dsi_28189

AGTCTGGAGCCGCGGCAGGTGATAATATTCGAGGACCTGGTTCCGCAGGGGTACACTGTCATTCGCAATAGTCCTCCCTCTCTGGGAGATTTGAAATTAGCTTTTGACAAGTTGGCCAAATGGCATGCAGCCAGCATGAAAGTCATCAATGAGGTACGATTCACTGTAATATAGTATGTTTAATTTTACGAGTATTATCTATTTTTTCATCAGCAACCGAACTTCCTGAAGGAGTTCAAGTATGGCATGT ************************************************(((((((((((...((.....(((((((.....)))))....)).....))...)))).)))..(((....)))((((.....)))).....(((....))).))))........(((((((.(((..........)))..)))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR618934 dsim w501 ovaries	M053 female body	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M023 head
....................................................................................................................................AGCATGAAAGTCATCAATGAGC................................................................................................	22	1	2	1.00	2	2	0	0	0	0	0	0
..............................................AGGGGTACACTGTCATTCGC........................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0
........................ATATTCGAGGACCTGGTTCCGCAGGG........................................................................................................................................................................................................	26	0	1	1.00	1	0	0	1	0	0	0	0
.................................................................................CTGGGAGATTTGAAA..........................................................................................................................................................	15	0	4	0.50	2	0	2	0	0	0	0	0
.....................................................................................................................................GCATGAAAGTCATCAATGAGC................................................................................................	21	1	2	0.50	1	1	0	0	0	0	0	0
..................................ACCTGGGTCCGCAGCGGTCC....................................................................................................................................................................................................	20	3	2	0.50	1	0	1	0	0	0	0	0
.....................................................................................................................................GCATGAAAGTCATCAATGAGCA...............................................................................................	22	2	3	0.33	1	0	0	1	0	0	0	0
..................................................................................TGGGAGATTTGAAAT.........................................................................................................................................................	15	0	4	0.25	1	0	1	0	0	0	0	0
....TGGAGCCGCCGCAGGTG.....................................................................................................................................................................................................................................	17	1	4	0.25	1	0	1	0	0	0	0	0
..................................................................TATAGTACTCCTTCTCTGGG....................................................................................................................................................................	20	3	4	0.25	1	0	0	0	1	0	0	0
................................................................................TCTGGGAGACTTGAAA..........................................................................................................................................................	16	1	6	0.17	1	0	1	0	0	0	0	0
............................................................................................GAAATTAGTTGTTGACAA............................................................................................................................................	18	2	14	0.14	2	2	0	0	0	0	0	0
....................................................................TGGTCCACCCTCTCTCGGAG..................................................................................................................................................................	20	3	8	0.13	1	0	0	0	0	0	1	0
.......................AATATTCGTGGGCCTGGT.................................................................................................................................................................................................................	18	2	11	0.09	1	0	0	0	0	1	0	0
.................................................................................CTGGGAGATTTGAAT..........................................................................................................................................................	15	1	12	0.08	1	0	1	0	0	0	0	0
...........................................................................................TGAAATTAGTTGTTGACA.............................................................................................................................................	18	2	13	0.08	1	0	0	0	0	0	0	1
.....................TTAATATTCGTGGGCCTGGT.................................................................................................................................................................................................................	20	3	13	0.08	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................GAACTTGCTGAAGGA.................	15	1	20	0.05	1	0	0	0	0	1	0	0

TCAGACCTCGGCGCCGTCCACTATTATAAGCTCCTGGACCAAGGCGTCCCCATGTGACAGTAAGCGTTATCAGGAGGGAGAGACCCTCTAAACTTTAATCGAAAACTGTTCAACCGGTTTACCGTACGTCGGTCGTACTTTCAGTAGTTACTCCATGCTAAGTGACATTATATCATACAAATTAAAATGCTCATAATAGATAAAAAAGTAGTCGTTGGCTTGAAGGACTTCCTCAAGTTCATACCGTACA ************************************************(((((((((((...((.....(((((((.....)))))....)).....))...)))).)))..(((....)))((((.....)))).....(((....))).))))........(((((((.(((..........)))..)))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553487 NRT_0-2 hours eggs
...............................................................................................................................................................................................................GTAGTCGTTTGCTCGAAG.........................	18	2	6	0.17	1	1	0
............................................................................................................................................TCCGTAATTGCTCCATGCT...........................................................................................	19	3	11	0.09	1	0	1

