dsi_28166

exon [3l_19785495_19786084_-]; CDS [3l_19785495_19786084_-]; CDS [3l_19784853_19785362_-]; exon [3l_19784726_19785362_-]; intron [3l_19785363_19785494_-]

##################################################------------------------------------------------------------------------------------------------------------------------------------################################################## CCACCGGACTCGTTTTGCAGTCGGGTAAATGCACTGCAAACGGACAAACTGTGAGTTACCAATTGCAAACCTACTATATCCCTGCCTAGATCCCAAAACACTTGACAAGTCCCTTAACCAAATCCAATCATATGGAAAATTACCTGCATCCTTTAGTGAATGTGACTTACTCCTTTCCGCAGGCATACAGCGTGCTCGCCAATCAATGTACCTACGAAAGTACCTCCGTCTG ************************************************(((((((((.....(((...............)))..............((((...))))............((((......))))..........(((......)))...)))))))))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	GSM343915 embryo	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs
..........CGTTTTGCAGTCGGGTAAATGCACT.....................................................................................................................................................................................................	25	0	1	4.00	4	4	0	0	0	0	0
..........................AAATGCACTGCAAACGGACAAACTGC....................................................................................................................................................................................	26	1	1	4.00	4	4	0	0	0	0	0
..........................AAATGCACTGCAAACGGAC...........................................................................................................................................................................................	19	0	1	3.00	3	3	0	0	0	0	0
...............................CACTGCAAACGGACAAACT......................................................................................................................................................................................	19	0	1	3.00	3	3	0	0	0	0	0
...................GTCGGGTAAATGCACTGCAAAC...............................................................................................................................................................................................	22	0	1	3.00	3	3	0	0	0	0	0
........................GTAAATGCACTGCAAACGGACAAACTGC....................................................................................................................................................................................	28	1	1	3.00	3	3	0	0	0	0	0
..........CGTTTTGCAGTCGGGTAAATGCACTGC...................................................................................................................................................................................................	27	0	1	2.00	2	2	0	0	0	0	0
..............................GCACTCCAAACGGACAAACTGC....................................................................................................................................................................................	22	2	1	2.00	2	2	0	0	0	0	0
..............................GCACTGCAAACGGACAAACTGC....................................................................................................................................................................................	22	1	1	2.00	2	2	0	0	0	0	0
...................GTCGGGTAAATGCACTGC...................................................................................................................................................................................................	18	0	1	2.00	2	2	0	0	0	0	0
................................ACTGCAAACGGACAAACTGC....................................................................................................................................................................................	20	1	1	2.00	2	2	0	0	0	0	0
CCACCGGACTCGTTTTGC......................................................................................................................................................................................................................	18	0	1	2.00	2	2	0	0	0	0	0
...........................AATGCACTGCAAACGGAC...........................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0
.CACCGGACTCGTTTTGCAGC...................................................................................................................................................................................................................	20	1	1	1.00	1	1	0	0	0	0	0
.CACCGGACTCGTTTTGCG.....................................................................................................................................................................................................................	18	1	1	1.00	1	1	0	0	0	0	0
........................................................TACCAAGTTCAAGCCTACTAT...........................................................................................................................................................	21	3	1	1.00	1	0	0	1	0	0	0
..................AGTCGGGTAAATGCACTGCAAACGGAC...........................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0
..................AGTCGGTTATATGCACTGCAAACGGAC...........................................................................................................................................................................................	27	2	1	1.00	1	1	0	0	0	0	0
..........CGTTTTGCAGTCGGGTAA............................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0
........................GTAAATGCACTGCAAACGGAC...........................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0
..................AGTCGGGTAAATGCACTGC...................................................................................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0
..........................AAATGCACTGCAAACGGACAAACT......................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................GCATACAGCGTGCTCGCCAATC............................	22	0	1	1.00	1	0	1	0	0	0	0
.......................GGTAAATGCACTGCAAACGGACAAACT......................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0
.................................CTGCAAACGGACAAACTGC....................................................................................................................................................................................	19	1	1	1.00	1	1	0	0	0	0	0
..............................GCACTGCAAACGGACAAACT......................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0
........CTCGTTTTGCAGTCGGGGAAATGCAC......................................................................................................................................................................................................	26	1	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................ACCTACGAAAGTATCTCCGTC..	21	1	1	1.00	1	0	1	0	0	0	0
