ID:

dsi_28180

 Coordinate:

2r:2030186-2030335 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.1 -4.7 -4.7

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
Hoyak2DNAhAT-Ac+

Sense Strand Reads

ATCCCCAATGTCAGAGAACTGGTAACGGGTATCTGATAGTCGGGGAACTCGACTATAGCACTCTGTTTTGTTTTAAATTAATTTCTGATTACATGATCATTGCGAAAAGTACATTAGTTATTTAGATGTCGTATGGTATTTATTAAAAAACTATATATATTTTTACAAAAAAAAACAATTTCTTACCTTTATCTTTTAAGCTGAACCGTTGCCCCTAATGGATCTTTGCCGAAGAACAATTCGTCAAAAA
******************************************************************************************.....(((((.(((((((..((....))..))).....)))))))))...************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR902008
ovaries
 M053
female body
..........................................................................................................................................................................................................................TGGATCTTTGCCGAAGAACAATTCGTC..... 27 0 1 6.00 6 5 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ATCCTGAACCGTTGCCCCT.................................. 19 2 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0
..........................................................................................ACATGATCATTGCGAAAA.............................................................................................................................................. 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATGGATCTTTGCCGAAGA............... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................ATTTAGATGTCGTATGGTATT.............................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................GGGAACTCGACTATAGCACTC........................................................................................................................................................................................... 21 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGGATCTTTGCCGAAGAACAATTCGTCA.... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...........................................GGAACTCGACTATAGCACTCTGTTTTG.................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGGATCTTTGCCGAAGAACAATTCGT...... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGAACCGTTGCCCCTAATGGATCTTT....................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................CGGGGAACTCGACTATAGCACTC........................................................................................................................................................................................... 23 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
...................TGGTAACTGTTATCTGATAGTCGG............................................................................................................................................................................................................... 24 2 7 0.43 3 0 0 0 0 0 0 0 0 3 0 0
.............................................................................TTAATTTTTGATCACATGAT......................................................................................................................................................... 20 2 5 0.40 2 0 0 0 0 2 0 0 0 0 0 0
..........................................................................................................................................................ATATATTTTTACAAGAAAAA............................................................................ 20 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1
...........................................................................AATTAACTTCTGATT................................................................................................................................................................ 15 1 20 0.25 5 0 0 0 0 0 0 0 5 0 0 0
.............................TATCTGATAGTCGGGGAACTCGACT.................................................................................................................................................................................................... 25 0 20 0.25 5 0 0 0 0 5 0 0 0 0 0 0
..........................................................................AAATTAACTTCTGATT................................................................................................................................................................ 16 1 13 0.23 3 0 0 0 0 0 0 0 3 0 0 0
...............................................................TGTTTTGCTTTAAGTTAGTTTCT.................................................................................................................................................................... 23 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TAGTTATTTAGAAGTCGAACG................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0
.............................TATCTGATAGTCGGGGAACTCGA...................................................................................................................................................................................................... 23 0 20 0.15 3 0 0 0 3 0 0 0 0 0 0 0
...................TGGTAACGGGTATCTGATA.................................................................................................................................................................................................................... 19 0 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
...................TGGTAACTGTTATCTGATAGTCGGGGA............................................................................................................................................................................................................ 27 2 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................TTAGCCGAAGAACAAT.......... 16 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0
...........................GGTATCTGATAGTCGGGGAAC.......................................................................................................................................................................................................... 21 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
..........................GGGTATCTGATAGTCGGGGAAC.......................................................................................................................................................................................................... 22 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
..................................GATAGTCGGGGAACTCGACT.................................................................................................................................................................................................... 20 0 20 0.10 2 0 0 0 1 0 1 0 0 0 0 0
...........................................GGAACTCGACTATAGCATTCTGTTT...................................................................................................................................................................................... 25 1 12 0.08 1 0 0 0 0 0 0 0 1 0 0 0
..........................................GGGAACTCGACTATAGCATTCTGTTT...................................................................................................................................................................................... 26 1 12 0.08 1 0 0 0 0 0 0 0 0 0 1 0
.........................................GGGGAACTCGACTATAGCATTCTGTTT...................................................................................................................................................................................... 27 1 12 0.08 1 0 0 0 0 0 0 0 0 0 1 0
...........................................GGAACTCGACTATAGCATTCTGTTTTAT................................................................................................................................................................................... 28 2 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0