Species	Coordinate	ID	Alignment
droSim2	3r:20628554-20628803 +	dsi_28189	AGTCTGGAGCCGCGGCAGGTGATAATATTCGAGGACCTGGTTCCGCAGGGGTACACTGTCATTCGCAATAGTCCTCCCTCTCTGGGAGATTTGAAATTAGCTTTTGACAAGTTGGCCAAATGGCATGCAGCCAGCATGAAAGTCATCAATGAGGTACGATTC------ACTGTAATA---------TAG-----TA--------------TGTTT-------------------AAT---------TTTA---CGAGTATT--ATC--TATTTTTTCATCAGCAACCGAACTTCCTGAAGGAGTTCAAGTATGGCATGT
droSec2	scaffold_33:372749-372993 +		AGCTTGAAGCCGCGGCAAGTGATGATATTCGAGGATCTGGTTCCGCAGGGGTACACCGTCATCCGCGATAGTCCGCCCTCACTGGGGGATTTGAAACTGGCCTTTAACAAGCTGGCCAAGTGGCATGCGGCCAGCATGAAAGTCATCAATGAGGTACGATTC------------------------ATTGGTT---------------ACA-------------------TGTCAAAT---------ATC---TTTTTAAA--TTC--TTCTTTTCCGTTAGCAACCATACTTCCTGAAGGAATTTCAGTATGGCTTAT
dm3	chr3R:21111651-21111895 +		AGCTTGAAGCCGCGGCAAGTGATGATATTCGAGGATCTGGTTCCGCAGGGGTACACCGTCATCCGCGATAGCCCGCCCTCACTGGGGGATTTGAAATTGGCCTTCGACAAGCTGGCCAAGTGGCATGCGGTCAGCATGAAAGTCATCAATGAGGTAGGATTC------------------------ATTGGTT---------------GCG-------------------TGACAAAT---------ATC---CTTTTCAC--ATC--TTTTTTCCCTTTAGCAACCATACTTCCTAAAGGAATTTCAGTATGGCTTAT
droEre2	scaffold_4820:6931500-6931744 -		AGTCTGATGCCGCGGCAAGTGATGGTATTCGAGGATCTGGTTGCACAAGGATACACCGTCATCCGCGATAGTCCTCCCTCACTGGGGGATCTGAAATTGGCCTTCGACAAGCTGGCCAAGTGGCATGCGGTCAGCATGAAAGTCATCAATGAGGTAAGTTTC------------------------ATTGGTT---------------GTG-------------------TGACAAAT---------ATC---CTTTTAAC--AAC--TTATTTGCCATCAGCAACCAACTTTCCTAAAGGAATTCCAGTATGGCCTGT
droYak3	3R:25376807-25377058 -		AGCCTGAAGCCGCGGCAAGTGATGATCTTCGAGGATCTGGTTCCACAAGGATACACCGTCATTCGCGATAGTCCTCCCTCACTGGGCGATCTGAAATTGGCCTTTGACAAGCTGGCCAAGTGGCATGCGGTCAGCATGAAAGTCATCAATGAGGTAAGCTTC------------------------ATTGCTTATA--GAAT--ATA----TCCG-------------------GAAT---------ATC---CTTTTAAC--AAC--CTATTTTCCATTAGCAACCAAATTTCCTGAGGGAATTCAAGTATGGCTTGT
droEug1	scf7180000409692:273075-273322 -		AGCCTAACGCCGCGAAAAGTGTTGATATTCGAGGATCTGGTGCCGCAGGGATATACCGTCATTCGGAATAGTCCTCCCTCGGATGGGGATTTAAAGTTGGCCTACACCAAACTGGCCAAATGGCATGCAGTCAGCATGAAATTGATCAATGAGGTTAATAAT-----TTCTGTG---TTATGATTA--------------------TTCCT----------------TTT-------TAA--TTCT----------TTA------A--ATTCCTATCATCAGCAACCGAATTTCCTGAAGGAGTACAAGTATGGCTTCT
droBia1	scf7180000302136:1928310-1928558 +		AGCTTGAAACCGCGCCAAGTGATGATCTTCGAGGATCTGGTGCCGCAGGGGTACACCGTCATTCGGAATAGTCCACCATCAGTAGGGGATTTAAAATTAGTATTTGCCAAGCTGGCCAAGTGGCACGCAGTCAGCATGAAAGTTATTAATGAGGTAAGTTTA------------------------ATAAA---TACAT--TAAGTT-TTA-------------------TG----ATAGCATTAT----------TAA-A----A--TACCTCTTTTTCAGCAACCTACTTTTCTGAAGGAGTTCAAGTATGGTCTTT
droTak1	scf7180000413457:119621-119871 -		AGCCTCAAGCCGCGTCAGGTGATGATCTTCGAGGATCTGGTTCCCCAGGGATACACCGTCATCCGGAATAGTCCTCCCTCGGAGGGGGATTTGAAATTAGTCTTCGCTAAGCTAGCCAAATGGCATGCAGTCAGCATGAAAGTCATTAATGAGGTAAGATAC------------------------ATAAA---TTTTT--CTGGTT------TT-----AAAT------------GTATGATTTT----------ATA----ATT--ACCTTGTCCCTCAGCAACCTACTTTCTTGAAGGAGTTCAAGTATGGCCTAT
droEle1	scf7180000491212:465812-466058 +		AGTCTGGAGCCGCGGCAAGTGATGATTTTTGAGGACCTGGTGCCTCTGGGATACTTCGTCATTCGGGATCGTCCCGTTTCGCAGGAGGAACTTAAGACCGTCTTCTCGAAGCTGGCCAAATGGCATGCAGTCAGCATAAAAGTTATTAAGGAGGTGAGTTTA------------------------GTT-----CA--GGAG--GT----GGTTT-------------------CAT---------TATA---CTTCTTAT--ATT--TCATTTACCAACAGCGACCTGCCTTCCTCAAAGACTACAGATATGGTCTAT
droRho1	scf7180000779365:134615-134862 -		AGCCTGGAGCCGCGAAAAGTAATGATATTCGAGGATCTGGTGCCGCAGGGATACACCGTGATCCGAGATCGTCCAGCCACCAAAGAGGAACTGAAGAAAGCCTTCACCAAATTGGCCAAGTGGCATGCAGTCAGCATGAAAGTTATAGATGAGGTATGGACT-----TGCTCTAAC----------GAAG---------------------------ATTAAATCTCGAC-------TAA--T------------ACAAAA----G----TTTTCGTTCTAGCAACCTGACTTCCTGGAGGAATTCAAATATGGTATGT
droFic1	scf7180000454055:1025183-1025441 +		AGTCTGAAGCCCCGGCAAGTGATGATATTCGAGGATCTTGTGCCTCAGGGATACACTGTCATCCGGGACGGTCCTCCCACAGTGGAGGATCTGAAATTGGCCTTCTACAAGTTGGCCAAGTGGCATGCAGTCAGTATGAAATTCATCAATGAGGTAAGCTTA------------------------ATCAG---CTTTT--C--GTT----TCTA-----AGATCCTA------A-GTAGTATCCC----------TAA-A--TTACAAACTCCTCCACCAGCAACCCGATTTTCTTAAAGAGTTTAAGTATGGCCTCT
droKik1	scf7180000302307:771715-771958 +		AGCGTGGAACCGCGGCAGGTGATGATCTTCGAGGATCTAGTGCCGCAGGGCTACTCCGTCATCCGGGATCGTCCTGTCACGGAGAAGGAACTGAAGAAGGTCTTCGCCAAGCTTGCCAAATGGCATGCAGTCAGCATGAAGGTCATCAATGAGGTAACAATA------------------------CTG-----CA--------------TTTTT------A------------AAT---------TGGACTTCTGCTAAT--TCT---TTCACTCCATTAGAAACCCGAATTCCTAAAGGACTTTAAATACGGCATCT
droAna3	scaffold_13340:1305914-1306167 +		AGCTTAGAGCCGCGGGAGGTAATGATTTTCGAGGATCTGGTTCCGCAAGGATACTCGGTTATCCGGAATCGTCCTGTGAATGAGGCCGAATTAAAACTAGTCTTTGAGAAGCTGGCAAAATGGCATGCAGTAAGCATAAAGCTTTTAAATGAAGTAGGTTCC------------------------AAAATATGAC--TCTT--GTT----GGAA-------------------AAAG---------AAA-TTTTTCTAAT--TAA--ATTATTTTATTCAGCGCCCCGACTTCCTAAAGGAGTTTAAGTATGGAGTCT
droBip1	scf7180000396712:523080-523324 -		AGCCTGGAACCGCGGGAGGTTATGATCTTTGAGGACCTGGTGCCACTAGGATATTCCGTAGTACGGGATCGGCCTGTCAGCCAGAATGAGCTCAAGAACGTGTTTTCCAAGCTAGCAAAGTGGCATGCCGTGAGCATGAAAATTATAAAGGAGGTAGATAAC------------------------CATA----CC--TTTT------------AAGATTTTCTTATATT---------------------------TAAG---GC--TACTTTTTACGCAGCGACCTGAGTTCCTGAAGGAGTACAAGTACGGCCTGT
dp5	2:20560268-20560518 -		AGTCTTGAGCCCCGCCAGGTTATGATCTTTGAGGACCTGGTGCCGCAGGGATACACTGTCATCCGGGATCGTCCGGTTAGGGAGGAGGAACTATGCAGAGCCTACTCGAAACTGGCCAAATGGCATGCCATCAGCATGAAACTGCTCAATGAGGTGAGCTCT------------------------TTAATCTGCA--AACT--ATT----GACT-------------------CAA---------CCTC---CGACTAAG--ATT---CTCTTTTCAATAGCAACCCGATTTTCTGAAGGAGTTCCAATATGGTTGGA
droPer2	scaffold_3:3311198-3311448 -		AGTCTTGAGCCTCGCCAGGTTATGATCTTTGAGGACCTGGTGCCGCAGGGATACACTGTCATCCGGGATCGTCCGGTTAGGGAGGAGGAACTATGCAGAGCCTACTCGAAACTGGCCAAATGGCATGCCATCAGCATGAAACTGCTCAATGAGGTGAGCTCT------------------------TTAATCTGCA--AACT--ATT----GACT-------------------CAA---------TGTC---CGACTAAG--ATT---CTCTTTTCAATAGCAACCCGATTTTCTGAACGAGTTCCAATATGGTTGGA
droWil2	scf2_1100000004943:13514662-13514915 -		AGCCTGGAGCCAAGAAAAGTATTGATATTTGAAGATCTCTTGCCCTTGGATTATAATCCAATACGTAATCGTAATGCTACTCAAGAAGAAGTGCGTTGCGTATACGCGAAGTTGGCCAAATGGCATGCAGCTAGCTTGAAGATACAAAACGAGGTAGGTTAA------------------------AAGGTTTACA--TATA--AGC----GAAA-------------------AAAT---------ACC---GTTATTAATCTTT--TTCTTCACAATTAGCAACCGGAATTCCTCAAGGAATTCAAATATGGTTTAT
droVir3	scaffold_13047:2279336-2279592 -		AGCTTGGAGCCGAGGCAGGTAATGATCTTTGAGGACCTGGTTCCGCAAGGCTATTCGGTTGTAAGAAATCGCGACGCAACCATAGACGAACTGAAGTTAGCATTCCTTAAGCTGGCTAAATGGCATGCGGCTAGCTTTCATATACTGCATGAGGTATGCGGAACATATAA----------------TTAAA----------T--AAT----A-----ATCAAATATTT------AA-TAA--------T------ACTACT--AAA--TTTATTAACTTAAGCAACCAGATTACCTGCAAGAATTCAAACATGGCTTGT
droMoj3	scaffold_6540:22629811-22630060 +		AGCTTGGAGCCGCGCCAGGTTATGATCTTTGAAGATTTGGTGCCGCAGGGCTATAGGGTCGTTCGAAGTCGTAATCCAACCGTCCCTGAGCTGAGGATCGCTTTTCAGAAATTAGCCAAATGGCACGCATGCAGCTTCAAAGTGCTGAACGAGGTAAATAAT------------------------TTAGGTAATT--AATT--ACT-GCA-------------------TGATATAT---------GTG---T--TTG-----AC--TCAAACACTTTCAGCAACCGGATTTTCTGCAAGAATTCAAGTACGGTCTGT