............................ATGCACTGCAAACGGACAAACTGC....................................................................................................................................................................................	24	1	1	1.00	1	1	0	0	0	0	0
..............................GCACTGCAAACGGACAAACTG.....................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................CAATGTACCTACGAAAGT...........	18	0	1	1.00	1	0	1	0	0	0	0
..........CGTTTTGCAGTCGGGTAAATGCACG.....................................................................................................................................................................................................	25	1	1	1.00	1	1	0	0	0	0	0
..........CGTTTTGCAGTCGGGTAAAT..........................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0
..............................GCACTGCAAACGGACAAAC.......................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0
........CTCGTTTTGCAGTCGGGTAAATGCACT.....................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0
.............................................................................ATCCCTGCGTCGATCCCA.........................................................................................................................................	18	2	5	0.20	1	0	0	0	1	0	0
........................................................TACCAAGTTCAAGCCTACTA............................................................................................................................................................	20	3	7	0.14	1	0	0	1	0	0	0
............................ATGCACTGCTCACGGAC...........................................................................................................................................................................................	17	2	11	0.09	1	0	0	0	0	1	0
....................................................................................CCTAGATCCCTAACCA....................................................................................................................................	16	2	19	0.05	1	0	0	0	0	0	1

GGTGGCCTGAGCAAAACGTCAGCCCATTTACGTGACGTTTGCCTGTTTGACACTCAATGGTTAACGTTTGGATGATATAGGGACGGATCTAGGGTTTTGTGAACTGTTCAGGGAATTGGTTTAGGTTAGTATACCTTTTAATGGACGTAGGAAATCACTTACACTGAATGAGGAAAGGCGTCCGTATGTCGCACGAGCGGTTAGTTACATGGATGCTTTCATGGAGGCAGAC ************************************************(((((((((.....(((...............)))..............((((...))))............((((......))))..........(((......)))...)))))))))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
........................................................ATGGTTTAAGTTCGGATGATA...........................................................................................................................................................	21	3	4	0.50	2	1	1	0
......................................................................................................ACGGTTCAAGGAATTGGT................................................................................................................	18	2	5	0.40	2	1	0	1
...................................................ACTCAATGGGCAACGTT....................................................................................................................................................................	17	2	20	0.05	1	0	1	0

Species	Coordinate	ID	Alignment
droSim2	3l:19785313-19785544 -	dsi_28166	CCACCG---GACTCGTTTTGCAGTC--GGGTAAATGCACT------GCAAACGGACAAACTGTGAGTTACCAATTGCAAA----------------------CCTACTATATCCCTGCCTAGAT-------CCCAAAAC-ACTTGACAAGTCCCTTAACCAA--------------------------------ATCCAATCATAT------------------------------------------------------------------------------GGAAAATTACCTGCATCCTTTAGTGAATGTGACTTACTCCTTTCCGCAGGCATACAGCGTGCTCGCCAATCAATGTACCTACGAAAGTACCTCCGTCTG
droSec2	scaffold_11:105891-106122 -		CCACCG---GACTCGTTTTGCAGTC--GGGTAAATGCTCT------ACAAACGAACAAACTGTGAGTTATCAATTGCAAA----------------------CCTACTACATCCCTGCCTAGAT-------CCCAAAAC-ACTTGACAAGTCCCTTAACCAA--------------------------------ATCCAATCATAT------------------------------------------------------------------------------GGAAAATTACCTGCATCCTTTAGTGAATGTGACTTACTCCTTTCCGCAGGCATACAGCGTGCTCGCCAATCAATGTACCTACGAAAGTGCCTCCGTCTG
dm3	chr3L:20195761-20196063 -		CCACCG---GACTCGTTTTGCAGTC--GGGTAAATGCTCT------GCAAACAATCAAACTGTGAGTTACCAATTGCAAA----------------------CCTACTAAATCCCTGCCTAGAT-------CCCAAAAG-ACATGACAAGTCCGTTAACCAAATCTTTACAATTTCTTACATCCTTGATATGAAATCCAATCATATGGAAAGTTAACGAACTT-TCATAGGCACCTCGATCATACTGGAC-----A---------------------------------ATTACCTGCATCCTTTAGTGAATGTGATTTACTTCTTTCCGCAGGCATACAACGTGCTCGCCAATCAATGTACCTACGAAAGTGCCTCCGTCTG
droEre2	scaffold_4784:19924757-19925065 -		CCACTG---GAATTGTTTTGCACAC--GTCTAAATGCGAT------TTGCAGTCACAAACTGTGAGTTACCAATTGCAAG----------------------CGTACAGAATCTAATC-TA-AT-------CCCAAAACCACATTGC---TT---------CGACTTTACATTTACCTCGAGCATTTACATGTGAATG-TC---------CTACATGCTAATC-CTCTAGATACTCGTACTCCGCTTGCA-----CAGGCCCATCGATCATAATACATAA----TGCGAACCAATTGTATCCTTAAGTGTACGTGATTTACTCTTTTCCGCAGGCATTCAACGTACTCACCGGAGAATGTACCTACGAAACCCCCAATGTCTG
droYak3	v2_chrUn_1620:64-171 +		CGATCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA------------------------------------------------------------------------------TGCATATCCTTTGTATCCTTTAGTGTATGTGACTCACTCTCTTTCGCAGATATACAACGCGCTCACCGGTCAATGTGCCTACTCAAGTACCGGCGCCTG
droEug1	scf7180000409711:5754145-5754197 +		CCTCTG---GCATCTTTTTACATAC--TGGAACATGCTCT------GG---TAAACAAACTGTAAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302193:2979043-2979101 -		TTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAGGTCTATAACGCTGCCACCCAACAGTGTACCTACAACACGACTTCCGTGTG
droTak1	scf7180000415868:159600-159661 -		GCACTG---GCGTTTA--TGCATTCAGTGGAAAGTGTGCATCAACCACAACAAAGCAGAATGTGAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491193:4516839-4516848 -		CCACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTG
droRho1	scf7180000765991:5597-5649 -		C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCATTCAATCCTCAAGCCCAGAACTGCGGCTATAAAACCGCTGCCATATG
droFic1	scf7180000454113:2105172-2105232 +		CCTCCG---GCGTTTACCTCGAGAA--GGGTGAATGCTCC------ACCGACAAACAGACTGTAAGTTACCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302441:2939044-2939335 -		CCAGCACTGGTGTCACCTTGATGAC--CGGCACTTGCACG------GCGAATTCCAAGACTGTGAGTAATCTACCATTTTTTAAATTAAGACTTGAGGGGAGTAGATAGATTCAAGTT-TA-ATACGATGTCTCAAACA----------------------------------------TTTTGTCGA-----------TT---------TACCAAACCACTTACCCTAAAGTATGCTACTCTACTTAGATGATATTATCCT-------------TTAGC----TACGATCAAACTGGGTCACTAATTGATCTTGC----CTTCCTCTGATAGGCCTTCAACGTTAACACCGGAAATTGCGACTACGTCTCCACGAGCGTTTG
droAna3	scaffold_13337:6326635-6326783 -		CGACCACTAG--------------------CACGTGTCCC------AC---TCCAACTTCTGTAAGTAATA--------------------------------------------------------------------------------------------ATTTTATAATTGAGTATAT-----T-----------TT---------TGTAAATCAATTC-CTCCGATT---------------------------------------------------------------------------------------ACGTTTAATTACAGTGTTTCAACGTTCAAAAGCAAATGTGTGACTACACGGGACCTACTGTATG