....................GGTAACGGGTATCTGATAGTCGGG.............................................................................................................................................................................................................. 24 0 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0
...........................................GGAACTCGACTATAGAATTCTGTTT...................................................................................................................................................................................... 25 2 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0
...............................TCTGATAGTCGGGGAACTCGACTAT.................................................................................................................................................................................................. 25 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................TGAAGAAGAATTCGTTAAAAA 21 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
......................TAACGGGTATCTGATAGTCGGGGAACT......................................................................................................................................................................................................... 27 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..............................ATCTGATAGTCGGGGAACTCGAC..................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
...............................TCTGATAGTCGGGGAACTCGACT.................................................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
..........................GGGTATCTGATAGTCGGGG............................................................................................................................................................................................................. 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.......................AACGGGTATCTGATAGTCGGGGAAC.......................................................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TAGGGGTTACAGTCTCTTGACCATTGCCCATAGACTATCAGCCCCTTGAGCTGATATCGTGAGACAAAACAAAATTTAATTAAAGACTAATGTACTAGTAACGCTTTTCATGTAATCAATAAATCTACAGCATACCATAAATAATTTTTTGATATATATAAAAATGTTTTTTTTTGTTAAAGAATGGAAATAGAAAATTCGACTTGGCAACGGGGATTACCTAGAAACGGCTTCTTGTTAAGCAGTTTTT
**************************************************************************************************************.....(((((.(((((((..((....))..))).....)))))))))...****************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
..................................................CTGACATCTTGAGACAAAA..................................................................................................................................................................................... 19 2 1 4.00 4 4 0 0 0 0 0 0
................................................ACCTGACATCTTGAGACAAA...................................................................................................................................................................................... 20 3 9 2.11 19 16 3 0 0 0 0 0
.................................................CCTGACATCTTGAGACAAAACA................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................ATAAAGAATTTTTTGATATA.............................................................................................. 20 1 2 0.50 1 0 0 0 1 0 0 0
................................................AGCTGACATCTTGAGACAAAAA.................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0
................................................AGATGACATCTTGAGACAAAA..................................................................................................................................................................................... 21 3 2 0.50 1 0 1 0 0 0 0 0
........................TGCCCATAGACTATCAGCCCCTTGAGCTG..................................................................................................................................................................................................... 29 0 20 0.45 9 0 0 8 0 1 0 0
............................CATAGACTATCAGCCC.............................................................................................................................................................................................................. 16 0 20 0.35 7 0 0 0 0 7 0 0
............................................ATTGAGCTGACATCTTGAGACA........................................................................................................................................................................................ 22 3 3 0.33 1 1 0 0 0 0 0 0
................................................ACCTGACATCTTGAGACAAAA..................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0
............................................CTAGAGCTGACATCTTGAGACA........................................................................................................................................................................................ 22 3 3 0.33 1 1 0 0 0 0 0 0
...................................................TGACATCTTGAGACAAAAAAAAA................................................................................................................................................................................ 23 3 3 0.33 1 1 0 0 0 0 0 0
............................................CTAGAGCTGACATCTTGAGAC......................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0
.................................................ACTGACATCTTGAGACAAAA..................................................................................................................................................................................... 20 3 9 0.33 3 2 1 0 0 0 0 0
..................................................CTGACATCTTGAGACAAA...................................................................................................................................................................................... 18 2 3 0.33 1 1 0 0 0 0 0 0
.................................................CCTGACATCTTGAGACAAA...................................................................................................................................................................................... 19 3 20 0.25 5 5 0 0 0 0 0 0
..................................................CTGACATCTTGAGACA........................................................................................................................................................................................ 16 2 20 0.20 4 4 0 0 0 0 0 0
................................................AACTGACATCTTGAGACAAAA..................................................................................................................................................................................... 21 3 5 0.20 1 0 1 0 0 0 0 0
.............................................TTGAGATGACATCTTGAGAC......................................................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0
...................................................TGACATCTTGAGACAAAA..................................................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................TGGTTAAGCAGTTTT. 15 1 15 0.13 2 0 0 2 0 0 0 0
..........................................................................................................................................................................................................................................TGGTTAAGCAGTTTTT 16 1 8 0.13 1 0 0 1 0 0 0 0
..................................................CTGACATCTTGAGACAA....................................................................................................................................................................................... 17 2 8 0.13 1 1 0 0 0 0 0 0