droGri2	scaffold_14906:9140668-9140915 -		AGCTTGAAGCCTCGGCAGGTGATGATCTTTGAGGATCTGGTGCCACAAGGATATGAGGTCATAAGGGATCGAGACTCAAACATCGAGGAGATAAAGTGTGCGTTTTCTAAGCTCGCCAAATGGCATGCAGTTAGCGTTCACGTATTACATGAGGTAAGTAAT-----TAGTAGG---ATTACTTAA--------------------TTACA----------------TTT-------TAA--T------------AAC-AC--A-G--TTATTCTTGTTTAGCAACCGGATTACTTGCAAGAATTTAAATATGGCATGT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AGTCTGGAGCCGCGGCAGGTGATAATATTCGAGGACCTGGTTCCGCAGGGGTACACTGTCATTCGCAATAGTCCTCCCTCTCTGGGAGATTTGAAATTAGCTTTTGACAAGTTGGCCAAATGGCATGCAGCCAGCATGAAAGTCATCAATGAGGTACGATTC------ACTGTAATA---------TAG-----TA--------------TGTTT-------------------AAT---------TTTA---CGAGTATT--ATC--TATTTTTTCATCAGCAACCGAACTTCCTGAAGGAGTTCAAGTATGGCATGT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................................................................................................................................AGCATGAAAGTCATCAATGAGC.....................................................................................................................................................................	22	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................AGGGGTACACTGTCATTCGC.............................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ATATTCGAGGACCTGGTTCCGCAGGG.............................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................CTGGGAGATTTGAAA...............................................................................................................................................................................................................................	15	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.....................................................................................................................................GCATGAAAGTCATCAATGAGC.....................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................GCATGAAAGTCATCAATGAGCA....................................................................................................................................................................	22	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................TGGGAGATTTGAAAT..............................................................................................................................................................................................................................	15	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................CTGGGAGATTTGAAT...............................................................................................................................................................................................................................	15	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AGCTTGAAGCCGCGGCAAGTGATGATATTCGAGGATCTGGTTCCGCAGGGGTACACCGTCATCCGCGATAGTCCGCCCTCACTGGGGGATTTGAAACTGGCCTTTAACAAGCTGGCCAAGTGGCATGCGGCCAGCATGAAAGTCATCAATGAGGTACGATTC------------------------ATTGGTT---------------ACA-------------------TGTCAAAT---------ATC---TTTTTAAA--TTC--TTCTTTTCCGTTAGCAACCATACTTCCTGAAGGAATTTCAGTATGGCTTAT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................GAGGATCTGGTTCCGCAGG..............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
........................ATATTCGAGGATCTGGTTCC...................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
................AAGTGATGATATTCGAGGATC..........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................................................................................................................................AAGGAATTTCAGTATGGCTTA.	21	1	1.00	1	0	1	0	0
.........................................................................................................AACAAGCTGGCCAAGTGGCATGCG..............................................................................................................................................................................................	24	1	1.00	1	1	0	0	0
......................................................ACCGTCATCCGCGATAGTCCGC...................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.....GAAGCCGCGGCAAGTGATGATATTC.................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
.................................................................................................................GGCCAAGTGGCATGCGGCC...........................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
................AAGTGATGATATTCGAGGATCT.........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................................................................................................ACTTCCTGAAGGAATTTCAGT.........	21	1	1.00	1	0	0	1	0
.....................................................................................................................................GCATGAAAGTCATCAATG........................................................................................................................................................................	18	1	1.00	1	0	0	1	0
................AAGTGATGATATTCGAGGATCTGGT......................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
....................................................ACACCGTCATCCGCGATAGTCCGCCCT................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0
.......AGCCGCGGCAAGTGATGAT.....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
...........................TTCGAGGATCTGGTTCCGCAGGGGT...........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
...................................................................ATAGTCCGCCCTCACTGGGGG.......................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
....................................................................................................................................AGCATGAAAGTCATCAATGAG......................................................................................................................................................................	21	1	1.00	1	0	0	0	1
...............................................................................................................................................................................................................................................................................................ATACTTCCTGAAGGAATTTCAGT.........	23	1	1.00	1	0	1	0	0
............................................GCAGGGGTACACCGTCATCCGC.............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.............................CGAGGATCTGGTTCCGCAGGGG............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
.......................................................................................................................................ATGAAAGTCATCAATGAGC.....................................................................................................................................................................	19	1	1.00	1	0	0	1	0
....................GATGATATTCGAGGATCT.........................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	1	0
......................TGATATTCGAGGATCTGGT......................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	1