droBip1	scf7180000396709:68175-68345 -		GCTGGAAA--AGCAGACCCAAGCAC--TGGCGAGTGTTCA------GG---TGACACTACAGTGAGTAAAAA-------------------------------------------------------------------------------------------ACTTAAGAATTGAGTATTTCCCAGA-----------TT---------TATGAATCAATTC-CTCCAAAT---------------------------------------------------------------------------------------TCATTGAATTACAGAGTTTCAACGTGCAGAAGCAAATTTGTGACTACTCGACCAATAATGTATG
dp5	XR_group6:2065760-2065904 -		GGCACGCT-----------TCAGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGTGAGATC-CCGCGGATCCCTGCACCTTGCTTGAG-----C------------------------ACTG---------TACTTA--------------TTCAATGCCCCTATTTTCAGGCATACAACGTGGAAACTGGCGAATGTGTGTACTTCAACGACAATGTGTG
droPer2	scaffold_9:358887-359031 -		GGCACGCT-----------TCAGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGTGAGATC-CCGCGGATCCCTGCACCTTGCTTGAG-----C------------------------ACTG---------TACTTA--------------TTCAATGCCCCTATTTTCAGGCATACAACGTGGAAACTGGCGAATGTGTGTACGCCAACGACAATGTGTG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CCACCG---GACTCGTTTTGCAGTC--GGGTAAATGCACT------GCAAACGGACAAACTGTGAGTTACCAATTGCAAA----------------------CCTACTATATCCCTGCCTAGAT-------CCCAAAAC-ACTTGACAAGTCCCTTAACCAA--------------------------------ATCCAATCATAT------------------------------------------------------------------------------GGAAAATTACCTGCATCCTTTAGTGAATGTGACTTACTCCTTTCCGCAGGCATACAGCGTGCTCGCCAATCAATGTACCTACGAAAGTACCTCCGTCTG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............CGTTTTGCAGTC--GGGTAAATGCACT------.................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................AAATGCACT------GCAAACGGACAAACTGC................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................AAATGCACT------GCAAACGGAC.......................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................CACT------GCAAACGGACAAACT..................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GTC--GGGTAAATGCACT------GCAAAC...........................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................GTAAATGCACT------GCAAACGGACAAACTGC................................................................................................................................................................................................................................................................................................................................	28	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CGTTTTGCAGTC--GGGTAAATGCACT------GC...............................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................GCACT------GCAAACGGACAAACTGC................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GTC--GGGTAAATGCACT------GC...............................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................ACT------GCAAACGGACAAACTGC................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CCACCG---GACTCGTTTTGC..........................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................AATGCACT------GCAAACGGAC.......................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CACCG---GACTCGTTTTGCAGC.......................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CACCG---GACTCGTTTTGCG.........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AGTC--GGGTAAATGCACT------GCAAACGGAC.......................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CGTTTTGCAGTC--GGGTAA..............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................GTAAATGCACT------GCAAACGGAC.......................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AGTC--GGGTAAATGCACT------GC...............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................AAATGCACT------GCAAACGGACAAACT..................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GCATACAGCGTGCTCGCCAATC............................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
............................GGTAAATGCACT------GCAAACGGACAAACT..................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CT------GCAAACGGACAAACTGC................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................GCACT------GCAAACGGACAAACT..................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................ATGCACT------GCAAACGGACAAACTGC................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................GCACT------GCAAACGGACAAACTG.................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................CAATGTACCTACGAAAGT...........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............CGTTTTGCAGTC--GGGTAAATGCACG------.................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CGTTTTGCAGTC--GGGTAAAT............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................GCACT------GCAAACGGACAAAC...................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CTCGTTTTGCAGTC--GGGTAAATGCACT------.................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CCACCG---GACTCGTTTTGCAGTC--GGGTAAATGCTCT------ACAAACGAACAAACTGTGAGTTATCAATTGCAAA----------------------CCTACTACATCCCTGCCTAGAT-------CCCAAAAC-ACTTGACAAGTCCCTTAACCAA--------------------------------ATCCAATCATAT------------------------------------------------------------------------------GGAAAATTACCTGCATCCTTTAGTGAATGTGACTTACTCCTTTCCGCAGGCATACAGCGTGCTCGCCAATCAATGTACCTACGAAAGTGCCTCCGTCTG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............CGTTTTGCAGTC--GGGTAAATGCT.........................................................................................................................................................................................................................................................................................................................................................	23	1	20.00	20	0	0	19	1
.............CGTTTTGCAGTC--GGGTAAAT............................................................................................................................................................................................................................................................................................................................................................	20	1	8.00	8	0	0	8	0
........................................................................................................................................................................................................................................................................................................................................................................ACCTACGAAAGTGCCTCCGT...	20	1	7.00	7	0	0	7	0