.................................................ACTGACATCGTGAGACAA....................................................................................................................................................................................... 18 2 8 0.13 1 1 0 0 0 0 0 0
...............................................................................................................................CAGTACACCATAAATAAT......................................................................................................... 18 2 11 0.09 1 0 0 0 0 0 0 1
....................CCATTGCCCATAGACTATCAGC................................................................................................................................................................................................................ 22 0 16 0.06 1 0 0 0 0 0 1 0
...................................................TGACATCTTGAGACAAA...................................................................................................................................................................................... 17 2 17 0.06 1 1 0 0 0 0 0 0
.......................................................................................................................................................ATATATATAGATATGTTTTTTTTTAT......................................................................... 26 3 17 0.06 1 0 0 0 0 0 1 0
..................................................CTGACATCTTGAGACAAAAA.................................................................................................................................................................................... 20 3 18 0.06 1 1 0 0 0 0 0 0
......................................CAGCCCCTTGAGCTGATATCGT.............................................................................................................................................................................................. 22 0 20 0.05 1 0 1 0 0 0 0 0
............................CATAGACTATCAGCCCCTTGAGCTG..................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0
......................ATTGCCCATAGACTATCAGCCCCTT........................................................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 1 0 0
...........................CCATAGACTATCAGCCCCTTGAGCTG..................................................................................................................................................................................................... 26 0 20 0.05 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:2030136-2030385 - dsi_28180 ATC----CCCAATGTCAGAGAACT---------------------------------GGTAACGGGTATCTGATAGTCGGG-GAACTCGACTATAGCA-CTCTGTTTTGTTTTAAATTA---ATTT-CT---------------------------------------------------------GATTACATGAT--CATTG-------------------------------------CGA---------------------------------------AAAG----TACATT------------AGTTATTTAGATGTCGT----ATGGTATTTATTAAAAAACTATATATATTTTTA----------------------------------------------------------------------------------------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA---AAACAATTTCTTAC---C-------TTT-ATCTTTTAAGCTGAACCGTTGCCCCTAATGGATCTTTGCCGAAGAACAATTCGTCAAAAA
droSec2 scaffold_42:254661-254939 + ATC----CCCAATGTCAGAAAACTGTTGAAC--TCACATTCGGTTTTCCATTAGCTTGGTAACGGGAATCTGATAGTCGGG-GAACTCGACTATAGCA-CTCTGTTTTGTTTTAAATTA---ATTT-CT---------------------------------------------------------GATTACATGAT--CATTG-------------------------------------CGA---------------------------------------AAAG----TACATT------------AGCTATTTAGATGTCGT----ATGGTATTTATTAAAAAACTATATATATTTTTA----------------------------------------------------------------------------------------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-----AAACAATTTCTTAC---A-------TTT-ATCTTTTAAGCTGAACCGTTGCCCCTAATGGATCTTTGCCGAAGAACAATTCGTCAAAAA
dm3 chr2R:1005258-1005548 - TTTATGCCCCAATGTCAGAAAACTGTTAAACTTTCACATTCGGCTTTCCATTAGCTGAGTAATGGGTATCTGATAGTCGGG-GCACTCGACTATAGCA-CTCTCTTAAGTTTTAAATAA---ATTG-TG---------------------------------------------------------GATTACATGATTACATTG-------------------------------------CGA---------------------------------------AAAG----TACATT------------AATTATTTAGAGTTCGC----ATGACACTTATTAAAAAATTATATATATTTTTA----------------------------------------------------------------------------------------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAC-AAACAATTTCTTAC---T-------TGT-ATCTTTTAAGCCGAACCCTTGCCCCTAATGGATCTTTGCCGAAGAACAATTCGTCAAAAA
droEre2 scaffold_4929:21880052-21880294 - TTC----CACTA---------------------------------------TCTCTGAATAACGGATATCTGATAGTCGAG-GAACTCGACTATAGCA-TTCTATCTTGTTTTTAAATA---ATTT-CT---------------------------------------------------------GTATATAAGAT--CATTG-------------------------------------TAA---------------------------------------AAGG----TACATTT-----------AAGCATTTAGAGTTTGT----ACAGCATTTATTAAA-AATTATAT-------------------------------------------TATAT-------------------T--------A--------------------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA-CAAAACAATTT-TTAC---T-------TGT-ATCTTTTAAGCTGAACCTTTGCCTCTAATGGATCTTTGCCGAAGAACAATTCGTCAAAAA
droYak3 3R:19572919-19573192 + ACC----GCCAA-----------------AAACTGTCCTTCGCACTTACACTAGCTGAGTAACGGGTATCATATAGTCGGG-GAACTCGACTATAGCG-TTCTCTCTTGTTTGCGACTATAAATAT-CAGTATTTTGATCAGAACATTCGAAATATTGGTCAGAATATGGAATGTCATACTTCGTT------------------------------------------------------------------------------------------------------------------------------------GAGTTCGT----A--------ATTAA-------------------------------------------------------------------------------------------ATTT-----------------------------------------------------------------------------------------------------------CCAATCGAACTGTGTTTTCAGA-----------------------------------------------------------------------------------------------------------AAAAAAT-T-AAAATTTTTCAA---ATTTTTTTTGCAATTTTTGATGATGATA----------TTTGGATTTTTGCAGAAAATCGAT----------
droEug1 scf7180000405830:28403-28615 - AAA----C-------------------------------------------------AGTAACGGGTATCTTATAGTCGCG-GCACTCGACTATAGCG-TTTCCTCTTGTTTTAACTTA---AACTTAT---------------------------------------------------------GG-T-------------G-------------------------------------CAA---------------------------------------GAAT----T----T------------AATTATATACA---T--ATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTATATACATATATATATATATATATATATATATCAGTAAAAATTTCATTCTCTAGGT-------------------------------TAC-A--TTTTTATAT---CAC---CTGCTCATATA-TTCCGCCTAAGTCCGATTCCTTGACGT
droBia1 scf7180000302291:152323-152546 - TCC----CTTA-----------------------------------------AGTTGAGTAACGAGTACCTGATAGTCGAG-GCACTCTACTATAACG-TTCTTCCTTGTTTTTATATA---TA-----------------------------------------------------------------TATATATT--CGTTT-------------------------------------TGG---------------------------------------GAAC----T---------------------GTTAGGAACTCAC----ATGACCCA-------GGATTAC-----------AAACATGTACTTCTTC---AAGGTAAAATTGCTTTATTCAGCT---------------T--------T--------------------CT-----------------------------------------------------------------------------------------------------------------A-------------AAAA-------------------------------------------------------------------------------------------------T-TAGCGATTTTTT--------------TT-AAAT-----------------------TTTAATCTCTGCCTAAAAAATATTCTAAAAAAA
droTak1 scf7180000415324:71704-71948 - ACT----CCCTT---------------------------------------TACCTGAGTAACGGGTATCTGATAGTCGGA-GCACCCGACTATAACG-TTCTATCTTGTTTTATTTTA---TT-T-TT---------------------------------------------------------GTT-----GA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACTTGTACATCACC---AT------------------AGCGTTTTAGTTGATATCATGTTTTGCTTTGAAATTTAACATCGGACTTTAACAGAAATATGTTCAAAAAAT-GTCATTAACTCTTTGGTTTTTAAATTTAAGAACACTCC---CTTATAGCTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAGGAAGAATTGGTAAACTA
droEle1 scf7180000488451:7735-7943 - T--------------------------------------------------------AGCAACAGGTATCTTTTAGTCGGT-TAACTCAACTAGAGTG-TACTTGTATGGTTTTCAATA---TTTT-TA---------------------------------------------------------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTT------------------CGTGTTGTAGCTGTCGTCTT----------------------------------------------------------------------------------------------------------------------------CCAAATGATCTTCGTTTTTTGAAATTAAAAACGTAATA-------------------------------------------------------------------------------------------------T-TAACAAGTTATT-----T-------TGT-ATCTTTTAAGCCGAACCCTTGCCCCTAATGGATCTTTGCCGAAGAACTATTCGACAGAAA
droRho1 scf7180000760330:221-474 - ACT----CCCTT---------------------------------------TACCTGAGTAACGGGTATCTGATAGTCGGG-GCACCCGACTATAGCG-TTCTCTCTTGTTTTTATTTT---GT------------------------------------------------------AATTCGTCGGTTTCTCGAC--CACTT-------------------------------------TTA---------------------------------------CAAC----AAATTT------------TGACTTTT-----TTTT----GCAATATTTAT-AATTGATTAAATTTATTATAA----------------------------------------------------------------------------------------CA---GAAA---------AGATTCTTTTATATCTTTTTGCTTTTTAAAATTTTTTACTC-TGTTTCTTATCACTGGTGGGGGACAACAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTCAATTATTCATTAACAC
droFic1 scf7180000453932:722129-722273 + G----------------------------------------------------------TAACGGGTATCAGATACTTAGG-GTACTCGACTCTAGCG-TTCTGTCTGGTATTCGCCCA---TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCTCTTACCATCGTAAGAAAACAAGAAAGAAAT-----------------------------------------------------------------------TCGACTATACTAACAAGTATATATATATATATA-------------------------AAATA---AAATAATATTT------------------------------------------------------------------------------
droKik1 scf7180000300172:15045-15136 + TTA----T-------------------------------------------------------AAA--------------------------------------------------T-------------------------------------------------------------------------A--------------------------------------------------------------------------------------AAATATATAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACATTTT-T------T-------TCT-ACCATTTAAGCCGAACCTTTGCCGCTAATGGATCTGTGCCGAAGAACAATTCGACAAAAA
droAna3 scaffold_13266:19212924-19213074 - G----------------------------------------------------------TACCGGCTATCATGTAGTCGGG-AAACTCAAATATAGTCGTCCATTCTTGTTAATCATTC---AATT-TT---------------------------------------------------------GTGAACATTG----------------------------------------------------------------------------------------TATTTGAACCAATCAAGTGTACATTGTGAATCTTATTCAT--TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGATTTGTTTCTTATAT---------------------------------------------------------------------------------------------------------------------------AT------------------------------------TATATATATTTCT
droBip1 scf7180000394712:21607-21823 + G----------------------------------------------------------TACCGGGTATATTATA---GCG-AAACTCGACTATAGCC-GTCTTTTTTGTTTAATTTGA---GT-T--G---------------------------------------------------------GTATACATAAA--CAATCTATACATTTACATTCATACATTACATGCAATTTTTTAT--CAAATGTTATGGACGG----------------------------------------------------AATTTAAAGTTT-------TGAAAAATATTAAA----------------------------------TAATA------------------AACTTTTAAAATGTTTTTTT--------T--------------------CG------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------------AAA-----AAACGTTTTTTTATTTAT-------TTT-ATTTTTTA----------------------------------------------------
dp5 Unknown_group_200:17815-17902 + TTT----CT------------------------------------------------------AAA--------------------------------------------------T-------------------------------------------------------------------------A--------------------------------------------------------------------------------------ATAAAAATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATTT--------T-------TGT-A---TTTAAGCTGAACCCTTGCCCCTAATGGATCTTTGCCGAAGGACTATTCGACAAAAA
droPer2 scaffold_125:78546-78633 + TTT----CT------------------------------------------------------AAA--------------------------------------------------T-------------------------------------------------------------------------A--------------------------------------------------------------------------------------ATAAAAATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATTTTT-------------------TTATTTAAGCTGAACCCTTGCCCCTAATGGATCTTTGCCGAAGGACTATTCGACAAAAA
droWil2 scf2_1100000004558:1252830-1252953 + TCT----ATTT------------------------------------------------------------------------------------------------GATTTCAAATCA----ACT-AT---------------------------------------------------------GTACACAAAAT-----------------------------------------------CAAATGTCTTGAACATAATTTCTTAATATGTTTTTATAAATAA-------------------------------------------ATAATTTTTATTATAAAACTTTAAGTATTTTCA----------------------------------------------------------------------------------------AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-----AAACATTT---------------------------------------------------------------------------------
droVir3 scaffold_12963:14257832-14258022 - TTA----CATTA---------------------------------------ATTTTTTA-------TATTGGCTGGTCGCA-GAGATCAAC----GTT-TATTTATTTGATTT--------------CT---------------------------------------------------------GTT---------------------------------------------------------------------------------CATATCTATATAAGCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTTTCGCTTATATTGATATACACATATATA-------------------------AATT----GATCGC---TTTGT---A-------TTC-ATTTTTACAGCCGAACCTTTGCCATTAATGGATCTTTGTCGAAGGTCAATTCGACAGAAA
droMoj3 scaffold_6680:24684953-24685108 - G---------------------------------------------------------------GGGATCTCGTAGTCGAGTAGTCTCGACTAGAGCT-TTCTTACTTGTTTTTAATTA---ATTT-TT---------------------------------------------------------GACTGGACGG----------------------------------------------------------------------------------------AAT----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATGAAACTTTCAGCATATGATTTACATATTATATTGAATATTTGAGAAATTTA---------------------------------A------------------------AAAAA-----------------------------------------------------------------------TGAAAAATCATTC-ACAATTA
droGri2 scaffold_15203:3562778-3562902 + TTG----TTTTA---------------------------------------AAAATGAATACAAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA----TTTATT------------GTTTTTTTTTTTGTCAT----CCGGAATTTCTTAGCCAATGGTATATATTATTA----------------------------------------------------------------------------------------TA---TAGT---------AGTATGATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAT---T-------TTT-GAAT---------------------------------------------TTTGATTTTAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATC----CCCAATGTCAGAGAACT---------------------------------GGTAACGGGTATCTGATAGTCGGG-GAACTCGACTATAGCA-CTCTGTTTTGTTTTAAATTA---ATTT-CT---------------------------------------------------------GATTACATGAT--CATTG-------------------------------------CGA---------------------------------------AAAG----TACATT------------AGTTATTTAGATGTCGT----ATGGTATTTATTAAAAAACTATATATATTTTTA----------------------------------------------------------------------------------------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA---AAACAATTTCTTAC---C-------TTT-ATCTTTTAAGCTGAACCGTTGCCCCTAATGGATCTTTGCCGAAGAACAATTCGTCAAAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCTTTGCCGAAGAACAATTCGTC.....2716.00600000005001000000
..............................................................................................................................................................................................ACATGAT--CATTG-------------------------------------CGA---------------------------------------AAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200200000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCTTTGCCGAAGA...............1811.00100000000000100000