dm3

AGCTTGAAGCCGCGGCAAGTGATGATATTCGAGGATCTGGTTCCGCAGGGGTACACCGTCATCCGCGATAGCCCGCCCTCACTGGGGGATTTGAAATTGGCCTTCGACAAGCTGGCCAAGTGGCATGCGGTCAGCATGAAAGTCATCAATGAGGTAGGATTC------------------------ATTGGTT---------------GCG-------------------TGACAAAT---------ATC---CTTTTCAC--ATC--TTTTTTCCCTTTAGCAACCATACTTCCTAAAGGAATTTCAGTATGGCTTAT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
AGCTTGAAGCCGCGGCAAGT...........................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................CCTTCGACAAGCTGGCC..........................................................................................................................................................................................................	17	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TGAAGCCGCGGCAAGTGATGATATT..................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................GCCAAGTGGCATGCGGTCAGC........................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AGCCGCGGCAAGTGATGATATTCGAG..............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CGACAAGCTGGCCAAGTG.....................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................GCGGTCAGCATGAAAGTCATC............................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................TGAGGTAGGATTC------------------------ATTGGTT---------------GCG-------------------TG.......................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................AAGCTGGCCAAGTGGCAT.................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................C------------------------ATTGGTT---------------GCG-------------------TGACAAAT---------........................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................ATTCGAGGATCTGGTTCCGC.................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GAAGCCGCGGCAAGTGATGAT.....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................AGCTGGCCAAGTGGCATGCGGTC...........................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................ATGAAAGTCATCAATGAGCA....................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GATGATATTCGAGGATCT.........................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TCAC--ATC--TTTTTTCCCTTTGCT....................................	22	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AGTCTGATGCCGCGGCAAGTGATGGTATTCGAGGATCTGGTTGCACAAGGATACACCGTCATCCGCGATAGTCCTCCCTCACTGGGGGATCTGAAATTGGCCTTCGACAAGCTGGCCAAGTGGCATGCGGTCAGCATGAAAGTCATCAATGAGGTAAGTTTC------------------------ATTGGTT---------------GTG-------------------TGACAAAT---------ATC---CTTTTAAC--AAC--TTATTTGCCATCAGCAACCAACTTTCCTAAAGGAATTCCAGTATGGCCTGT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....GATGCCGCGGCAAGTGATGGTAT...................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
AGTCTGATGCCGCGGCAAGTGATGGT.....................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
..........................ATTCGAGGATCTGGTTGCAC.................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.................................................GATACACCGTCATCCGCGATAGT.......................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.................AGTGATGGTATTCGAGGATCTGGTTG....................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
........................GTATTCGAGGATCTGGTTGCACAAGGAT...........................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
................AAGTGATGGTATTCGAGGATCTGGTT.....................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
...................TGATGGTATTCGAGGATCTGGT......................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................CGACAAGCTGGCCAAGTGGC...................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0
.GTCTGATGCCGCGGCAAGTGATGG......................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
....................GATGGTATTCGAGGATCT.........................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
........GCCGCGGCAAGTGATGGTATTCGAGG.............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
............................................ACAAGGATACACCGTCATCCGCGATAGT.......................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
....................GATGGTATTCGAGGATCTGGT......................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0
.GTCTGATGCCGCGGCAAGTGATGGT.....................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
..........................................GCACAAGGATACACCGTC...................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................GTAAGTTTC------------------------ATTGGTT---------------GTG-------------------TGACAAAT---------........................................................................	27	1	1.00	1	0	0	0	0	0	1	0
..........................ATTCGAGGATCTGGTTGC...................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0