...............................................................................................................................................................................................................................................................................................................................................ATACAGCGTGCTCGCCAATC............................	20	1	6.00	6	0	0	6	0
.............CGTTTTGCAGTC--GGGTAAATG...........................................................................................................................................................................................................................................................................................................................................................	21	1	6.00	6	0	0	6	0
...........CTCGTTTTGCAGTC--GGGT................................................................................................................................................................................................................................................................................................................................................................	18	1	5.00	5	0	0	5	0
......................................................................................................................................................................................................................................................................................................................................................................GTACCTACGAAAGTGCCTCCGT...	22	1	5.00	5	0	0	5	0
.............CGTTTTGCAGTC--GGGTAA..............................................................................................................................................................................................................................................................................................................................................................	18	1	5.00	5	0	0	5	0
.............CGTTTTGCAGTC--GGGTAAATGCTCT------AC...............................................................................................................................................................................................................................................................................................................................................	27	1	5.00	5	0	0	5	0
...........CTCGTTTTGCAGTC--GGGTAAATGCT.........................................................................................................................................................................................................................................................................................................................................................	25	1	5.00	5	0	0	5	0
...............................................................................................................................................................................................................................................................................................................................................ATACAGCGTGCTCGCCAATCAAT.........................	23	1	4.00	4	0	0	4	0
......................................................................................................................................................................................................................................................................................................................................................................GTACCTACGAAAGTGCCTCCGTCT.	24	1	4.00	4	0	0	4	0
.............................................................................................................................................................................................................................................................................................................................................GCATACAGCGTGCTCGCCA...............................	19	1	4.00	4	0	0	4	0
..............GTTTTGCAGTC--GGGTAAAT............................................................................................................................................................................................................................................................................................................................................................	19	1	4.00	4	0	0	4	0
CCACCG---GACTCGTTTTGC..........................................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	4	0
......................................CT------ACAAACGAACAAACTGC................................................................................................................................................................................................................................................................................................................................	19	1	4.00	4	0	0	4	0
..............GTTTTGCAGTC--GGGTAAATGCTCT------A................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	4	0
.CACCG---GACTCGTTTTGCAGTC--....................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	3	0
.............CGTTTTGCAGTC--GGGTAAATGC..........................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	3	0
..............GTTTTGCAGTC--GGGTAAATG...........................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	3	0
...........CTCGTTTTGCAGTC--GGGTAA..............................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	3	0
......................................................................................................................................................................................................................................................................................................................................................GTGCTCGCCAATCAATGT.......................	18	1	3.00	3	0	0	3	0
...................................................................................................................................................................................................................................................................................................................................................................AATGTACCTACGAAAGTGCCTCCGT...	25	1	3.00	3	0	0	3	0
....................................................................................................................................................................................................................................................................................................................................................................ATGTACCTACGAAAGTGCCTCCGT...	24	1	3.00	3	0	0	3	0
