AGAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
........GTTAAATATTAGATGGAGAAA---------------AAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
..........................................................................A---AGAAGGTGATGATGATGAAGAGC...................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
...........................AA---------------AAGTTTAATC---------------GCAGGA---AGAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
..................................................................................GGTGATGATGATGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...............ATTAGATGGAGAAA---------------AAGTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.......................................................................................................................................................................................................................................................................................................................AA-CACA-------------------------------------------------TGA------ACACTCA---------------AGAA--TTTT-CG--C..........................................................................2711.0011000
...............................................................................GAAGGTGATGATGATGAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
............AATATTAGATGGAGAAA---------------AAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.............ATATTAGATGGAGAAA---------------AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
........................................................................................GATGATGAAGAGCA---AAATAAACGATT...................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
.......................................................................AGGA---AGAAGGTGATGATGATGAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
............................................................................................................................................................................................................................................................................................................................CA-------------------------------------------------TGA------ACACTCA---------------AGAA--TTTT-C..............................................................................2111.0011000
......................................................................................ATGATGATGAAGAGCA---AA.............................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.............................................................................................................................................................................................................................................................................................................................A-------------------------------------------------TGA------ACACTCA---------------AGAA--TTTT-CG--...........................................................................2111.0011000
ATTGACGCGTTAAATATTAGATGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
.....................................................C---------------GCAGGA---AGAAGGTGATGATG............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
......................................................................................................................................................................................................................................................................................................................................................................................................................................A--ATGGCTGCGTGTTT----------------------------AAGTAGTC.............2311.0010100
.................................................TAATC---------------GCAGGA---AGAAGGTGA.................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGA--ATGGCTGCGTGTTT----------------------------AAG..................2211.0010001
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCTTGA--ATGGCTGCGTGT...................................................2111.0010100
...............................................................................................................................................................................................................................................................................................................................................................................................................GAA--TTTT-CG--CATCCCTTGA--ATGGC..........................................................2411.0011000
.............ATATTAGATGGAGAAA---------------AAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................ACTCA---------------AGAA--TTTT-CG--CATCCCTTG..................................................................2411.0010010
......................................................................................................................................................................................................................................................................................................................AAA-CACA-------------------------------------------------TGA------ACACTCA---------------AGAA--T...................................................................................2211.0011000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT----------------------------AAGTAGTCAACGAA---ATCA2111.0011000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGA--ATGGCTGCGTGTTT----------------------------AAGT.................2411.0010010
................................................................................AAGGTGATGATGATGAAGAGCA---AAATAA.........................................................................................................................................................................................................................................................................................................................................................................................2811.0010100
..TGACGCGTTAAATATTAGATGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
...........................AA---------------AAGTTTAATC---------------GCAGGA---AGAA......................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.....................................................................................GATGATGATGAAGAGCA---AAA............................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...........................................................................................GATGAAGAGCA---AAATAAACG......................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.........................................................................GA---AGAAGGTGATGATGATG.........................................................................................................................................................................................................................................................................................................................................................................................................1920.5010001
dm3
ATTGACGCGTTAATTATTAGATGAAGAAA---------------AAGTTGAATC---------------GCAGGA---AGAAGGTGATGATG---AAGAGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AAACGTAAACGAA-AAAAC------------------CAACATTTTTATAACGACAAA--ACTTAAAC------AA-----------------------AAAAAAA----AAACAATGTTGTAAA-CACA-------------------------------------------------C--------ACACTCA---------------AGAA--TTTT-CG--CATCCCTCGA--ATGACGGCGTATTT----------------------------AAGTGGTCAACGAA---ATCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................AGATGAAGAAA---------------AAGTTGAATC---------------GC.................................................................................................................................................................................................................................................................................................................................................................................................................................23141.00410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGAAA---------------AAGTTGAATC---------------GCAGGA---..........................................................................................................................................................................................................................................................................................................................................................................................................................21129.0029000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015103000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............ATTAGATGAAGAAA---------------AAGTTGAATC---------------GC.................................................................................................................................................................................................................................................................................................................................................................................................................................26128.002800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000191206000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................AGGA---AGAAGGTGATGATG---AAGAGC...................................................................................................................................................................................................................................................................................................................................................................................................24114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005701000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................ATACATACTTAAATTA-AAACGT......................................................................................................................................................................................................................................................................................................22114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000100000
.....................................................................GCAGGA---AGAAGGTGATGATG---.........................................................................................................................................................................................................................................................................................................................................................................................................20110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................................TTGAATC---------------GCAGGA---AGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................18110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000001000000000000000000000000000010000000000001200000000000000000100000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TT-CG--CATCCCTCGA--ATGACGGCGTG....................................................2519.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000100000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000200000
....................................................................................................................................................................................................................................................................................................................................................................................................................TTTT-CG--CATCCCTCGA--ATGACGGCGTG....................................................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000001000000000000000000000000000000000000000000000000000000000020000000001000000000000000100000