droYak3

AGCCTGAAGCCGCGGCAAGTGATGATCTTCGAGGATCTGGTTCCACAAGGATACACCGTCATTCGCGATAGTCCTCCCTCACTGGGCGATCTGAAATTGGCCTTTGACAAGCTGGCCAAGTGGCATGCGGTCAGCATGAAAGTCATCAATGAGGTAAGCTTC------------------------ATTGCTTATA--GAAT--ATA----TCCG-------------------GAAT---------ATC---CTTTTAAC--AAC--CTATTTTCCATTAGCAACCAAATTTCCTGAGGGAATTCAAGTATGGCTTGT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................................................................................GGCCAAGTGGCATGCGGTCAGC........................................................................................................................................................................................	22	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0
.................................................GATACACCGTCATTCGCGATA.........................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...........................................CACAAGGATACACCGTCATT................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
................................................GGATACACCGTCATTCGCGATAGTC......................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
.................................................................................................................GGCCAAGTGGCATGCGGTCA..........................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................AAATTTCCTGAGGGAATTCAAGTATGGCT...	29	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...........................................................CATTCGCGATAGTCCTCCCTCACT............................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
.GCCTGAAGCCGCGGCAAGTGAT........................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.....GAAGCCGCGGCAAGTGATGAT.....................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
................AAGTGATGATCTTCGAGGATCTGGTTC....................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............CAAGTGATGATCTTCGAGGATCTG........................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................TCCACAAGGATACACCGTC...................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................CTTCGAGGATCTGGTTCCACAAG..............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................AAGTGATGATCTTCGAGGATCTG........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................TAGTCCTCCCTCACTGGGCGATCTG..................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................AAGTGATGATCTTCGAGGATCT.........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................CTCACTGGGCGATCTGAAATTGGC..........................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................ATTTCCTGAGGGAATTCAAGTATGGC....	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................GATCTGGTTCCACAAGGATACACCGT....................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................GGCCAAGTGGCATGCGGTCAG.........................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TA--GAAT--ATA----TCCG-------------------GAAT---------ATC---C.................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............................................AGGATACACCGTCATTCGCGATAGTC......................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................GATAGTCCTCCCTCACTGGGC........................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TTCCTGAGGGAATTCAAGTATGGCTT..	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................CAAGGATACACCGTCATTCGC.............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................ATCTGGTTCCACAAGGATA..........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................CTGGTTCCACAAGGATACACCGTCATT................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................ATACACCGTCATTCGCGATAGTCCTCCCC................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.................................................................CGATAGTCCTCCCTCACTGGGCGAT.....................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................AGTGATGATCTTCGAGGAT...........................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............................................................................CACTGGGCGATCTGAAATTGGC..........................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................ATACACCGTCATTCGCGATAGT.......................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................ATCTTCGAGGATCTGGTTCC...................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................GTTCCACAAGGATACACCGTCATTCGC.............................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................CACAAGGATACACCGTCATTCGCGATA.........................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................CCTGAGGGAATTCAAGTATGGCT...	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................TGGGCGATCTGAAATTGGC..........................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................GGCCAAGTGGCATGCGGTCAGCATGAAAGT................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................TGGCCAAGTGGCATGCGGTC...........................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................CATTCGCGATAGTCCTCCCTCAC.............................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......................GATCTTCGAGGATCTGGTTCCA..................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................GATGATCTTCGAGGATCTGGTTCCA..................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................GATACACCGTCATTCGCG............................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................CCTGAGGGAATTCAAGTATGGCTT..	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................CTTTGACAAGCTGGCCAAGTG.....................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................TCCCTCACTGGGCGATCTGAA................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................CATTCGCGATAGTCCTCCCT................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..................................................ATACACCGTCATTCGCGATAGTCCTCCCT................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.............GGCAAGTGATGATCTTCGAG..............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......AGCCGCGGCAAGTGATGATCTTCGAGGAT...........................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................ATCTGAAATTGGCCTTTGACAAGCT..............................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................CAAGTGGCATGCGGTCAG.........................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................TTTGACAAGCTGGCCAAGTGG....................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................GACAAGCTGGCCAAGTGGCATGCGGT............................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
AGCCTGAAGCCGCGGCAAGT...........................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................GTCATTCGCGATAGTCCTCCCTCACT............................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
AGCCTGAAGCCGCGGCAAGTGAT........................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................TCATTCGCGATAGTCCTCCCTCACT............................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..............................GAGGATCTGGTTCCACAAG..............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................TTTCCTGAGGGAATTCAAGTATGGC....	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................AGTGATGATCTTCGAGGATCTGGTTC....................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............GGCAAGTGATGATCTTCGAGGATCTG........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............GGCAAGTGATGATCTTCGAGGA............................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................AGCATGAAAGTCATCAATGAAC.....................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................AAGTGATGATCTTCGAGGATCTGGT......................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............CAAGTGATGATCTTCGAGGAT...........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