...............................................................................................................................................................................................................................................................................................................................................ATACAGCGTGCTCGCCAAT.............................	19	1	3.00	3	0	0	3	0
..................TGCAGTC--GGGTAAATGCT.........................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	3	0
......................................................................................................................................................................................................................................................................................................................................................................GTACCTACGAAAGTGCCTCCGTC..	23	1	3.00	3	0	0	3	0
..............GTTTTGCAGTC--GGGTAAATGCTCT------.................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	3	0
..ACCG---GACTCGTTTTGCAGT.......................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	3	0
...........................................................................................................................................................................................................................................................................................................................................................CGCCAATCAATGTACCTACGAAAGTG..........	26	1	3.00	3	0	0	3	0
.............CGTTTTGCAGTC--GGGTAAA.............................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0
.............CGTTTTGCAGTC--GGGTAAATGCTCT------.................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0
...........................................................................................................................................................................................................................................................................................................................................................CGCCAATCAATGTACCTACGAAAGT...........	25	1	2.00	2	0	0	2	0
..............GTTTTGCAGTC--GGGTAAA.............................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0
...........CTCGTTTTGCAGTC--GGGTAAAT............................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0
..........................................................................................................................................................................................................................................................................................................................................................................CTACGAAAGTGCCTCCGT...	18	1	2.00	2	0	0	2	0
...................................................................................................................................................................................................................................................................................................................................................................AATGTACCTACGAAAGTGCCTC......	22	1	2.00	2	0	0	2	0
...............................................................................................................................................................................................................................................................................................................................................ATACAGCGTGCTCGCCAATCAATGT.......................	25	1	2.00	2	0	0	2	0
..................................................................................................................................................................................................................................................................................................................................................................CAATGTACCTACGAAAGT...........	18	1	2.00	2	0	0	2	0
.............................................................................................................................................................................................................................................................................................................................................GCATACAGCGTGCTCGCCAATCAAT.........................	25	1	2.00	2	0	0	2	0
....................................................................................................................................................................................................................................................................................................................................................................ATGTACCTACGAAAGTGC.........	18	1	2.00	2	0	0	2	0
..................................................................................................................................................................................................................................................................................................................................................................CAATGTACCTACGAAAGTGCCTCCGT...	26	1	2.00	2	0	0	2	0
..........................................................................................................................................................................................................................................................................................................................................................................CTACGAAAGTGCCTCCGTCT.	20	1	2.00	2	0	0	2	0
...................................GCTCT------ACAAACGAACAAACTGCAT..............................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	2	0
..........ACTCGTTTTGCAGTC--GGGT................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0
................TTTGCAGTC--GGGTAAATGCTCT------A................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0
.............................................................................................................................................................................................................................................................................................................................................GCATACAGCGTGCTCGCC................................	18	1	2.00	2	0	0	1	1
...............TTTTGCAGTC--GGGTAAATGCT.........................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0
...................................................................................................................................................................................................................................................................................................................................................................AATGTACCTACGAAAGTGC.........	19	1	2.00	2	0	0	2	0