..........................AAA---------------AAGTTGAATC---------------GCAGGA---A.........................................................................................................................................................................................................................................................................................................................................................................................................................2017.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000430000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGAAA---------------AAGTTGAATC---------------GCAGGA---AGA.......................................................................................................................................................................................................................................................................................................................................................................................................................2417.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000213000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...................................................ATC---------------GCAGGA---AGAAGGTGATGATG---AAGA.....................................................................................................................................................................................................................................................................................................................................................................................................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000010000000000000000
.....................................................C---------------GCAGGA---AGAAGGTGATGATG---AAGAGC...................................................................................................................................................................................................................................................................................................................................................................................................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000
............................................................................................................................................................................................................................................................................................................................................................................................TCA---------------AGAA--TTTT-CG--CATCCCTCGA--AT.............................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000101200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................AGGTGATGATG---AAGAGCA---AAA............................................................................................................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................GATGATG---AAGAGCA---AAATAAACGAT....................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................TC---------------GCAGGA---AGAAGGTGATGATG---AAGAGC...................................................................................................................................................................................................................................................................................................................................................................................................2815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000300000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GAAA---------------AAGTTGAATC---------------GCAGGA---AG........................................................................................................................................................................................................................................................................................................................................................................................................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................GGTGATGATG---AAGAGCA---AAAT...........................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...........................AA---------------AAGTTGAATC---------------GCAGGA---AGA.......................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AAA---------------AAGTTGAATC---------------GCAGGA---AG........................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droEre2
ATTGACGCGTTAATTATTAGATGAAGAAA---------------AAGTTGAAGC---------------GCAGGC---AGAAGGCGATGATG---GAGAGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AAACGTAAACAAAGAAAAC------------------CAACATTTTTATAACGACAAA--ACTTAAAC------AA-----------------------GA---------AGAAAATGTTGTAAAACACA---------------------------------------------------A------ACACTCA---------------AGAA--TTTT-CG--CATCCCTCGA--ATGGCTGCGTCTTT----------------------------AAGCAGCCAACGAA---ATCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCTCGA--ATGGCTGCGTCT...................................................2114.0041000300
..........................................................................................................................................................................TATACATACTTAAATTA-AAACGT......................................................................................................................................................................................................................................................................................................2312.0020000200
.............................................................................................................................................................................................................................................................................................................................................................................................................................CATCCCTCGA--ATGGCTGCGTCT...................................................2212.0021000100
......................................................................................................................................................................................................................................................................................................................................................................................................................TT-CG--CATCCCTCGA--ATGGCT.........................................................2012.0021000100
.................................................GAAGC---------------GCAGGC---AGAAGGCGATGATG---.........................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000200
...GACGCGTTAATTATTAGATGAAGAAA---------------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000110
.....................................................................................GATGATG---GAGAGCA---AAATAAAC.......................................................................................................................................................................................................................................................................................................................................................................................2212.0020000200
.......................................................................AGGC---AGAAGGCGATGATG---GAGAGC...................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
ATTGACGCGTTAATTATTAGATGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTT----------------------------AAGCAGCCAACGAA---A...2111.0011000000
....................................................................................................................................................................................................ACAAAGAAAAC------------------CAACATT................................................................................................................................................................................................................................................................1811.0011000000
...........................................................................................................ATAAACGATTATATT-TAATGT.......................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................A--TTTT-CG--CATCCCTCGA--ATGG...........................................................2111.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TTT-CG--CATCCCTCGA--ATGGC..........................................................2011.0010001000
............................................................................................................................................................................................................AAC------------------CAACATTTTTATAACGACAAA--ACT.............................................................................................................................................................................................................................................2711.0011000000
........................................................................GGC---AGAAGGCGATGATG---GAGA.....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTCTTT----------------------------AAGCAGCCAACG.........2111.0010000010
........................................................................................GATG---GAGAGCA---AAATAAA........................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................GAA--TTTT-CG--CATCCCTCGA--ATGGCC.........................................................2511.0010100000
...................................................AGC---------------GCAGGC---AGAAGGCGATGATG---GA.......................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.........................................................................GC---AGAAGGCGATGATG---GAGA.....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................CA---------------AGAA--TTTT-CG--CATCCCTCG..................................................................2111.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTCGA--ATGGCTGCGTCTTT----------------------------AAGC.................2611.0011000000
..................................................................................GGCGATGATG---GAGAGCA---AAATA..........................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................A--TTTT-CG--CATCCCTCGA--ATGGCTG........................................................2411.0011000000
....................................................................................................................................................................................................................................CATTTTTATAACGACAAA--ACTTAAAC------AA-----------------------.........................................................................................................................................................................................................2811.0011000000
...............................................................................GAAGGCGATGATG---GAGAGCA---A..............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.....................................................C---------------GCAGGC---AGAAGGCGATGATG---GAG......................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................CATCCCTCGA--ATGGCTGCGTC....................................................2111.0011000000
.....................................................C---------------GCAGGC---AGAAGGCGATGATG---G........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
..........................................................................................................................................................................................................................................................TTAAAC------AA-----------------------GA---------AGAAAATGTTG...................................................................................................................................................................................2111.0010000010