.........................................................................................................................................................................................................................................................................................................................ATTTAGATGTCGT----ATGGTATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000010000000
...............................................................................GG-GAACTCGACTATAGCA-CTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.00200200000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCTTTGCCGAAGAACAATTCGTCA....2811.00100000000100000000
................................................................................G-GAACTCGACTATAGCA-CTCTGTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCTTTGCCGAAGAACAATTCGT......2611.00100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACCGTTGCCCCTAATGGATCTTT.......................2611.00100000000010000000
.............................................................................CGGG-GAACTCGACTATAGCA-CTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.50100100000000000000
..................................................................TATCTGATAGTCGGG-GAACTCGACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.25500000000500000000
..................................................................TATCTGATAGTCGGG-GAACTCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.15300000000003000000
.......................T---------------------------------GGTAACGGGTATCTGATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.14100000000001000000
................................................................GGTATCTGATAGTCGGG-GAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10200000002000000000
...............................................................GGGTATCTGATAGTCGGG-GAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.10200000000020000000
.......................................................................GATAGTCGGG-GAACTCGACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10201000000001000000
.........................................................GGTAACGGGTATCTGATAGTCGGG-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24140.07100000000001000000
....................................................................TCTGATAGTCGGG-GAACTCGACTAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000010000000000
...........................................................TAACGGGTATCTGATAGTCGGG-GAACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100000000100000000
...................................................................ATCTGATAGTCGGG-GAACTCGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000001000000000
....................................................................TCTGATAGTCGGG-GAACTCGACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000000001000000
...............................................................GGGTATCTGATAGTCGGG-G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000010000000
............................................................AACGGGTATCTGATAGTCGGG-GAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000010000000000
droSec2
ATC----CCCAATGTCAGAAAACTGTTGAAC--TCACATTCGGTTTTCCATTAGCTTGGTAACGGGAATCTGATAGTCGGG-GAACTCGACTATAGCA-CTCTGTTTTGTTTTAAATTA---ATTT-CT---------------------------------------------------------GATTACATGAT--CATTG-------------------------------------CGA---------------------------------------AAAG----TACATT------------AGCTATTTAGATGTCGT----ATGGTATTTATTAAAAAACTATATATATTTTTA----------------------------------------------------------------------------------------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-----AAACAATTTCTTAC---A-------TTT-ATCTTTTAAGCTGAACCGTTGCCCCTAATGGATCTTTGCCGAAGAACAATTCGTCAAAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................ATCTGATAGTCGGG-GAACTCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100
....................................................................TCTGATAGTCGGG-GAACTCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100
....................................................................TCTGATAGTCGGG-GAACTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
dm3
TTTATGCCCCAATGTCAGAAAACTGTTAAACTTTCACATTCGGCTTTCCATTAGCTGAGTAATGGGTATCTGATAGTCGGG-GCACTCGACTATAGCA-CTCTCTTAAGTTTTAAATAA---ATTG-TG---------------------------------------------------------GATTACATGATTACATTG-------------------------------------CGA---------------------------------------AAAG----TACATT------------AATTATTTAGAGTTCGC----ATGACACTTATTAAAAAATTATATATATTTTTA----------------------------------------------------------------------------------------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAC-AAACAATTTCTTAC---T-------TGT-ATCTTTTAAGCCGAACCCTTGCCCCTAATGGATCTTTGCCGAAGAACAATTCGTCAAAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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......................................................................................TCGACTATAGCA-CTCTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1870.8660000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TGAGTAATGGGTATCTGATAGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23180.72130000000000000000000000100000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000202020000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000010000000
...................................................TAGCTGAGTAATGGGTATCTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22170.71120000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010000002000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000100000000000000000000
...................................................TAGCTGAGTAATGGGTATCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21180.67120000000000000000000000000000000000000000000000000010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000004000010000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000000000000000000000010000000000000000000000000000000100000000100000000000000000000000000
.................................................................GTATCTGATAGTCGGG-GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................GTATCTGATAGTCGGG-GCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................GGTATCTGATAGTCGGG-GCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................................................GAGTAATGGGTATCTGATAGTCGGG-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25100.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000130000000000000000000000000
................................................................GGTATCTGATAGTCGGG-GCACTCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................GGGTATCTGATAGTCGGG-GCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TATCTGATAGTCGGG-GCACTCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................GGTATCTGATAGTCGGG-GCACTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................CTGATAGTCGGG-GCACTCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..................................................................TATCTGATAGTCGGG-GCACTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................GGTATCTGATAGTCGGG-GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
....................................................AGCTGAGTAATGGGTATCTGATAGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26130.4660000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TGAGTAATGGGTATCTGATAGTCGGG-G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2770.4330000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................AATGGGTATCTGATAGTCGGG-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.3770000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000200000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000100100000