AGCCTAACGCCGCGAAAAGTGTTGATATTCGAGGATCTGGTGCCGCAGGGATATACCGTCATTCGGAATAGTCCTCCCTCGGATGGGGATTTAAAGTTGGCCTACACCAAACTGGCCAAATGGCATGCAGTCAGCATGAAATTGATCAATGAGGTTAATAAT-----TTCTGTG---TTATGATTA--------------------TTCCT----------------TTT-------TAA--TTCT----------TTA------A--ATTCCTATCATCAGCAACCGAATTTCCTGAAGGAGTACAAGTATGGCTTCT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGCTTGAAACCGCGCCAAGTGATGATCTTCGAGGATCTGGTGCCGCAGGGGTACACCGTCATTCGGAATAGTCCACCATCAGTAGGGGATTTAAAATTAGTATTTGCCAAGCTGGCCAAGTGGCACGCAGTCAGCATGAAAGTTATTAATGAGGTAAGTTTA------------------------ATAAA---TACAT--TAAGTT-TTA-------------------TG----ATAGCATTAT----------TAA-A----A--TACCTCTTTTTCAGCAACCTACTTTTCTGAAGGAGTTCAAGTATGGTCTTT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGCCTCAAGCCGCGTCAGGTGATGATCTTCGAGGATCTGGTTCCCCAGGGATACACCGTCATCCGGAATAGTCCTCCCTCGGAGGGGGATTTGAAATTAGTCTTCGCTAAGCTAGCCAAATGGCATGCAGTCAGCATGAAAGTCATTAATGAGGTAAGATAC------------------------ATAAA---TTTTT--CTGGTT------TT-----AAAT------------GTATGATTTT----------ATA----ATT--ACCTTGTCCCTCAGCAACCTACTTTCTTGAAGGAGTTCAAGTATGGCCTAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGTCTGGAGCCGCGGCAAGTGATGATTTTTGAGGACCTGGTGCCTCTGGGATACTTCGTCATTCGGGATCGTCCCGTTTCGCAGGAGGAACTTAAGACCGTCTTCTCGAAGCTGGCCAAATGGCATGCAGTCAGCATAAAAGTTATTAAGGAGGTGAGTTTA------------------------GTT-----CA--GGAG--GT----GGTTT-------------------CAT---------TATA---CTTCTTAT--ATT--TCATTTACCAACAGCGACCTGCCTTCCTCAAAGACTACAGATATGGTCTAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGCCTGGAGCCGCGAAAAGTAATGATATTCGAGGATCTGGTGCCGCAGGGATACACCGTGATCCGAGATCGTCCAGCCACCAAAGAGGAACTGAAGAAAGCCTTCACCAAATTGGCCAAGTGGCATGCAGTCAGCATGAAAGTTATAGATGAGGTATGGACT-----TGCTCTAAC----------GAAG---------------------------ATTAAATCTCGAC-------TAA--T------------ACAAAA----G----TTTTCGTTCTAGCAACCTGACTTCCTGGAGGAATTCAAATATGGTATGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGTCTGAAGCCCCGGCAAGTGATGATATTCGAGGATCTTGTGCCTCAGGGATACACTGTCATCCGGGACGGTCCTCCCACAGTGGAGGATCTGAAATTGGCCTTCTACAAGTTGGCCAAGTGGCATGCAGTCAGTATGAAATTCATCAATGAGGTAAGCTTA------------------------ATCAG---CTTTT--C--GTT----TCTA-----AGATCCTA------A-GTAGTATCCC----------TAA-A--TTACAAACTCCTCCACCAGCAACCCGATTTTCTTAAAGAGTTTAAGTATGGCCTCT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGCGTGGAACCGCGGCAGGTGATGATCTTCGAGGATCTAGTGCCGCAGGGCTACTCCGTCATCCGGGATCGTCCTGTCACGGAGAAGGAACTGAAGAAGGTCTTCGCCAAGCTTGCCAAATGGCATGCAGTCAGCATGAAGGTCATCAATGAGGTAACAATA------------------------CTG-----CA--------------TTTTT------A------------AAT---------TGGACTTCTGCTAAT--TCT---TTCACTCCATTAGAAACCCGAATTCCTAAAGGACTTTAAATACGGCATCT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AGCTTAGAGCCGCGGGAGGTAATGATTTTCGAGGATCTGGTTCCGCAAGGATACTCGGTTATCCGGAATCGTCCTGTGAATGAGGCCGAATTAAAACTAGTCTTTGAGAAGCTGGCAAAATGGCATGCAGTAAGCATAAAGCTTTTAAATGAAGTAGGTTCC------------------------AAAATATGAC--TCTT--GTT----GGAA-------------------AAAG---------AAA-TTTTTCTAAT--TAA--ATTATTTTATTCAGCGCCCCGACTTCCTAAAGGAGTTTAAGTATGGAGTCT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................ATCGTCCTGTGAATGAGGCC........................................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	4	0
AGCTTAGAGCCGCGGGAGGT...........................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	1	2	0
.......................GATTTTCGAGGATCTGGTT.....................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	1	0	0	0
..................GTAATGATTTTCGAGGATCTGGTT.....................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	2	0
...........................TTCGAGGATCTGGTTCCGCAAGG.............................................................................................................................................................................................................................................................................	23	1	2.00	2	1	0	0	0	1	0
............................................................ATCCGGAATCGTCCTGTGAATGA............................................................................................................................................................................................................................................	23	1	2.00	2	1	1	0	0	0	0
.......................GATTTTCGAGGATCTGGTTCCGCAAG..............................................................................................................................................................................................................................................................................	26	1	2.00	2	0	1	0	0	1	0
.................GGTAATGATTTTCGAGGATCTGGTTC....................................................................................................................................................................................................................................................................................	26	1	2.00	2	1	0	0	0	0	1
...................................................................ATCGTCCTGTGAATGAGGCCGA......................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	1	1	0
..................................................................................................................................................................................................................................................................................................CTTCCTAAAGGAGTTTAAGTATGGA....	25	1	1.00	1	1	0	0	0	0	0
.......................GATTTTCGAGGATCTGGT......................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0
.............................................................TCCGGAATCGTCCTGTGAATG.............................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................................................................................................TGAGAAGCTGGCAAAATGGCA..................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.............................................................................................................AGCTGGCAAAATGGCATGCAGT............................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.............................................................TCCGGAATCGTCCTGTGAATGAGGCC........................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...................................................................................................................CAAAATGGCATGCAGTAAGC........................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.............................CGAGGATCTGGTTCCGCAAGGATA..........................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.GCTTAGAGCCGCGGGAGGTAATGAT.....................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................................................................GTCCTGTGAATGAGGCCGAATT...................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.........................................................................................ATTAAAACTAGTCTTTGAGAA.................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.......................GATTTTCGAGGATCTGGTTCCGCAAGGA............................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
.....AGAGCCGCGGGAGGTAATG.......................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..................GTAATGATTTTCGAGGAT...........................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.................GGTAATGATTTTCGAGGATCTGGT......................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
............................................................ATCCGGAATCGTCCTGTGAATGAGGC.........................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
..................................................ATACTCGGTTATCCGGAATCGTCCT....................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
........................................................................................AATTAAAACTAGTCTTTGAGAAGCC..............................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.........................................................GTTATCCGGAATCGTCCTGTGA................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
AGCTTAGAGCCGCGGGAGGTA..........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.......................GATTTTCGAGGATCTGGTTCCGCA................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
......................................................................................................................AATGGCATGCAGTAAGCAT......................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..................................ATCTGGTTCCGCAAGGATAC.........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
AGCTTAGAGCCGCGGGAGGTAATG.......................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................GTAATGATTTTCGAGGATCTGGTTC....................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
.....................................................CTCGGTTATCCGGAATCGTC......................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.....................................................CTCGGTTATCCGGAATCGTCCTGTG.................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.....................................................................................................CTTTGAGAAGCTGGCAAAATGGCATGCA..............................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0