...............................................................................................................................................................................................................................................................C------AA-----------------------GA---------AGAAAATGTTGTAAAA..............................................................................................................................................................................2111.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TT-CG--CATCCCTCGA--ATGGCTG........................................................2111.0011000000
.....................................................................................GATGATG---GAGAGCA---AAATAAA........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
...GACGCGTTAATTATTAGATGAAGAAA---------------AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTCGA--ATGGCTGCGTCTT..................................................2111.0011000000
.................................................................................AGGCGATGATG---GAGAGCA---A..............................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................GAA--TTTT-CG--CATCCCTCGA--A..............................................................2011.0011000000
......................................................................................................................................................................................................................................................................................................................AAAACACA---------------------------------------------------A------ACACTCA---------------AGA.......................................................................................1911.0010100000
...................................................................................GCGATGATG---GAGAGCA---AAATAAACGATT...................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
.................................................................................................................................................................ATAAACTATTATACATACTT...................................................................................................................................................................................................................................................................................................................2011.0011000000
...............................................................................................................................................................................................................................................CGACAAA--ACTTAAAC------AA-----------------------GA---------AGAAAATG......................................................................................................................................................................................2711.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................G--CATCCCTCGA--ATGGCTGCGT.....................................................2111.0011000000
........................................................................................GATG---GAGAGCA---AAATAAAC.......................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
...............................................................................................................................................................................................................................................................................................................................................................................................................GAA--TTTT-CG--CATCCCTCGA--ATGGC..........................................................2411.0010100000
..............................................GTTGAAGC---------------GCAGGC---AGAAGGCGATG...............................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
...................................................................................................................................................................................................................................................................................................................TGTAAAACACA---------------------------------------------------A------ACACTCA---------------AGAA--TT..................................................................................2511.0010100000
.............................................AGTTGAAGC---------------GCAGGC---AGAAGGCG..................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
.....................................................................................GATGATG---GAGAGCA---AAATA..........................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
............................................................................................................................................................................................................................................................................................................................................................................................TCA---------------AGAA--TTTT-CG--CATCCCTC...................................................................2111.0011000000
...GACGCGTTAATTATTAGATGAAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTT----------------------------AAGCAGCCAACGAA---AT..2111.0011000000
.................TAGATGAAGAAA---------------AAGTTGAAGC---------------GCAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
........GTTAATTATTAGATGAAGAAA---------------AAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
............ATTATTAGATGAAGAAA---------------AAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
..............................................................................AGAAGGCGATGATG---GAGAGCA---AAAT...........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
droYak3
ATTGACGCGTTAATTATTAGAGGAAGAAA---------------AAGTTGAAGC---------------GCAGGA---AGAAGGTGATGATG---AAGAGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AAACGTAAACAAAGAAAAC------------------CAACATTTTTATAACGACAAC--ACTTAAAC------AA-----------------------AA---------AGAAAATGTTGTAAAACACA---------------------------------------------------A------ACACTCA---------------AGAA--TTTT-CG--CATCCCTCGA--ATGGCCGCGTGTTT----------------------------AAGCAGTCAACGAA---ATAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................GATGATG---AAGAGCA---AAATAAACGATT...................................................................................................................................................................................................................................................................................................................................................................................2613.00300000030000
........................................................................................GATG---AAGAGCA---AAATAAACGATT...................................................................................................................................................................................................................................................................................................................................................................................2313.00301000020000
..............................................GTTGAAGC---------------GCAGGA---AGAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................2113.00301000020000
...............................................................................GAAGGTGATGATG---AAGAGCA---AAATA..........................................................................................................................................................................................................................................................................................................................................................................................2512.00200000020000
...GACGCGTTAATTATTAGAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00201000010000
.....................................................................................GATGATG---AAGAGCA---AAATAAACGATTAT.................................................................................................................................................................................................................................................................................................................................................................................2812.00200000020000
............................................................................................................................................................................................................................................................................................................................................................................................TCA---------------AGAA--TTTT-CG--CATCCCTC...................................................................2111.00101000000000
........................AGAAA---------------AAGTTGAAGC---------------GCAGGA---..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...............................................................................................................................................................................................................................................................................................................ATGTTGTAAAACACA---------------------------------------------------A------ACACTCA---------------AGA.......................................................................................2611.00101000000000
...................................................................................................................................................................................................................................................................................................................TGTAAAACACA---------------------------------------------------A------ACACTCA---------------AGA.......................................................................................2211.00101000000000
................................................................................AAGGTGATGATG---AAGAGCA---AAAT...........................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
..........................................................................................................................................................................TATACATACTTAAATTA-AAACGT......................................................................................................................................................................................................................................................................................................2311.00100000010000
........GTTAATTATTAGAGGAAGAAA---------------AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................A--ATGGCCGCGTGTTT----------------------------AAGC.................1911.00101000000000
.............................................AGTTGAAGC---------------GCAGGA---AGAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
......................................................................................ATGATG---AAGAGCA---AAATAAAC.......................................................................................................................................................................................................................................................................................................................................................................................2111.00100000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................T-CG--CATCCCTCGA--ATGGCCGC.......................................................2111.00101000000000