.......................................................TGAGTAATGGGTATCTGATAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100002110000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.....................................................GCTGAGTAATGGGTATCTGATAGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25130.3140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
......................................................CTGAGTAATGGGTATCTGATAGTCGGG-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2780.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................GGGTATCTGATAGTCGGG-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TATCTGATAGTCGGG-GCACTCGACTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.2510000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................AGCTGAGTAATGGGTATCTGATAGTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27120.2530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000002000000000000000000000000
.....................................................GCTGAGTAATGGGTATCTGATAGTCGGG-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2880.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................GTAATGGGTATCTGATAGTCGGG-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23180.2240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...................................................TAGCTGAGTAATGGGTATCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20190.2140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000000000100000000
........................................................GAGTAATGGGTATCTGATAGTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................................TAATGGGTATCTGATAGTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................TCTGATAGTCGGG-GCACTCGACTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.2010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TAGCTGAGTAATGGGTATCTGATAGTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................TAATGGGTATCTGATAGTCGGG-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22190.1630000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................TGAGTAATGGGTATCTGATAGTCGGT-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................GAGTAATGGGTATCTGATAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000100000000
.......................................................TGAGTAATGGGTATCTGATAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TGAGTAATGGGTATCTGATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................AGCTGAGTAATGGGTATCTGATAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25140.1420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000
.......................................................TGAGTAATGGGTATCTGATAGTCGGC-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26140.1420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................CTGAGTAATGGGTATCTGATAGTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2680.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................AGCTGAGTAATGGGTATCTGATAGTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2880.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..................................................................TATCTGATAGTCGGG-GCACTCGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2380.1310000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TAGCTGAGTAATGGGTATCTGATAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25170.1220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................TAGCTGAGTAATGGGTATCTGATAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26180.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................GCTGAGTAATGGGTATCTGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TAGCTGAGTAATGGGTATCTGATAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...................................................TAGCTGAGTAATGGGTATCTGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
droEre2
TTC----CACTA---------------------------------------TCTCTGAATAACGGATATCTGATAGTCGAG-GAACTCGACTATAGCA-TTCTATCTTGTTTTTAAATA---ATTT-CT---------------------------------------------------------GTATATAAGAT--CATTG-------------------------------------TAA---------------------------------------AAGG----TACATTT-----------AAGCATTTAGAGTTTGT----ACAGCATTTATTAAA-AATTATAT-------------------------------------------TATAT-------------------T--------A--------------------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA-CAAAACAATTT-TTAC---T-------TGT-ATCTTTTAAGCTGAACCTTTGCCTCTAATGGATCTTTGCCGAAGAACAATTCGTCAAAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGATCTTTGCCGAAGAAC.............2211.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCTTTGCCGAAGAACAATTC........2511.0010000100
.....................................................................................CTCGACTATAGCA-TTCTATCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000010
droYak3
ACC----GCCAA-----------------AAACTGTCCTTCGCACTTACACTAGCTGAGTAACGGGTATCATATAGTCGGG-GAACTCGACTATAGCG-TTCTCTCTTGTTTGCGACTATAAATAT-CAGTATTTTGATCAGAACATTCGAAATATTGGTCAGAATATGGAATGTCATACTTCGTT------------------------------------------------------------------------------------------------------------------------------------GAGTTCGT----A--------ATTAA-------------------------------------------------------------------------------------------ATTT-----------------------------------------------------------------------------------------------------------CCAATCGAACTGTGTTTTCAGA-----------------------------------------------------------------------------------------------------------AAAAAAT-T-AAAATTTTTCAA---ATTTTTTTTGCAATTTTTGATGATGATA----------TTTGGATTTTTGCAGAAAATCGAT----------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................TCGT----A--------ATTAA-------------------------------------------------------------------------------------------ATTT-----------------------------------------------------------------------------------------------------------CCAATCGAACTG......................................................................................................................................................................................................................26202.4549049000000000
................................................CACTAGCTGAGTAACGGGTATCATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.8517014300000000
.........................................................................TAGTCGGG-GAACTCGACTATAGCG-TTCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.7515000000000015
................................CTGTCCTTCGCACTTACACTAGCTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.5010010000000000
...............................................................................................................................CAGTATTTTGATCAGAACATTCGAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.15303000000000
.........CAA-----------------AAACTGTCCTTCGCACTTACACTAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.10202000000000
........................................................GAGTAACGGGTATCATATAGTCGGG-G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10202000000000
................................................CACTAGCTGAGTAACGGGTATCATATAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.10200200000000
.............................AAACTGTCCTTCGCACTTACACTAGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100100000000
........................................................GAGTAACGGGTATCATATAGTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100100000000
