ID:

dsi_28216

 Coordinate:

3l:8111708-8111857 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-7.4 -7.4 -7.0 -7.0

Flybase annnotation

CDS [3l_8111858_8112577_-]; exon [3l_8111858_8112577_-]; intron [3l_8111073_8111857_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGCAGGTGCCCCAGGTGGGCGGACCCAACTCAGGACCTCCACGAATGCAGGTACACAACCATTGTTCTAGCCCCGCATGGCCTCAAGAGGTCTCATCGTTAGTAGAAATATCGCTCGGTTCTATTTTGTTTTGTTTCTACATTCCTACATTATTTCCTATTTCCATCAAAATTGTTCTGAATGCAAAATTTGCTTACTTAGGTAAAATTAGAAACCCTAAATATACGACTTTTCCTGTATAGTTTATAAA
****************************************************************************..(((......(((....((((...(((....)))....))))))).....)))************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
...................................................................................................................CGGTTCTATTTTGTT........................................................................................................................ 15 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................CGTTTGGTTCTATTTTGTT........................................................................................................................ 19 2 14 1.50 21 2 6 0 8 0 0 0 5 0 0
............................................................................ATGGCCTCAAGAGGTCTCA........................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..............GTGGGCGGACCCAACTCAGGA....................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..............................................................................................................ACGCGCGGTTCTATTTTG.......................................................................................................................... 18 2 3 1.00 3 0 1 2 0 0 0 0 0 0 0
.................................................................................................................CTCGGTTCTATTTTG.......................................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................GGGCGGACCCAACTCAGGA....................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................AGGACCTCCACGAATGCA......................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................TTAGTAGAAATATCGCTCGGT................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................CGGTTCTATTTTGTTGG...................................................................................................................... 17 2 20 0.35 7 2 0 3 0 0 0 0 0 2 0
.................................................................................................................CTCGGTTCTATTTTGTTGGTTTT.................................................................................................................. 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................CCTCGGTTCTATTTTG.......................................................................................................................... 16 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................CGCTTGGTTCTATTTTGTTG....................................................................................................................... 20 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................ACGCGCGGTTCTATTTTGTTG....................................................................................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0
.........CCCAGGTGGTCGGACCA................................................................................................................................................................................................................................ 17 2 12 0.17 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................................GGTTCTATTTTGTTGGTTTTCT................................................................................................................ 22 3 7 0.14 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................TCGGTTCTATTTTGCT........................................................................................................................ 16 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................GCGGTTCTATTTTGTT........................................................................................................................ 16 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................CGGTTCTATTTTGTTG....................................................................................................................... 16 1 9 0.11 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................AGGTAATAGTAGAAACC.................................. 17 2 10 0.10 1 0 0 0 0 0 0 1 0 0 0
..................................................................................................................TTGGTTCTATTTTGTT........................................................................................................................ 16 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0
................................................................................................................GTTTGGTTCTATTTTGTT........................................................................................................................ 18 2 20 0.10 2 0 0 0 0 0 0 0 2 0 0
....................................................................................................................................GTTTCTACAGTCCGACATC................................................................................................... 19 3 20 0.10 2 0 0 0 0 2 0 0 0 0 0
...............................................................GTTCGAGCCCTGCATGCCC........................................................................................................................................................................ 19 3 15 0.07 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................CTCGGTTCTATTTTGTTGGT..................................................................................................................... 20 3 16 0.06 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................GCCCGGTTCTATTGTGT......................................................................................................................... 17 2 16 0.06 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................CGGTTCTATTTTGCT........................................................................................................................ 15 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................CCTCGGTTCTATTTTGC......................................................................................................................... 17 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................CCTCGGTTCTATTTT........................................................................................................................... 15 1 19 0.05 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTCTTACATAGGTAAAA........................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......................ATCGAATTCAGGACCTCCA................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................TCGGTTCTATTTTGTTGGTTT................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GCGTCCACGGGGTCCACCCGCCTGGGTTGAGTCCTGGAGGTGCTTACGTCCATGTGTTGGTAACAAGATCGGGGCGTACCGGAGTTCTCCAGAGTAGCAATCATCTTTATAGCGAGCCAAGATAAAACAAAACAAAGATGTAAGGATGTAATAAAGGATAAAGGTAGTTTTAACAAGACTTACGTTTTAAACGAATGAATCCATTTTAATCTTTGGGATTTATATGCTGAAAAGGACATATCAAATATTT
************************************************************************************************************************..(((......(((....((((...(((....)))....))))))).....)))**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
.....................................................................................................................................................................AGTTGTAAGAAGACTTACG.................................................................. 19 2 2 2.00 4 4 0 0 0 0 0 0 0
...................GCCTGGCTTGTGTCCTGGA.................................................................................................................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................TGAAAGGGACATATCAAA..... 18 1 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................AGGTAGTTTTAACAAGTCTTAAT.................................................................. 23 3 1 1.00 1 0 0 1 0 0 0 0 0
....................CCTAGCTTGTGTCCTGGAGG.................................................................................................................................................................................................................. 20 3 5 0.60 3 0 0 0 2 0 0 1 0
.......................................................................................................................................................................................................................GGATTGATATGCTGAATA................. 18 2 2 0.50 1 1 0 0 0 0 0 0 0
.......................GGCTTGTGTCCTGGAGGT................................................................................................................................................................................................................. 18 2 3 0.33 1 0 0 0 0 1 0 0 0
..................CACCTGGCTTGTGTCCTGGA.................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 1 0 0 0 0
.....................CTAGCTTGTGTCCTGGAGG.................................................................................................................................................................................................................. 19 3 17 0.18 3 0 3 0 0 0 0 0 0
.................................................CCATGTGTTGGTTGCAAGTT..................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 1 0 0 0 0
....................CCTTGCTTGTGTCCTGGAGG.................................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 1 0 0 0 0
................................................................................................................................................................AAGGAAGTTTTATCAAGA........................................................................ 18 2 18 0.11 2 0 0 0 0 0 2 0 0
.....................................................................................................................................................................AGTTGTAAGAAGACTTA.................................................................... 17 2 20 0.10 2 2 0 0 0 0 0 0 0
.................................................................................GAGTGCTCCAGATTAG......................................................................................................................................................... 16 2 12 0.08 1 0 0 0 0 1 0 0 0
......................................................TGTTGGTTACAAGAT..................................................................................................................................................................................... 15 1 13 0.08 1 1 0 0 0 0 0 0 0
.........................................................TGGTAACTCGATGGGGGCG.............................................................................................................................................................................. 19 3 15 0.07 1 0 0 0 0 0 1 0 0
...............................................................................................................................CAAACCAAAGATGTTGGGA........................................................................................................ 19 3 17 0.06 1 1 0 0 0 0 0 0 0
....................CCTAGCTTGTGTCCTGGAG................................................................................................................................................................................................................... 19 3 18 0.06 1 0 0 0 1 0 0 0 0
....................CCTGGCTTGAGTGCTGG..................................................................................................................................................................................................................... 17 2 19 0.05 1 0 0 0 0 0 0 0 1
...GCCACGGGGTCCACTC....................................................................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0
................................................TCGACGAGTTGGTAACAAG....................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0
........................................TGCTTCTGTCCATGTG.................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................CAAGGGACATATCAAA..... 16 2 20 0.05 1 1 0 0 0 0 0 0 0

Generated: 04/24/2015 at 10:42 AM