...........................AA---------------AAGTTGAAGC---------------GCAGGA---AGAAGGTGAT................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
.....................................................................................GATGATG---AAGAGCA---AAATAAAC.......................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
........................................................................................GATG---AAGAGCA---AAATAAAC.......................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..............................................GTTGAAGC---------------GCAGGA---AGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTT----------------------------AAGCAGTCAACGAA---ATA.2111.00100000010000
..........................AAA---------------AAGTTGAAGC---------------GCAGGA---A.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................CACTCA---------------AGAA--TTTT-CG--CATCC......................................................................2111.00100000100000
......................................................................CAGGA---AGAAGGTGATGATG---AAGAGC...................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGA--ATGGCCGCGTGTTT----------------------------AAGCA................2511.00100000010000
................................................TGAAGC---------------GCAGGA---AGAAGGTGAT................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.......................................................................AGGA---AGAAGGTGATGATG---AAGAGC...................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
...............................................................................................................ACGATTATATT-TAATGTTTCT...................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
ATTGACGCGTTAATTATTAGAGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
................................................TGAAGC---------------GCAGGA---AGAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..................................................................................................................................................................................................................................................CAAC--ACTTAAAC------AA-----------------------AA---------AGAAAATGT.....................................................................................................................................................................................2511.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................A--TTTT-CG--CATCCCTCGA--ATGGCCGCGT.....................................................2711.00101000000000
...............................................TTGAAGC---------------GCAGGA---AGAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..................................................AAGC---------------GCAGGA---AGAAGGTGAT................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...................................................AGC---------------GCAGGA---AGAAGGTGAT................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
........GTTAATTATTAGAGGAAGAAA---------------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
......................................................................................ATGATG---AAGAGCA---AAATAAACGATT...................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.................................................GAAGC---------------GCAGGA---AGAAGGTGAT................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
........................AGAAA---------------AAGTTGAAGC---------------GCAGGA---AGAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCTCGA--ATGGCCGCGTGTTT----------------------------.....................2311.00101000000000
................................................................................AAGGTGATGATG---AAGAGCA---AA.............................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTGTTT----------------------------AAGCAGTCAACGAA---....2311.00100000010000
.......................................................................AGGA---AGAAGGTGATGATG---A........................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.....................................................................................GATGATG---AAGAGCA---AAATA..........................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCTCGA--ATGGCCGCGTGT...................................................2111.00100000010000
............................................AAGTTGAAGC---------------GCAGGA---AGAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.................................................GAAGC---------------GCAGGA---AGAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
...............................................................................GAAGGTGATGATG---AAGAGC...................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TT-CG--CATCCCTCGA--ATGGCCGCGTG....................................................2511.00101000000000
................................................................................................................................................................................................GTAAACAAAGAAAAC------------------CAACATTT...............................................................................................................................................................................................................................................................2311.00101000000000
.................................................................................AGGTGATGATG---AAGAGCA---AAATA..........................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.....................................................................................GATGATG---AAGAGCA---AAATAA.........................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
...............................................................................GAAGGTGATGATG---AAGAGCA---AAAT...........................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
..............................................................................AGAAGGTGATGATG---AAGAGCA---AAAT...........................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
............................A---------------AAGTTGAAGC---------------GCAGGA---AGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................AGAA--TTTT-CG--CATCCCTCGA--ATGGCC.........................................................2611.00101000000000
....................................................GC---------------GCAGGA---AGAAGGTGATGATG---AAGA.....................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
..........................AAA---------------AAGTTGAAGC---------------GCAGGA---AGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.....................................................................GCAGGA---AGAAGGTGATGATG---AAGA.....................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGTTT----------------------------AAGCAGTCAACGA........2111.00100000010000
............................................................................................................................................................................................AAACGTAAACAAAGAAAAC------------------CAACATTT...............................................................................................................................................................................................................................................................2711.00101000000000
...........................................................................................G---AAGAGCA---AAATAAACGATT...................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TT-CG--CATCCCTCGA--ATGGCC.........................................................2011.00101000000000
........................................................................................GATG---AAGAGCA---AAATAAACGATTAT.................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
...........................AA---------------AAGTTGAAGC---------------GCAGGA---AGAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.....................................................................................GATGATG---AAGAGCA---AAATAAACGATTATA................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
..............................................GTTGAAGC---------------GCAGGA---AGAA......................................................................................................................................................................................................................................................................................................................................................................................................................1830.33101000000000
droEug1
ATTGACGAGTTAATTATTAAATGAACATA---------------AAGTTGAAGC---------------GGAGGA---AGAAGGTGAAGATG---ATAAGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTAT------------TA-AAACGTAAACAAACAAAAC------------------CATAATTTTTATAACGAAAAA---TATAAAC------TA---------A-------------AAAGAAA----ATACAATGTTGTAAAACA------CT---------------CCCACTATT---TACAAA-------TCATAA------ACAC--A---------------ATAA--TTTG-AC--CATCCCTCGA--ACGGCTGCGGATTA----------------------------AAGAAGCCAACGAA---GTAASizeHit CountTotal NormTotal
No Reads
droBia1
ATTGACGCGTTAATTATTAAATGCAGATA---------------AAGTTGGAGC---------------CGAGGA---AGAAGGTGAAGATG---AAGAGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTT-TTATATAAACTATTATACATACTTAAATTA-AAACGTAAACAAACAAAAC------------------CAACATTTTTATAACGACAAA--ACGTAAAC------AA---------AAAAAC-------------AA----AATCAATGTTGTAAAACA------CT---------------CCCACTCTA---TACAAA-------ACATAA------ACACATA---------------AGAA--TTTT-CC--CATCCCTCGA--ATGGCTGCGGATTA----------------------------AAGCAGCCAACGAA---ATAASizeHit CountTotal NormTotal
No Reads
droTak1
ATTGACGCGTTAATTATTAGAAGAAGAGA---------------AAGTTGAAGC---------------GGAGGA---AGAAAGATAAGATG---AAGAGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AAACGTAAACAAACAAAAC------------------CAACATTTTTATAACGACAAA--AAATAATG----------AAAGAAAAAAAAC-------------AA----AAACAATGTTGTAAAACA------CT---------------CCCACTCTA---TACAAA-------CCATAA------ACACATA---------------AGAA--TTTT-CC--CATCCCTCGA--ATGGCTGCGGAT-G----------------------------AAGCAGCCAACGAA---ATAASizeHit CountTotal NormTotal
No Reads
droEle1
ATTGACGCGTTAATTATTAGATGAAGATA---------------AAGATAAAGC---------------GGAGGA---AGAAGGTGAAGATG---A--AGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AAACGTAAACAAACGAAAC------------------CAACATTTTTATAACGACAAA--ACGTAAACATA-------AAAC----AAAAC-----------AAAA----AAATAATGTTGTAAA-CACA----CT---------------CCCACTCCA---TACAAA-------ACCTAA------ACACATA---------------AGAA--ACCT-TC--CATCCCTCGA--ATGTCTGCGCATTA----------------------------AGGCAGCCAACGAA---ATAASizeHit CountTotal NormTotal
No Reads
droRho1
ATTGACGCGTTAATTATTAGATGAAGATA---------------AAGTTAAAGC---------------GGAGGA---AGAAGGTGAAGATG---AAGAGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AAACGTAAACAAACAAAAC------------------CAACATTTTTATAACGACAAA--ACGTAAACATA-------AAAC----AAAAC-------------AA----AAATAATGTTGTAAAACACA----CT---------------CCCACTCTA---TACAAA-------CCATAA------ACACATA---------------AGAA--ACTT-CC--CATCCCTCGA--ATGGCTGCGGATTA----------------------------AAGCAGCCAACGAA---ATAASizeHit CountTotal NormTotal
No Reads
droFic1
ATTGACGCGTTAATTATTAGATGAAGACA---------------CGGTTGAAGC---------------GGATGA---AGGAGGTAAAGATG---AGGAGCA---AAATAAACGAGTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AAACTTAAACAAACA-AAC------------------CAACATTTTTATAACGACAAA--ACATAATC------GT---------A-AAAC-------------AA----AAGCAATGTTGTAAAGCACT----CT---------------CCCACTCTA---TACGAA-------ACATAA------ACACAT-----------------GAA--TTTT-GC--TATTCCTCGA--ATGGCTGCGGACAA----------------------------AAGCAGGCAACGAA---ATAASizeHit CountTotal NormTotal
No Reads
droKik1