.....................................................................................................................................TTTGATCAGAACATTCGAAATATTGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000000000
............................................................................................................................................................................TGTCATACTTCGTT------------------------------------------------------------------------------------------------------------------------------------GAGTTCGT----A--------AT...............................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
.....................................................................................................................................................................TATGGAATGTCATACTTCGTT------------------------------------------------------------------------------------------------------------------------------------GAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
................................CTGTCCTTCGCACTTACACTAGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
......................................................................................................................................TTGATCAGAACATTCGAAATATTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
.....................................................................................................................................................................TATGGAATGTCATACTTCGTT------------------------------------------------------------------------------------------------------------------------------------GA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100100000000
.......................................................TGAGTAACGGGTATCATATAGTCGGG-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100010000000
..............................................................CGGGTATCATATAGTCGGG-GAACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
.................................TGTCCTTCGCACTTACACTAGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100100000000
...................................................TAGCTGAGTAACGGGTATCATATAGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100010000000
..................................................................TATCATATAGTCGGG-GAACTCGACTAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000000000
.....................................................................................CTCGACTATAGCG-TTCTCTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100001000000
.......................................................TGAGTAACGGGTATCATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05101000000000
....................................................................TCATATAGTCGGG-GAACTCGACTAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
.....................................................................................................................TATAAATAT-CAGTATTTTGATCAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
......................................................................................................................................TTGATCAGAACATTCGAAATATTGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
..................................................CTAGCTGAGTAACGGGTATCATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100100000000
droEug1
AAA----C-------------------------------------------------AGTAACGGGTATCTTATAGTCGCG-GCACTCGACTATAGCG-TTTCCTCTTGTTTTAACTTA---AACTTAT---------------------------------------------------------GG-T-------------G-------------------------------------CAA---------------------------------------GAAT----T----T------------AATTATATACA---T--ATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTATATACATATATATATATATATATATATATATCAGTAAAAATTTCATTCTCTAGGT-------------------------------TAC-A--TTTTTATAT---CAC---CTGCTCATATA-TTCCGCCTAAGTCCGATTCCTTGACGTSizeHit CountTotal NormTotal
No Reads
droBia1
TCC----CTTA-----------------------------------------AGTTGAGTAACGAGTACCTGATAGTCGAG-GCACTCTACTATAACG-TTCTTCCTTGTTTTTATATA---TA-----------------------------------------------------------------TATATATT--CGTTT-------------------------------------TGG---------------------------------------GAAC----T---------------------GTTAGGAACTCAC----ATGACCCA-------GGATTAC-----------AAACATGTACTTCTTC---AAGGTAAAATTGCTTTATTCAGCT---------------T--------T--------------------CT-----------------------------------------------------------------------------------------------------------------A-------------AAAA-------------------------------------------------------------------------------------------------T-TAGCGATTTTTT--------------TT-AAAT-----------------------TTTAATCTCTGCCTAAAAAATATTCTAAAAAAASizeHit CountTotal NormTotal
No Reads
droTak1
ACT----CCCTT---------------------------------------TACCTGAGTAACGGGTATCTGATAGTCGGA-GCACCCGACTATAACG-TTCTATCTTGTTTTATTTTA---TT-T-TT---------------------------------------------------------GTT-----GA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACTTGTACATCACC---AT------------------AGCGTTTTAGTTGATATCATGTTTTGCTTTGAAATTTAACATCGGACTTTAACAGAAATATGTTCAAAAAAT-GTCATTAACTCTTTGGTTTTTAAATTTAAGAACACTCC---CTTATAGCTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAGGAAGAATTGGTAAACTASizeHit CountTotal NormTotal
No Reads
droEle1
T--------------------------------------------------------AGCAACAGGTATCTTTTAGTCGGT-TAACTCAACTAGAGTG-TACTTGTATGGTTTTCAATA---TTTT-TA---------------------------------------------------------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTT------------------CGTGTTGTAGCTGTCGTCTT----------------------------------------------------------------------------------------------------------------------------CCAAATGATCTTCGTTTTTTGAAATTAAAAACGTAATA-------------------------------------------------------------------------------------------------T-TAACAAGTTATT-----T-------TGT-ATCTTTTAAGCCGAACCCTTGCCCCTAATGGATCTTTGCCGAAGAACTATTCGACAGAAASizeHit CountTotal NormTotal
No Reads
droRho1
ACT----CCCTT---------------------------------------TACCTGAGTAACGGGTATCTGATAGTCGGG-GCACCCGACTATAGCG-TTCTCTCTTGTTTTTATTTT---GT------------------------------------------------------AATTCGTCGGTTTCTCGAC--CACTT-------------------------------------TTA---------------------------------------CAAC----AAATTT------------TGACTTTT-----TTTT----GCAATATTTAT-AATTGATTAAATTTATTATAA----------------------------------------------------------------------------------------CA---GAAA---------AGATTCTTTTATATCTTTTTGCTTTTTAAAATTTTTTACTC-TGTTTCTTATCACTGGTGGGGGACAACAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTCAATTATTCATTAACACSizeHit CountTotal NormTotal
No Reads
droFic1
G----------------------------------------------------------TAACGGGTATCAGATACTTAGG-GTACTCGACTCTAGCG-TTCTGTCTGGTATTCGCCCA---TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCTCTTACCATCGTAAGAAAACAAGAAAGAAAT-----------------------------------------------------------------------TCGACTATACTAACAAGTATATATATATATATA-------------------------AAATA---AAATAATATTT------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TTA----T-------------------------------------------------------AAA--------------------------------------------------T-------------------------------------------------------------------------A--------------------------------------------------------------------------------------AAATATATAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACATTTT-T------T-------TCT-ACCATTTAAGCCGAACCTTTGCCGCTAATGGATCTGTGCCGAAGAACAATTCGACAAAAASizeHit CountTotal NormTotal
No Reads
droAna3