droBip1

AGCCTGGAACCGCGGGAGGTTATGATCTTTGAGGACCTGGTGCCACTAGGATATTCCGTAGTACGGGATCGGCCTGTCAGCCAGAATGAGCTCAAGAACGTGTTTTCCAAGCTAGCAAAGTGGCATGCCGTGAGCATGAAAATTATAAAGGAGGTAGATAAC------------------------CATA----CC--TTTT------------AAGATTTTCTTATATT---------------------------TAAG---GC--TACTTTTTACGCAGCGACCTGAGTTCCTGAAGGAGTACAAGTACGGCCTGT	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGTCTTGAGCCCCGCCAGGTTATGATCTTTGAGGACCTGGTGCCGCAGGGATACACTGTCATCCGGGATCGTCCGGTTAGGGAGGAGGAACTATGCAGAGCCTACTCGAAACTGGCCAAATGGCATGCCATCAGCATGAAACTGCTCAATGAGGTGAGCTCT------------------------TTAATCTGCA--AACT--ATT----GACT-------------------CAA---------CCTC---CGACTAAG--ATT---CTCTTTTCAATAGCAACCCGATTTTCTGAAGGAGTTCCAATATGGTTGGA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................................................GCATGAAACTGCTCAATGAGC.....................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................CGTCCGGTTAGGGAGGAGGAACT...................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................ACTATGCAGAGCCTACTCGAAACTGGC...........................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AACCCGATTTTCTGAAGGAGT...............	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0
....................................................ACACTGTCATCCGGGATCGTCC.....................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................ACCCGATTTTCTGAAGGAG................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................ATCGTCCGGTTAGGGAGGAGGA......................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................CCATCAGCATGAAACTGCTCAATGAGC.....................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................GCAACCCGATTTTCTGAAGC..................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................CGGTTAGGGAGGAGGAACTATGC...............................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................CCTACTCGAAACTGGCCAAATGGCATGC...............................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................GAACTATGCAGAGCCTACTC....................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AACCCGATTTTCTGAAGGAG................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................GTTAGGGAGGAGGAACTATGCAGA............................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................CGAAACTGGCCAAATGGCATG................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................CGTCCGGTTAGGGAGGAGGAACTA..................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................GAACTATGCAGAGCCTACTCGAAACTG.............................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CA--AACT--ATT----GACT-------------------CAA---------CCTC---C.................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................CGTCCGGTTAGGGAGGAGG.......................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................GGTTAGGGAGGAGGAACT...................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................CAAATGGCATGCCATCAGC........................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................ATGAAACTGCTCAATGAGC.....................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................TGAAACTGCTCAATGAGC.....................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGTCTTGAGCCTCGCCAGGTTATGATCTTTGAGGACCTGGTGCCGCAGGGATACACTGTCATCCGGGATCGTCCGGTTAGGGAGGAGGAACTATGCAGAGCCTACTCGAAACTGGCCAAATGGCATGCCATCAGCATGAAACTGCTCAATGAGGTGAGCTCT------------------------TTAATCTGCA--AACT--ATT----GACT-------------------CAA---------TGTC---CGACTAAG--ATT---CTCTTTTCAATAGCAACCCGATTTTCTGAACGAGTTCCAATATGGTTGGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................ATACACTGTCATCCGGGATCGTCCGGT..................................................................................................................................................................................................................................................	27	1	3.00	3	3	0	0	0	0	0
..................GTTATGATCTTTGAGGACCT.........................................................................................................................................................................................................................................................................................	20	1	3.00	3	3	0	0	0	0	0
..................................................ATACACTGTCATCCGGGATC.........................................................................................................................................................................................................................................................	20	1	3.00	3	0	1	0	0	0	2
................................................................GGGATCGTCCGGTTAGGGAGGA.........................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
...................TTATGATCTTTGAGGACCT.........................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
..........................................................................................CTATGCAGAGCCTACTCGAAA................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..................................................ATACACTGTCATCCGGGATCGTCCG....................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................TGAGCTCT------------------------TTAATCTGCA--AACT--...................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
......................................................................................................TACTCGAAACTGGCCAAAT......................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..........................................................................GGTTAGGGAGGAGGAACTATGCA..............................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..................................................................GATCGTCCGGTTAGGGAGGA.........................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
............................................................ATCCGGGATCGTCCGGTTAGGGA............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................GCAACCCGATTTTCTGAACGA.................	21	1	1.00	1	0	1	0	0	0	0
.....................................................................CGTCCGGTTAGGGAGGAGGA......................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.........................................................................................ACTATGCAGAGCCTACTCGAAACTG.............................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................ACGAGTTCCAATATGGTTGGA	21	1	1.00	1	0	0	0	0	0	1
......................................................................GTCCGGTTAGGGAGGAGGAACT...................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..................................................ATACACTGTCATCCGGGAT..........................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.....................................................................................................CTACTCGAAACTGGCCAAATGGCATGC...............................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.....................................................................CGTCCGGTTAGGGAGGAGG.......................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.....................................................CACTGTCATCCGGGATCGTCC.....................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...........................................................CATCCGGGATCGTCCGGTTAGGGAGGAG........................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1