.....................AGTC--GGGTAAATGCTCT------ACAAACGAAC.......................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	2	0
.........................................................................................................................................................................................................................................................................................................................................................................CCTACGAAAGTGCCTCCGTCTG	22	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................GCCAATCAATGTACCTACGAAAGTGC.........	26	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................GTACCTACGAAAGTGCCTC......	19	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................GTGCTCGCCAATCAATGTAC.....................	20	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................CGCCAATCAATGTACCTACGAAAGTGC.........	27	1	1.00	1	0	0	1	0
........................C--GGGTAAATGCTCT------ACAAACGAAC.......................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
............TCGTTTTGCAGTC--GGGTAAATGC..........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
....................................CTCT------ACAAACGAACAAACTG.................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................GTACCTACGAAAGTGCCTCC.....	20	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................CAGCGTGCTCGCCAATCAATGT.......................	22	1	1.00	1	0	0	1	0
...............................AAATGCTCT------ACAAACGAA........................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.........GACTCGTTTTGCAGTC--GGGTAAATG...........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.................TTGCAGTC--GGGTAAATGCT.........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.........GACTCGTTTTGCAGTC--GGGT................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................ACAGCGTGCTCGCCAATCAAT.........................	21	1	1.00	1	0	0	1	0
......................................CT------ACAAACGAACAAACTGT................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
................................AATGCTCT------ACAAACGAAC.......................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................GCTCGCCAATCAATGTACC....................	19	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................TACCTACGAAAGTGCCTCCGT...	21	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................ATACAGCGTGCTCGCCAATCC...........................	21	1	1.00	1	0	0	1	0
....................CAGTC--GGGTAAATGCTCT------AC...............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................CCTACGAAAGTGCCTCCGT...	19	1	1.00	1	0	0	1	0
.....................AGTC--GGGTAAATGCTCT------AC...............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................GCGTGCTCGCCAATCAATGTACCTAC.................	26	1	1.00	1	0	0	1	0
...........CTCGTTTTGCAGTC--GGGTAAATGCTC........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
...................GCAGTC--GGGTAAATGCTCT------ACAAAC...........................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................CGCCAATCAATGTACCTACGAAAG............	24	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................CTACGAAAGTGCCTCCGTC..	19	1	1.00	1	0	0	1	0
..............GTTTTGCAGTC--GGGTAAATGCT.........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.....................AGTC--GGGTAAATGCTCT------ACAAACGAA........................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................ATCAATGTACCTACGAAAGT...........	20	1	1.00	1	0	0	1	0
.........GACTCGTTTTGCAGTC--GGGTAAATGCT.........................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................ATACAGCGTGCTCGCCAATCAATGTAC.....................	27	1	1.00	1	0	0	1	0
CCACCG---GACTCGTTTTGCAGTC--GG..................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................ATCAATGTACCTACGAAAGTGC.........	22	1	1.00	1	0	0	1	0
......................................CT------ACAAACGAACAAACTG.................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................GTGCTCGCCAATCAATGTA......................	19	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................CTCGCCAATCAATGTACCTACG................	22	1	1.00	1	0	0	1	0
.CACCG---GACTCGTTTTGCAGTC--GG..................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
....................................CTCT------ACAAACGAACAAACT..................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
................TTTGCAGTC--GGGTAAATGCT.........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................TGTACCTACGAAAGTGCCTCCGTCT.	25	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................ATGTACCTACGAAAGTGCCTCCGTC..	25	1	1.00	1	0	0	1	0
.................TTGCAGTC--GGGTAAATGCTCT------ACAAAC...........................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................CAATGTACCTACGAAAGTGCCTC......	23	1	1.00	1	0	0	1	0
.....................AGTC--GGGTAAATGCTCT------ACAAACGA.........................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................ACCTACGAAAGTGCCTCCGTCT.	22	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................AATCAATGTACCTACGAAAGTGC.........	23	1	1.00	1	0	0	1	0
................................AATGCTCT------ACAAACGAACAAACTGC................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................GTACCTACGAAAGTGCCT.......	18	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................ATGTACCTACGAAAGTGCCTC......	21	1	1.00	1	0	0	1	0
.....................................TCT------ACAAACGAACAAACT..................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................TCAATGTACCTACGAAAGTGCCTC......	24	1	1.00	1	0	0	1	0
.............CGTTTTGCAGTC--GGGTAAATGCTCT------A................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
...........CTCGTTTTGCAGTC--GGGTAAATG...........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
...............TTTTGCAGTC--GGGTAAATGCTCT------.................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................GCATACAGCGTGCTCGCCAATC............................	22	1	1.00	1	0	0	1	0
...........CTCGTTTTGCAGTC--GGGTAAATGCTCT------A................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................ATACAGCGTGCTCGCCAATCAATGTA......................	26	1	1.00	1	0	0	1	0
......................................CT------ACAAACGAACAAACTGCAT..............................................................................................................................................................................................................................................................................................................................	21	4	0.75	3	0	0	3	0

dm3