ATTGACGCGTTAATTATTAGGTGAAGCAGAAGCGAAATTGGAAGAGAATAAGGAAGTGAAG----AA--GGCGGA---GGAAGGTGAAGATG---ATGAGCG---AAATAAACGATTATCTT-TAATGTTTCTTTTATATAATTTCTCTGTTATTT-TTATATAAACTATTATACATACTTAAATTA-AAACGTAAACAAACAAAAC------------------CAACATTTTTATAACGAAAAA--ACGTAAACATA----------C----AAAAA-------------AA----AAACAATGTTGTAAAACA------CT---------------CCCACTTTA---TACAAA------ACCATAA------ACACATA---------------AGATACTTTC-CC--CATCCCTCGA--ATGGCTGCAGTTTT--------------------GT------GGGCAGCCAACGAA---AATASizeHit CountTotal NormTotal
No Reads
droAna3
ATTGACGCGTCAATTAGCAGATGA---GA---------------GAGTAGAAGA---------------TGAAAG---AGACGCGGCGGAAG---AAGAGCG---AAA--------TATATT-TAATGTTTCTTTTATATAATTTCCCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AAACTTAAA--------AC------------------AAAAATTTTTATAACGAAGAA--A-GTAAACATAAACA------------AAACAAAAAC-------AAAAACAAATAATGTTGTAAAACACA----CT-------CCC----TTCCACTTTA---TACGAT-------ACATA-------ACA--CA---------------AGGGA-CCTT-CC--C-TTCCTCGA--TTGGCCGCAGATCC------------------CTGTAGATCTGG-------GCCAA---AACASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................CTT-CC--C-TTCCTCGA--TTGGCCG........................................................2113.003300000
...............................................................................GACGCGGCGGAAG---AAGAGC...................................................................................................................................................................................................................................................................................................................................................................................................1913.003020001
..........CAATTAGCAGATGA---GA---------------GAGTAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002000020
....................................................GA---------------TGAAAG---AGACGCGGCGGAAG---AAG......................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.....................................................A---------------TGAAAG---AGACGCGGCGGAAG---AAGAGCG---...............................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
....................................................GA---------------TGAAAG---AGACGCGGCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...................GATGA---GA---------------GAGTAGAAGA---------------TGAAAG---AGA.......................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
..TGACGCGTCAATTAGCAGATGA---GA---------------GA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCGA--TTGGCCGCAGATCC------------------CTGTAGATC......................2711.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCC------------------CTGTAGATCTGG-------GCC.........2011.001100000
...........................................................................................................................................................................................................................................ATAACGAAGAA--A-GTAAACAT......................................................................................................................................................................................................................................2011.001000010
......................................................................................................................TATT-TAATGTTTCTTTTATATAATTTCC.....................................................................................................................................................................................................................................................................................................................................................2811.001010000
.......................A---GA---------------GAGTAGAAGA---------------TGAAAG---AGAC......................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.................................................................................CGCGGCGGAAG---AAGAGCG---AA.............................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
....................................................GA---------------TGAAAG---AGACGCGGCGGAAG---AAGA.....................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.....................................................................................................................................................................................................................................................................................................................TAAAACACA----CT-------CCC----TTCCACT...............................................................................................................................................2111.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CC--C-TTCCTCGA--TTGGCCGCAGT....................................................2211.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................GA-CCTT-CC--C-TTCCTCGA--TTGGCCGCAG.....................................................2711.001100000
........................................................................................................................................ATATAATTTCCCTGTTATTTTT..........................................................................................................................................................................................................................................................................................................................................2211.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTCGA--TTGGCCGCAG.....................................................1811.001010000
ATTGACGCGTCAATTAGCAGATGA---.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
........................................................................AAG---AGACGCGGCGGAAG---AAGA.....................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..........CAATTAGCAGATGA---GA---------------GA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
.......................................................................................................................................................................................................................................................................................................................AAACACA----CT-------CCC----TTCCACTTT.............................................................................................................................................2111.001100000
..........CAATTAGCAGATGA---GA---------------GAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
...............................................................................GACGCGGCGGAAG---AAGAG....................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
...........................................................................................................................................................................................................................................ATAACGAAGAA--A-GTAAAC........................................................................................................................................................................................................................................1811.001010000
...............AGCAGATGA---GA---------------GAGTAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
...GACGCGTCAATTAGCAGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...GACGCGTCAATTAGCAGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...........................................................................................................A--------TATATT-TAATGTTTCTTTT................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...............................................................................................AAGAGCG---AAA--------TATATT-TAAT.........................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...GACGCGTCAATTAGCAGATGA---GA---------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
......................................................................GAAAG---AGACGCGGCGGAAG---AAGAGCG---A..............................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................................GA-CCTT-CC--C-TTCCTCGA--TTGG...........................................................2111.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................A-CCTT-CC--C-TTCCTCGA--TTGGC..........................................................2111.001100000
.............................................................................................................................................................................................................................................AACGAAGAA--A-GTAAACATAAACA------------AAAC.................................................................................................................................................................................................................2711.001010000
.....................................................................................................................................................................................................................................ATTTTTATAACGAAGAA--A-GT............................................................................................................................................................................................................................................2011.001010000
...................................................................................CGGCGGAAG---AAGAGCG---AAA--------T...................................................................................................................................................................................................................................................................................................................................................................................2011.001000100
...................................................................................................................................................................................................................................................GAA--A-GTAAACATAAACA------------AAAAC................................................................................................................................................................................................................2250.201010000
.....................................................A---------------TGAAAG---AGACGCGGGT................................................................................................................................................................................................................................................................................................................................................................................................................17110.091000100
droBip1
ATTGACGCGTTGATTACCAGATGAGAGAG---------------GAGATGGA---AATAGA---GACGCGGCGGA---------------AG---AGGAGCG---AAATAAATGATTATATT-TAATGTTTCTTTTATATAATTTCCCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AAACGTAAA--------AC------------------AAAAATTTTTATAACGAGAAA----GTAAACATAAACAA-----------AAAC-------------AAAAACAAATAATGTTGTAAAACACA------CCACT--CCC----TTCCACTTTA---TACAAAAAAAAAAACATAAAAAGAAACACAAA---------------GGGA--CCTT-CC--C-TTCCTCGATATTGGCCGGAGATTC-----------------ATTGTAGATCTGA---GCC-------------SizeHit CountTotal NormTotal
No Reads
dp5
ATTGACGCGTTAATTATTAGGTCAAGATC--------------GAGAATAGGACGGAGA----------AGAGGA---AG-AGATGAAGAAG-AGAAGAGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTAAAAACGTAAACCAACAAAAC------------------CAACAT-TTTATAACGACAAAAAACATAAAC------AATGAAAC----AAAAA-AAAGCAAAAAG-AA----AAATAATGTTGTCAAACA------CTCCAATTTCCCCCAATTTAAATTTA---TATAAA---ACAACCATAA------ACACATA---------------AGAAA-CTTTCCCCGCATCCCTCGA--TTGGCTGCCGATCG----------------------------GAGCAATCATCGAA---ATAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................CAAGATC--------------GAGAATAGGACGGAGA----------...................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000002