G----------------------------------------------------------TACCGGCTATCATGTAGTCGGG-AAACTCAAATATAGTCGTCCATTCTTGTTAATCATTC---AATT-TT---------------------------------------------------------GTGAACATTG----------------------------------------------------------------------------------------TATTTGAACCAATCAAGTGTACATTGTGAATCTTATTCAT--TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGATTTGTTTCTTATAT---------------------------------------------------------------------------------------------------------------------------AT------------------------------------TATATATATTTCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
G----------------------------------------------------------TACCGGGTATATTATA---GCG-AAACTCGACTATAGCC-GTCTTTTTTGTTTAATTTGA---GT-T--G---------------------------------------------------------GTATACATAAA--CAATCTATACATTTACATTCATACATTACATGCAATTTTTTAT--CAAATGTTATGGACGG----------------------------------------------------AATTTAAAGTTT-------TGAAAAATATTAAA----------------------------------TAATA------------------AACTTTTAAAATGTTTTTTT--------T--------------------CG------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------------AAA-----AAACGTTTTTTTATTTAT-------TTT-ATTTTTTA----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
TTT----CT------------------------------------------------------AAA--------------------------------------------------T-------------------------------------------------------------------------A--------------------------------------------------------------------------------------ATAAAAATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATTT--------T-------TGT-A---TTTAAGCTGAACCCTTGCCCCTAATGGATCTTTGCCGAAGGACTATTCGACAAAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCCTAATGGATCTTTGCCG...................2111.0010100000000
droPer2
TTT----CT------------------------------------------------------AAA--------------------------------------------------T-------------------------------------------------------------------------A--------------------------------------------------------------------------------------ATAAAAATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATTTTT-------------------TTATTTAAGCTGAACCCTTGCCCCTAATGGATCTTTGCCGAAGGACTATTCGACAAAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATCTTTGCCGAAGGACT............2213.003300000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCTGAACCCTTGCCCCTA.................................2112.002200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGCCGAAGGACTATTCG.......2011.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCCCCTAATGGATCTTTGCCG...................2411.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCGAAGGACTATTCGACA....2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGAACCCTTGCCCCT..................................1911.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCTTTGCCGAAGGA..............1911.001010000
droWil2
TCT----ATTT------------------------------------------------------------------------------------------------GATTTCAAATCA----ACT-AT---------------------------------------------------------GTACACAAAAT-----------------------------------------------CAAATGTCTTGAACATAATTTCTTAATATGTTTTTATAAATAA-------------------------------------------ATAATTTTTATTATAAAACTTTAAGTATTTTCA----------------------------------------------------------------------------------------AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-----AAACATTT---------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TTA----CATTA---------------------------------------ATTTTTTA-------TATTGGCTGGTCGCA-GAGATCAAC----GTT-TATTTATTTGATTT--------------CT---------------------------------------------------------GTT---------------------------------------------------------------------------------CATATCTATATAAGCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTTTCGCTTATATTGATATACACATATATA-------------------------AATT----GATCGC---TTTGT---A-------TTC-ATTTTTACAGCCGAACCTTTGCCATTAATGGATCTTTGTCGAAGGTCAATTCGACAGAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATTAATGGATCTTTGTCGAAGGT..............2711.001000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTTTGCCATTAATGGATCTTTGT.....................2711.001000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATA-------------------------AATT----GATCGC---TTTGT---A-------T...............................................................2311.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATTAATGGATCTTTGTC....................2111.001000000000000010000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-ATTTTTACAGCCGAACCTTTGCCAT...................................2711.001000000000000000000000000001000000000000000000000000000000000000
droMoj3
G---------------------------------------------------------------GGGATCTCGTAGTCGAGTAGTCTCGACTAGAGCT-TTCTTACTTGTTTTTAATTA---ATTT-TT---------------------------------------------------------GACTGGACGG----------------------------------------------------------------------------------------AAT----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATGAAACTTTCAGCATATGATTTACATATTATATTGAATATTTGAGAAATTTA---------------------------------A------------------------AAAAA-----------------------------------------------------------------------TGAAAAATCATTC-ACAATTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................T----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATGAAACTTTCAGCATATGATT..........................................................................................................................................................................................26111.91211500060
...................................................................................................................................................................................................................................................................................................T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATGAAACTTTCAGCATATGATT..........................................................................................................................................................................................25110.455500000
.............................................................................................................................................................................................................................................................................................AT----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATGAAACTTTCAGCATATGATT..........................................................................................................................................................................................27110.091100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGAAACTTTCAGCATATGATT..........................................................................................................................................................................................24110.091100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAACTTTCAGCATATGATT..........................................................................................................................................................................................23120.081100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACATATTATATTGAATAT.......................................................................................................................................................................21130.081100000
droGri2
TTG----TTTTA---------------------------------------AAAATGAATACAAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA----TTTATT------------GTTTTTTTTTTTGTCAT----CCGGAATTTCTTAGCCAATGGTATATATTATTA----------------------------------------------------------------------------------------TA---TAGT---------AGTATGATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAT---T-------TTT-GAAT---------------------------------------------TTTGATTTTAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 05:14 PM