CCACCG---GACTCGTTTTGCAGTC--GGGTAAATGCTCT------GCAAACAATCAAACTGTGAGTTACCAATTGCAAA----------------------CCTACTAAATCCCTGCCTAGAT-------CCCAAAAG-ACATGACAAGTCCGTTAACCAAATCTTTACAATTTCTTACATCCTTGATATGAAATCCAATCATATGGAAAGTTAACGAACTT-TCATAGGCACCTCGATCATACTGGAC-----A---------------------------------ATTACCTGCATCCTTTAGTGAATGTGATTTACTTCTTTCCGCAGGCATACAACGTGCTCGCCAATCAATGTACCTACGAAAGTGCCTCCGTCTG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................................................................................................................................................................................................................................................................................................ATACAACGTGCTCGCCAATCAAT.........................	23	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AGTC--GGGTAAATGCTCT------GC...............................................................................................................................................................................................................................................................................................................................................	19	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TGCAGTC--GGGTAAATGCTC........................................................................................................................................................................................................................................................................................................................................................	19	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0
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....................CAGTC--GGGTAAATGCTCT------GA...............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GAATGTGATTTACTTCTTTCCGCA...................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TTTGCAGTC--GGGTAAATG...........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CGTGCTCGCCAATCAATGTACC....................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ATACAACGTGCTCGCCAATCA...........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TGCTCT------GCAAACAATCAAAC...................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................ATCAATGTACCTACGAAAGT...........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CCACTG---GAATTGTTTTGCACAC--GTCTAAATGCGAT------TTGCAGTCACAAACTGTGAGTTACCAATTGCAAG----------------------CGTACAGAATCTAATC-TA-AT-------CCCAAAACCACATTGC---TT---------CGACTTTACATTTACCTCGAGCATTTACATGTGAATG-TC---------CTACATGCTAATC-CTCTAGATACTCGTACTCCGCTTGCA-----CAGGCCCATCGATCATAATACATAA----TGCGAACCAATTGTATCCTTAAGTGTACGTGATTTACTCTTTTCCGCAGGCATTCAACGTACTCACCGGAGAATGTACCTACGAAACCCCCAATGTCTG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................................................................................................................................................................................................................................................................................CAACGTACTCACCGGAGAAT.........................	20	1	7.00	7	0	5	0	2	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ATTCAACGTACTCACCGGAGAAT.........................	23	1	6.00	6	0	2	0	4	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TCAACGTACTCACCGGAGAAT.........................	21	1	5.00	5	0	4	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ATTCAACGTACTCACCGGAGA...........................	21	1	5.00	5	0	2	0	3	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ATTCAACGTACTCACCGGA.............................	19	1	4.00	4	0	1	0	3	0	0	0
................TTTGCACAC--GTCTAAATGCGAT------TTGC.............................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	2	0	2	0	0	0
CCACTG---GAATTGTTTTGCACAC--....................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	1	0	2	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................CTCACCGGAGAATGTACCTACGAA..............	24	1	2.00	2	0	2	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CATTCAACGTACTCACCGGAGA...........................	22	1	2.00	2	0	0	0	2	0	0	0
.....................ACAC--GTCTAAATGCGAT------TTGCAGTCACA......................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	2	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CAACGTACTCACCGGAGAATGT.......................	22	1	2.00	2	0	2	0	0	0	0	0
...........................GTCTAAATGCGAT------TTGCAGT..........................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TCAACGTACTCACCGGAGAATGTAC.....................	25	1	2.00	2	0	1	0	1	0	0	0
.....................ACAC--GTCTAAATGCGAT------TTGC.............................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	1	0	0	0
..........AATTGTTTTGCACAC--GTCT................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	0	1	0	0	0
.............TGTTTTGCACAC--GTCTAAATGC..........................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	1	0	1	0	0	0
....................CACAC--GTCTAAATGCGAT------TTGCA............................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TCAACGTACTCACCGGAGAATG........................	22	1	2.00	2	0	2	0	0	0	0	0
......................CAC--GTCTAAATGCGAT------TTGCA............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................CACCGGAGAATGTACCTAC.................	19	1	1.00	1	0	1	0	0	0	0	0
..............GTTTTGCACAC--GTCTAAATGCG.........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TACTCACCGGAGAATGTAC.....................	19	1	1.00	1	0	0	0	1	0	0	0
.........GAATTGTTTTGCACAC--GTCTAAATGC..........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
CCACTG---GAATTGTTTTGCACAC--GTCT................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0
........................C--GTCTAAATGCGAT------TTGC.............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................ACCTACGAAACCCCCAATGT...	20	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................CGGAGAATGTACCTACGAAACCCCC........	25	1	1.00	1	0	1	0	0	0	0	0
...........................GTCTAAATGCGAT------TTGCAGTCACA......................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
...............TTTTGCACAC--GTCTAAATGC..........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
............TTGTTTTGCACAC--GTCTAAATG...........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TCAACGTACTCACCGGAGAAC.........................	21	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CAACGTACTCACCGGAGAATGTACC....................	25	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AACGTACTCACCGGAGAATGTACC....................	24	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GCATTCAACGTACTCACCGGA.............................	21	1	1.00	1	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GCATTCAACGTACTCACCGGAGAA..........................	24	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................ATGTACCTACGAAACCCCCA.......	20	1	1.00	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TACGAAACCCCCAATGTCC.	19	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TCAACGTACTCACCGGAGAATGT.......................	23	1	1.00	1	0	1	0	0	0	0	0