..........................ATC--------------GAGAATAGGACGGAGA----------...................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020200000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCCGCATCCCTCGA--TTGGCTG........................................................2412.0020200000000
........................AGATC--------------GAGAATAGGACGGAGA----------AC.................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000002
...........................................GAGAATAGGACGGAGA----------AGA................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020200000000
...........................................................................................................................................................................ATACATACTTAAATTAAAAACGTA.....................................................................................................................................................................................................................................................................................................2412.0020110000000
..................AGGTCAAGATC--------------GAGAATAGGACGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000001
..................................................GGACGGAGA----------AGAGGA---AG-AGATGA.................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGA--TTGGCTGCCGATCG----------------------------GA...................2211.0010000100000
.................................................................................................................................................................................................................................................................................................................GTTGTCAAACA------CTCCAATTTCCCCCAATT....................................................................................................................................................2911.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGATCG----------------------------GAGCAATCATCGA........2211.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGATCG----------------------------GAGCAATCATCG.........2011.0010100000000
....................................................................................................................................................................................................................................................................................................................GTCAAACA------CTCCAATTTCCC..........................................................................................................................................................2011.0010010000000
.................................................................................................................................................................................................................................................................................................................GTTGTCAAACA------CTCCAATTT.............................................................................................................................................................2011.0010100000000
...............................................ATAGGACGGAGA----------AGAGGA---..........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTGCCGATCG----------------------------GAGCAATCATCG.........2511.0010100000000
.........................GATC--------------GAGAATAGGACGGAGA----------...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GA--TTGGCTGCCGATCG----------------------------GAG..................1911.0010100000000
.........................................................GA----------AGAGGA---AG-AGATGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
...................................................................................................................................................................................................................................................................................................................TGTCAAACA------CTCCAATTTCCCCC........................................................................................................................................................2311.0010100000000
...........................................................................................................................................................................................AAAACGTAAACCAACAAAAC------------------CAAC...................................................................................................................................................................................................................................................................2411.0010100000000
..........................................................A----------AGAGGA---AG-AGATGAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTCGA--TTGGCTGCCGATCG----------------------------.....................2211.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GA--TTGGCTGCCGATCG----------------------------GAGC.................2011.0010000100000
.....................................................................AGAGGA---AG-AGATGAAGAAG-AGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCTCGA--TTGGCTGCCGT....................................................2011.0010100000000
...........................................................................................................................................................................................................................................................................AAC----AAAAA-AAAGCAAAAAG-AA----AA............................................................................................................................................................................................2311.0010100000000
..........................................................A----------AGAGGA---AG-AGATGAAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000001000
......................................................................GAGGA---AG-AGATGAAGAAG-...........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
........................................................................................................................................ATATAATTTCTCTGTTATTTTTTATAT.....................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.................................................AGGACGGAGA----------AGAGGA---AG-AGAT...................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CGA--TTGGCTGCCGATCG----------------------------GAG..................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCTCGA--TTGGCTGCCGATCG----------------------------GAGC.................2711.0010100000000
.............................................GAATAGGACGGAGA----------AGAGGA---..........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GCATCCCTCGA--TTGGCTGCCGATC..................................................2411.0010100000000
.............................................................................................................................................ATTTCTCTGTTATTTTTTATATA....................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...................GGTCAAGATC--------------GAGAATAGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
......................................................................GAGGA---AG-AGATGAAGAAG-AGAAGAGC...................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TCCCCGCATCCCTCGA--TTGGCTGCCG.....................................................2611.0010100000000
.......................................................................................................................................................................................................................................................................................................................AAACA------CTCCAATTTCCCCCA.......................................................................................................................................................2011.0010100000000
............................................................................................................................................................................................................................................................................................................ATAATGTTGTCAAACA------CTCCAATTTCCCC.........................................................................................................................................................2911.0010100000000
......................CAAGATC--------------GAGAATAGGACGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000001
...............................................................................................................................................................................................................................................................................................................................................................................................................GAAA-CTTTCCCCGCATCCCTCGA--G..............................................................2411.0010100000000
..........................................................A----------AGAGGA---AG-AGATGAAGAAG-A..........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................ATAATGTTGTCAAACA------CTCC..................................................................................................................................................................2011.0010100000000
.....................................................................................GAAGAAG-AGAAGAGCA---AAA............................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
.............................................GAATAGGACGGAGA----------AGAGGA---AG-A......................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
..........................................................................A---AG-AGATGAAGAAG-AGAAGAGCA---A..............................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000001
....................................................ACGGAGA----------AGAGGA---AG-AGATG..................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................TTGTCAAACA------CTCCAATTTCCCC.........................................................................................................................................................2311.0010100000000
..............TATTAGGTCAAGATC--------------GAGAATAGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000001
......................CAAGATC--------------GAGAATAGGACGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000001
........................................................................................................................................................................................................................................................................................................................................................................................................................CCCCGCATCCCTCGA--TTGGCT.........................................................2111.0010100000000
......................CAAGATC--------------GAGAATAGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010000000
...........................................................................................................................................................................................................................................ATAACGACAAAAAACATAAAC------AATGAAAC----......................................................................................................................................................................................................................2911.0010100000000
............................................AGAATAGGACGGAGA----------AGAGGA---AG-.......................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000001
