ID:

dsi_28182

 Coordinate:

2r:5780110-5780338 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.3 -33.0 -32.9

Flybase annnotation

exon [2r_5779788_5780109_+]; CDS [2r_5779788_5780109_+]; CDS [2r_5780339_5781103_+]; exon [2r_5780339_5781103_+]; intron [2r_5780110_5780338_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AACTACTTGGAACCAGTCATTGACAAATGGATTGAGTTTAGTCGCCAGTGGTGAGTACAATATCCTTTACAGGATCTCCCTTCAGACTTGAACTGCGGTATGATAAGTCAAAAAATTCCAGATGAACTATGAACTATGCACATTATCCTTTCGATTAAAAATGATATTATGGCTAAGATTCTTATCTTAGCTCCTGTCCACAATGCATTTGAGGCTCCTAAAGATTGTTCTAAGAAGCAAAATGCTTTAATCCTGATTTTCCATTTTCTCCAATTTTAGGATAGTGTCCGGCGTAATGCTGGCGATCGTGATCGCTGTGGTGGTGGCCT
**************************************************...................((((((.........((((((.((....))....))))))...........(((((.................)))))...............((((....(((((((((....)))))))))..))))......((((((...(((.((..(((....))).)).))).))))))....))))))........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
.................................................................................................................AATTCCAGATGAACTATGAACTATG............................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TTTAGGATAGCGTTCTGCGTA.................................. 21 3 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................CCAGATGAACTATGAACTA................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................ATTGTAGGATAGTGGCCG....................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................TAAGATCATTATGTTAGCTCC....................................................................................................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................CCTAAAGACTGTTCT.................................................................................................. 15 1 6 0.17 1 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................................................................................TTAGGATAGCGTTCTGCGT................................... 19 3 6 0.17 1 0 1 0 0 0 0 0 0
.............................................................................................................................ACTATGAACTATGCT............................................................................................................................................................................................. 15 1 16 0.13 2 0 0 0 2 0 0 0 0
...........................................................................................................................................................................................................................................................................................GTGTCGGGCGTATTGCT............................. 17 2 10 0.10 1 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................................CGATTGTAGGATAGTGGCC........................................ 19 3 10 0.10 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................ATTTGATCCTCCTAAAGAGT....................................................................................................... 20 3 13 0.08 1 0 0 0 0 1 0 0 0
.........................................................................................................................................................................TAGCTAAGATTCTTA................................................................................................................................................. 15 1 15 0.07 1 0 0 0 0 1 0 0 0
........................................................................................TGAACCGCGGTAGGATCA............................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................................................................GATGTTAGGATAGTGGCC........................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................................................................................TTTTAGGATAGCGACC........................................ 16 2 20 0.05 1 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................ATCGTAAAGATTGTTCTAC................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 1 0

Anti-sense strand reads

TTGATGAACCTTGGTCAGTAACTGTTTACCTAACTCAAATCAGCGGTCACCACTCATGTTATAGGAAATGTCCTAGAGGGAAGTCTGAACTTGACGCCATACTATTCAGTTTTTTAAGGTCTACTTGATACTTGATACGTGTAATAGGAAAGCTAATTTTTACTATAATACCGATTCTAAGAATAGAATCGAGGACAGGTGTTACGTAAACTCCGAGGATTTCTAACAAGATTCTTCGTTTTACGAAATTAGGACTAAAAGGTAAAAGAGGTTAAAATCCTATCACAGGCCGCATTACGACCGCTAGCACTAGCGACACCACCACCGGA
**************************************************...................((((((.........((((((.((....))....))))))...........(((((.................)))))...............((((....(((((((((....)))))))))..))))......((((((...(((.((..(((....))).)).))).))))))....))))))........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
........................................................................................................TTCAGTTTTAGAAGGTCTTCT............................................................................................................................................................................................................ 21 3 4 0.25 1 1 0 0 0 0
..................................................................................GTCTGAACTTGACTCCT...................................................................................................................................................................................................................................... 17 2 10 0.10 1 0 1 0 0 0
.....................................................................................................................................................................................................................................................................GTAAAAGAGGTTAAA..................................................... 15 0 12 0.08 1 0 0 1 0 0
.................................................................................AGTCCGAACTTGACTCC....................................................................................................................................................................................................................................... 17 2 13 0.08 1 0 1 0 0 0
..............................................................................................................................................................................................................................................................................................AGGCCGAAGTACGTCCGCT........................ 19 3 15 0.07 1 0 0 0 1 0
........................................................................................................................................................................................................................................................................AAAGGGGTAAAAATCCTA............................................... 18 2 17 0.06 1 0 0 1 0 0
.......................................................................................AAATTGGCGCCATACT.................................................................................................................................................................................................................................. 16 2 18 0.06 1 0 0 0 0 1

Generated: 04/23/2015 at 10:26 PM