ID:

dsi_28196

 Coordinate:

2r:4974425-4974493 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-8.4 -8.2 -8.2

Flybase annnotation

exon [2r_4974100_4974424_-]; CDS [2r_4974100_4974424_-]; CDS [2r_4974494_4974712_-]; exon [2r_4974494_4974738_-]; intron [2r_4974425_4974493_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------##################################################
CTCCCCTGGACTACTACATCCAAGTGCAATGTTCCCTGGGAATTCCAACGGTAGGAAATTCGCCAAGATACATGGTTTTACAAATGGAAAATACGTAAGGCATGTCTCCCCATCCCCAGGGCAATGGTCAATGCACCACGGATAACTTTTGGCTCGACACGGAGGGTGA
**************************************************................((.(((((.((((((.............))))))))))).))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
..........CTACTACATCCAAGG................................................................................................................................................ 15 1 5 2.40 12 0 8 4 0 0 0
..............................................................................................................................................TAACTTTTGGCTCGACACGGAGGG... 24 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................TGTCTCCCCATCCCCAGGGCA.............................................. 21 0 1 1.00 1 1 0 0 0 0 0
....................CAAGTGCAATGTTCCCTGGGA................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................TGGCTCGACACGGAGGGTGA 20 0 1 1.00 1 1 0 0 0 0 0
...................................................TAGGAAATTCGCCAAGATACATGGTTT........................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................AACTTTTGGCTCGACACGGAG..... 21 0 1 1.00 1 1 0 0 0 0 0
....................................................................TACATGGCTTTACAAATGGAAAATAC........................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
.....................................................GGGACTTTGCCAAGATACATGG.............................................................................................. 22 3 2 0.50 1 0 0 0 1 0 0
..............................GTTGCGTGGGAGTTCCAACG....................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0
.................................CCGTGGGATTTCCAACGGG..................................................................................................................... 19 3 13 0.08 1 0 0 0 0 1 0
........GGCTACTACATCCAAGG................................................................................................................................................ 17 2 15 0.07 1 0 0 1 0 0 0
..............................................................................................................................GTCACGGCACCACGGA........................... 16 2 20 0.05 1 1 0 0 0 0 0
......................................................................................................................AGGCAATGGTCAATG.................................... 15 1 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

GAGGGGACCTGATGATGTAGGTTCACGTTACAAGGGACCCTTAAGGTTGCCATCCTTTAAGCGGTTCTATGTACCAAAATGTTTACCTTTTATGCATTCCGTACAGAGGGGTAGGGGTCCCGTTACCAGTTACGTGGTGCCTATTGAAAACCGAGCTGTGCCTCCCACT
**************************************************................((.(((((.((((((.............))))))))))).))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
........................................................................................................AGAGGGGTAGGGGTCCCGTTA............................................ 21 0 1 1.00 1 1 0 0
................................AGGGACCCTTAAGGT.......................................................................................................................... 15 0 2 0.50 1 1 0 0
.......................................................................................................................................................GGAGCTGTGCCTGCCACT 18 2 4 0.25 1 0 1 0
...............................GAGGGACCCTTAAGGT.......................................................................................................................... 16 1 7 0.14 1 1 0 0
.........................................................................................................................................................AGCTGTGCCTGCCAC. 15 1 8 0.13 1 0 0 1
...............................GCGGGACCCTTAAGGTT......................................................................................................................... 17 2 17 0.06 1 1 0 0
.................................GCGACCCTTAAGGTT......................................................................................................................... 15 1 19 0.05 1 1 0 0
.............................................................AGGTTCTATGGACCAAAC.......................................................................................... 18 3 20 0.05 1 0 1 0
....................................ACCCTTAAGGTTACCAC.................................................................................................................... 17 2 20 0.05 1 1 0 0

Generated: 04/23/2015 at 09:14 AM