..............................................................................AG-AGATGAAGAAG-AGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.....................................................................................................................................................................................................................................................................................AA-AAAGCAAAAAG-AA----AAATAATGTTGTC.................................................................................................................................................................................2811.0010010000000
..............................................................................................GAAGAGCA---AAATAAACGATT...................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.................TAGGTCAAGATC--------------GAGAATAGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
.................................................................................................................................................................................................................................................................................................................GTTGTCAAACA------CTCCAATTTCCCCC........................................................................................................................................................2511.0010100000000
...............................................................................................................................................................................................................................................................................................................ATGTTGTCAAACA------CTCCAATTTCCC..........................................................................................................................................................2511.0010010000000
...............................................................................................AAGAGCA---AAATAAACGATT...................................................................................................................................................................................................................................................................................................................................................................................1920.5010100000000
...................................................................................................................................................................................................................................................................................AAAA-AAAGCAAAAAG-AA----ATC...........................................................................................................................................................................................20200.0510010000000
droPer2
ATTGACGCGTTAATTATTAGGTCAAGATC--------------GAGAATAGGACGGAGA----------AGAGGA---AG-AGATGAAGAAG-AGAAGAGCA---AAATAAACGATTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTAAAAACGTAAACCAACAAAAC------------------CAACAT-TTTATAACGACAAAAAACATAAAC------AATGAAAC----AAAAA-AAAGAAAAAAC-AA----AAATAATGTTGTCAAACA------CTCCAATTTCCCCCAATTTAAATTTA---TATAAA---ACAACCATAA------ACACATA---------------AGAAA-CTTTCCCCACATCCCTCGA--TTGGCTGCCGATCG----------------------------GAGCAAGCATCGAA---ATAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................CAAGATC--------------GAGAATAGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................1816.006600000
...................GGTCAAGATC--------------GAGAATAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.004400000
......................CAAGATC--------------GAGAATAGGACGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
...............................................ATAGGACGGAGA----------AGAGGA---AG-A......................................................................................................................................................................................................................................................................................................................................................................................................................2112.002100001
.........................GATC--------------GAGAATAGGACGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
..................................................................................GATGAAGAAG-AGAAGAGCA---AA.............................................................................................................................................................................................................................................................................................................................................................................................2112.002010001
....................GTCAAGATC--------------GAGAATAGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
.....................................................................AGAGGA---AG-AGATGAAGAAG-AGAA.......................................................................................................................................................................................................................................................................................................................................................................................................2312.002200000
...GACGCGTTAATTATTAGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
..................................................................................GATGAAGAAG-AGAAGAGCA---A..............................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.........................................................................................................................................................................................TAAAAACGTAAACCAACAAAAC------------------CAACAT-T...............................................................................................................................................................................................................................................................2911.001010000
..........................................................................................AG-AGAAGAGCA---AAATAAACGAT....................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..........................ATC--------------GAGAATAGGACGGAGA----------...................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.........................................................GA----------AGAGGA---AG-AGATGAAGAAG-AGA........................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
....................GTCAAGATC--------------GAGAATAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
............................C--------------GAGAATAGGACGGAGA----------AGAGGA---A.........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
................................................TAGGACGGAGA----------AGAGGA---AG-AGA....................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
...........................TC--------------GAGAATAGGACGGAGA----------AGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
............................C--------------GAGAATAGGACGGAGA----------AGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
...........................................GAGAATAGGACGGAGA----------AG.................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
.............................................................................................................................................ATTTCTCTGTTATTTTTTATATA....................................................................................................................................................................................................................................................................................................................................2311.001001000
..................................................GGACGGAGA----------AGAGGA---AG-AGAT...................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..............TATTAGGTCAAGATC--------------GAGAATAGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...................................................................................................................................................CTGTTATTTTTTATATAA...................................................................................................................................................................................................................................................................................................................................1811.001100000
................TTAGGTCAAGATC--------------GAGAATAGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..........................................................................................................................................................................................AAAAACGTAAACCAACAAAAC------------------CAAC...................................................................................................................................................................................................................................................................2511.001010000
.....................................................................AGAGGA---AG-AGATGAAGAAG-AGAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................CACATA---------------AGAAA-CTTTCCCCACATCCC.....................................................................2611.001010000
................................................TAGGACGGAGA----------AGAGGA---AG-AGATG..................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..............................................AATAGGACGGAGA----------AGAGGA---..........................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.........................................................GA----------AGAGGA---AG-AGATGAAGAAG-A..........................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
...................................................GACGGAGA----------AGAGGA---AG-AG.....................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
...................................................................................................................................................................................................................................................................................................................TGTCAAACA------CTCCAATTTCCCCCAAT.....................................................................................................................................................2611.001100000
............................................................................................................................................AATTTCTCTGTTATTTTTT.........................................................................................................................................................................................................................................................................................................................................1911.001001000
.............................................................................................................................................................................................................................................................................................................................................................................................TA---------------AGAAA-CTTTCCCCACATCCCTCGA--...............................................................2611.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................AA-CTTTCCCCACATCCCTCGA--TTGGCTGC.......................................................2911.001010000
.............................................GAATAGGACGGAGA----------AGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
droWil2
