ID:

dsi_28225

 Coordinate:

3r:4529428-4529577 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

Antisense to CDS [3r_4529524_4529547_-]; Antisense to five_prime_UTR [3r_4529548_4529639_-]; Antisense to exon [3r_4529524_4529639_-]; Antisense to intron [3r_4515921_4529523_-]

No Repeatable elements found

Sense Strand Reads

CCCGCTCAGCGTTTCACTTGGCCAATTTGTTTTGGCCCTGGTTCTTTTTAATTCCCTCGTCATGGTCTAACAACAGTTTACACTTAACCACTTTCTCACTTAACTAACTTAGTTTTCATCGTAATCCAGGCTTTATTTTTGCTCACCTCGTAATCCGACCTTAACGCCATGTTATTTTAATTTAACTCGATTATTCCCAGGGATGTGGAAAATTTACACAATTCCAACGTATCGATATTTCAGAAGTCGT
**************************************************..........((((((.........(((.......))).............(((((...)))))..............(((.........)))....(((.....))).......)))))).............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 SRR902008
ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..............................TTTGGCCCTGGTTCTTTTTGGTTACC.................................................................................................................................................................................................. 26 3 1 2.00 2 2 0 0 0 0 0 0 0
.....TCAGCGTTTCACTTGGCCAAT................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................TTCTTTTTGGTTACCTCGTCATGGTC....................................................................................................................................................................................... 26 3 1 1.00 1 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................AAAATTAACACAATCCCAA....................... 19 2 8 0.25 2 0 0 0 0 1 1 0 0
...................TGCCAATTTATTTTGGCCCT................................................................................................................................................................................................................... 20 2 6 0.17 1 0 0 0 1 0 0 0 0
..................................GCCCCGGGTCTTTTTAA....................................................................................................................................................................................................... 17 2 10 0.10 1 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................TCCCAGGGATGTAAAAA....................................... 17 2 15 0.07 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

--------------------------------------------------------------------------------------------------------------------------------------------------########################################################################################################
GGGCGAGTCGCAAAGTGAACCGGTTAAACAAAACCGGGACCAAGAAAAATTAAGGGAGCAGTACCAGATTGTTGTCAAATGTGAATTGGTGAAAGAGTGAATTGATTGAATCAAAAGTAGCATTAGGTCCGAAATAAAAACGAGTGGAGCATTAGGCTGGAATTGCGGTACAATAAAATTAAATTGAGCTAATAAGGGTCCCTACACCTTTTAAATGTGTTAAGGTTGCATAGCTATAAAGTCTTCAGCA
**************************************************..........((((((.........(((.......))).............(((((...)))))..............(((.........)))....(((.....))).......)))))).............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 M024
male body		 O002
Head
 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
...........................................................................................................GAATCAAAAGTAGCATTAGGTC......................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................GTGGAGCATTAGGCTGGA......................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................GGCATTAGGCTGGAATTG..................................................................................... 18 1 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................................AAAACGAGTGGAGCATTAGGC............................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................................................GAGCATTAGGCTGGAATT...................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................................GCATTAGGCTGGAATTGCGGTA................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0
..........................................................................................................................................AACGAGTGGAGCATTAGGC............................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................GAGTGGAGCATTAGGCTGGAATTGC.................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0
............................................................GTACCAGATTGTTGTCAAATG......................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0
..................................................................................................................................................GAGCATTAGGCTGGAATTGCGGT................................................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0
...................................................................................................................................AAATAAAAACGAGTGGAGCATTAGGC............................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................AGGCTGGAATTGCGGTACAATA........................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0
..................................CGGGACCAAGAAAAATTA...................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................AAAAACGAGTGTAGCATTAGGCTGGA......................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................TGGAGCATTAGGCTGGAATTGCGG.................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0
...................................................................................................................................................AGCATTAGGCTGGAATTGC.................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0
......................................................................................................................................AAAAAACGAGTGTAGCATT................................................................................................. 19 2 4 0.25 1 0 0 0 0 0 0 1
.........................................................................................TGAAAGAGTGAAAGGATT............................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 1 0 0
........................................CAAGAAAAGTTGAGGGA................................................................................................................................................................................................. 17 2 17 0.06 1 0 0 0 0 0 0 1

Generated: 04/24/2015 at 09:28 AM