droWil2

AGCCTGGAGCCAAGAAAAGTATTGATATTTGAAGATCTCTTGCCCTTGGATTATAATCCAATACGTAATCGTAATGCTACTCAAGAAGAAGTGCGTTGCGTATACGCGAAGTTGGCCAAATGGCATGCAGCTAGCTTGAAGATACAAAACGAGGTAGGTTAA------------------------AAGGTTTACA--TATA--AGC----GAAA-------------------AAAT---------ACC---GTTATTAATCTTT--TTCTTCACAATTAGCAACCGGAATTCCTCAAGGAATTCAAATATGGTTTAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................................................................................................................................................................................................................................................................AACCGGAATTCCTCAAGGA.................	19	1	1.00	1	0	0	0	1	0
.............................TGAAGATCTCTTGCCCTTGGA.............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
............................................................................CTACTCAAGAAGAAGTGCGTTGCGTA.........................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
...........................TTTGAAGATCTCTTGCCCTTGGA.............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0

droVir3

AGCTTGGAGCCGAGGCAGGTAATGATCTTTGAGGACCTGGTTCCGCAAGGCTATTCGGTTGTAAGAAATCGCGACGCAACCATAGACGAACTGAAGTTAGCATTCCTTAAGCTGGCTAAATGGCATGCGGCTAGCTTTCATATACTGCATGAGGTATGCGGAACATATAA----------------TTAAA----------T--AAT----A-----ATCAAATATTT------AA-TAA--------T------ACTACT--AAA--TTTATTAACTTAAGCAACCAGATTACCTGCAAGAATTCAAACATGGCTTGT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................................................................................................TAAGCAACCAGATTACCTGCA....................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................AAATGGCATGCGGCTAGCTTT.....................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................AATGATCTTTGAGGACCTGGTTCCGCAA...............................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................GTTCCGCAAGGCTATTCGGTT...................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................AGAAATCGCGACGCAACCATA...........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................ATTCCTTAAGCTGGCTAAATGG....................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................CCTGCAAGAATTCAAACATGG.....	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................ATCGCGACGCAACCATAGACG.......................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................CAAGGCTATTCGGTTGTAAGAAATCGC.......................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................AGGTAATGATCTTTGAGGACC..........................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................CATTCCTTAAGCTGGCTAAATGGCATG................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................AGACGAACTGAAGTTAGCATT.......................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGCTTGGAGCCGCGCCAGGTTATGATCTTTGAAGATTTGGTGCCGCAGGGCTATAGGGTCGTTCGAAGTCGTAATCCAACCGTCCCTGAGCTGAGGATCGCTTTTCAGAAATTAGCCAAATGGCACGCATGCAGCTTCAAAGTGCTGAACGAGGTAAATAAT------------------------TTAGGTAATT--AATT--ACT-GCA-------------------TGATATAT---------GTG---T--TTG-----AC--TCAAACACTTTCAGCAACCGGATTTTCTGCAAGAATTCAAGTACGGTCTGT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

AGCTTGAAGCCTCGGCAGGTGATGATCTTTGAGGATCTGGTGCCACAAGGATATGAGGTCATAAGGGATCGAGACTCAAACATCGAGGAGATAAAGTGTGCGTTTTCTAAGCTCGCCAAATGGCATGCAGTTAGCGTTCACGTATTACATGAGGTAAGTAAT-----TAGTAGG---ATTACTTAA--------------------TTACA----------------TTT-------TAA--T------------AAC-AC--A-G--TTATTCTTGTTTAGCAACCGGATTACTTGCAAGAATTTAAATATGGCATGT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.............................TGAGGATCTGGTGCCACAAGGATATGA.......................................................................................................................................................................................................................................................................	27	2	0.50	1	1	0

dsi_28189

3r:20628604-20628753 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-28.9	-28.8	-28.8