ATTGACGCGTTAATTATTAAAA----ATC---------------------AAGA-------------------------GAAAGCAAAACAA---AAAAAAA---AAATAAACGACTATATT-TAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACATACTTAAATTA-AA-------CAAAAAAAACAAAAAACAACATGAACATCCACATTTTTATAACGATAAA--AAC------------------------------------------A----AAAAAATGTTGTAAAACACATCCACGCAAAATTCCC----ATAAACTTCAGAATAAAAC---AAAAAAATAA------AAACATAATATCCCTAAAAACAAAAA--TATA-CA--TATATATAG----------AATATTAACAAAGAAAACGAAATTATTAT----------------T----------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................................TCCACGCAAAATTCCC----ATAAACTTCAGAA.........................................................................................................................................2911.00101000
........................................................................................................................................................................................................................................TTTATAACGATAAA--AAC------------------------------------------A----AAAAAATGTT....................................................................................................................................................................................2811.00101000
..................AAAA----ATC---------------------AAGA-------------------------GAAAGCAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
.....................A----ATC---------------------AAGA-------------------------GAAAGCAAAACA.............................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
......GCGTTAATTATTAAAA----ATC---------------------AAGA-------------------------GA.......................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTAACAAAGAAAACGAAATTATT.............................2711.00100001
..................................................AAGA-------------------------GAAAGCAAAACAA---AAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
..TGACGCGTTAATTATTAAAA----..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
..........................................................................................................AATAAACGACTATATT-TAATGT.......................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.........................................................................................................................................................................................................................ATGAACATCCACATTTTTATAACGATAAA--................................................................................................................................................................................................................................................2911.00101000
...........................................................................................................ATAAACGACTATATT-TAATGT.......................................................................................................................................................................................................................................................................................................................................................................2111.00100010
..................................................................................................................................................................................................................................................................................................................................................ATAAACTTCAGAATAAAAC---A...............................................................................................................................2011.00101000
..........................ATC---------------------AAGA-------------------------GAAAGCAAAACAA---AAAAA....................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
....................................................................................................................................................................................................................................................................................................................................CAAAATTCCC----ATAAACTTCAGAATAAAAC---................................................................................................................................2911.00101000
.........................................................................................................................................................................................................AAAAACAAAAAACAACATGAACATCCA....................................................................................................................................................................................................................................................................2711.00100010
...............................................................................................................................................................................................................AAAAAACAACATGAACATCC.....................................................................................................................................................................................................................................................................2011.00100010
.........................................................................................................................................................................................................................................................................................................................ACACATCCACGCAAAATTCCC----ATAAACT...............................................................................................................................................2811.00101000
...........................................................................................................................................................................ATACATACTTAAATTA-AA-------CAAAAAAAACA........................................................................................................................................................................................................................................................................................2911.00101000
..........................................................................................................................................................................................................................................................................................................................CACATCCACGCAAAATTCCC----A.....................................................................................................................................................2111.00100010
....................................................................................................................................................................................................................................................................................................................GTAAAACACATCCACGCAAAATTCCC----A.....................................................................................................................................................2711.00101000
....................................................................................................................................................................................................................................................................................................................GTAAAACACATCCACGCAAAATT.............................................................................................................................................................2311.00101000
droVir3
ATTGACGCGTTAATTATTAATACAAAAAA---------------AAAAAA---AAAAAAAC--------AAAACAA--GAAAAACCAACAAA---AAAAAGG---AAATAAACGATTATATTTTAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATTCTTAATTAAA-----AACTTAAAAAC-------------------------------------------------------------A---------AC---AACAAACGCAA-------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAA---AT--SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................TCTCTGTTATTTTTTATATAAACTATTA............................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000100000000000000000000000000000000000000
.....................................................................................CAACAAA---AAAAAGG---AAATAAACGAT....................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................TATATAATTTCTCTGTTAT..............................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................AACCAACAAA---AAAAAGG---A..............................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000100000000000000000000000000000000000000000
............................................................................................................TAAACGATTATATTTTAATGT.......................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................TTCTTTTATATAATTTCTCTGTTATT.............................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................TTAAAAAC-------------------------------------------------------------A---------AC---AACAAACGCAA-------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA.........2611.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
ATTGACGCGTTAATTATTAATACATAAAA---------------AAAATAATAAAAAAA----------AAAACAACAAAAAAATCAAC------AAAAAGG---AAATAAACGATTATATTTTAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATTCTTAATTAA-----AAACTTAAAGAC-------------------------------------------------------------A---------AC---AACAAACGCAA-------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAAATAATTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................TCTTTTATATAATTTCTCTGTTAT..............................................................................................................................................................................................................................................................................................................................................2412.002200000
...................................................................................................................................CTTTTATATAATTTCTCTGTT................................................................................................................................................................................................................................................................................................................................................2111.001100000
.......................................................................................................................................TATATAATTTCTCTGTTAT..............................................................................................................................................................................................................................................................................................................................................1911.001100000
.......................................................................AACAACAAAAAAATCAAC------AAAAAGG---...............................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
droGri2
ATTGACGCGTTAATTATTAATACAAAATA---------------AAAATACAAAAAAAAAAAAA-----TT--AA---AAAAAATCAGCAAA---AAAAGCAAGGAAATAAACGATTATATTATAATGTTTCTTTTATATAATTTCTCTGTTATTTTTTATATAAACTATTATACTTAATT----AA-AAACGTAAAAA-------------------------------------------------------------------------C---AACAAACGCAA-------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAAAA-AT--SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................AA---AAAAGCAAGGAAATAAACG......................................................................................................................................................................................................................................................................................................................................................................................2111.00110

Generated: 05/18/2015 at 07:45 PM