...............TTTTGCACAC--GTCTAAATGCGAT------TTGC.............................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................CTACGAAACCCCCAATGTCT.	20	1	1.00	1	0	0	0	1	0	0	0
..................................TGCGAT------TTGCAGTCACAAACTG.................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
.................................ATGCGAT------TTGCAGTCACAAACTGC................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ATTCAACGTACTCACCGGAGAATGT.......................	25	1	1.00	1	0	1	0	0	0	0	0
.................TTGCACAC--GTCTAAATGCGAT------.................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................GAGAATGTACCTACGAAACCCCC........	23	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AACGTACTCACCGGAGAATGTACCTACGA...............	29	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GCATTCAACGTACTCACCGGAGAAT.........................	25	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................ACTCACCGGAGAATGTACCTAC.................	22	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ATTCAACGTACTCACCGGAG............................	20	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ATTCAACGTACTCACCGGAGAATGTAC.....................	27	1	1.00	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................CACCGGAGAATGTACCTACGAAACCCCC........	28	1	1.00	1	0	1	0	0	0	0	0
....................................CGAT------TTGCAGTCACAAACTGC................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................ACGTACTCACCGGAGAAT.........................	18	1	1.00	1	0	1	0	0	0	0	0
.......................AC--GTCTAAATGCGAT------TTGCAGT..........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
..........AATTGTTTTGCACAC--GTCTAAATGCGA........................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTACTCACCGGAGAATGT.......................	18	1	1.00	1	0	0	0	1	0	0	0
......................CAC--GTCTAAATGCGAT------TTGC.............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GTACCTACGAAACCCCCAAT.....	20	1	1.00	1	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CAACGTACTCACCGGAGAA..........................	19	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................ACTCACCGGAGAATGTACCTA..................	21	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TCAACGTACTCACCGGAGAA..........................	20	1	1.00	1	0	0	0	1	0	0	0
...........................GTCTAAATGCGAT------TTGCAGTCACAAA....................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................CACCGGAGAATGTACCTACGAAACCCC.........	27	1	1.00	1	0	1	0	0	0	0	0
.............................CTAAATGCGAT------TTGCAGTCACAAACTGC................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
............TTGTTTTGCACAC--GTCTAAATGC..........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
......................CAC--GTCTAAATGCGAT------TTGCAGT..........................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTACTCACCGGAGAATGTA......................	19	1	1.00	1	0	0	0	1	0	0	0
...........ATTGTTTTGCACAC--GTCTAAATGCG.........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
..........AATTGTTTTGCACAC--GTCTAAATGC..........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTACTCACCGGAGAATGTAC.....................	20	1	1.00	1	0	1	0	0	0	0	0
................TTTGCACAC--GTCTAAATGCG.........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GTACCTACGAAACCCCCAATGT...	22	1	1.00	1	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................ACTCACCGGAGAATGTACCT...................	20	1	1.00	1	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AACGTACTCACCGGAGAAT.........................	19	1	1.00	1	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................GTACTCCGCTTGCA-----CAGGCCCATC......................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................GAATGTACCTACGAAACCCCC........	21	1	1.00	1	0	1	0	0	0	0	0
..................TGCACAC--GTCTAAATGCGAT------TTGC.............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
................TTTGCACAC--GTCTAAATGCGA........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
...............................AAATGCGAT------TTGCAGTCACAAACTGC................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0

droYak3

CGATCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA------------------------------------------------------------------------------TGCATATCCTTTGTATCCTTTAGTGTATGTGACTCACTCTCTTTCGCAGATATACAACGCGCTCACCGGTCAATGTGCCTACTCAAGTACCGGCGCCTG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................................................................................................................................................................................................................................................................................................ATACAACGCGCTCACCGGT.............................	19	2	1.00	2	0	0	1	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................CAATGTGCCTACTCAAGTACCGGC.....	24	2	1.00	2	0	1	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GTGCCTACTCAAGTACCGGC.....	20	2	1.00	2	0	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................CTACTCAAGTACCGGCGC...	18	2	1.00	2	0	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CAACGCGCTCACCGGTCAATGT.......................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GCTCACCGGTCAATGTGCCTACTC...............	24	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................ACGCGCTCACCGGTCAATGTGC.....................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CAACGCGCTCACCGGTCAATGTGC.....................	24	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................CGCTCACCGGTCAATGTGC.....................	19	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................ACAACGCGCTCACCGGTC............................	18	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AACGCGCTCACCGGTCAATGTGCCTACTC...............	29	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GCTCACCGGTCAATGTGC.....................	18	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GCCTACTCAAGTACCGGC.....	18	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TATACAACGCGCTCACCGGTCAATGTGC.....................	28	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................ATATACAACGCGCTCACCGGTCAATGT.......................	27	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

CCTCTG---GCATCTTTTTACATAC--TGGAACATGCTCT------GG---TAAACAAACTGTAAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAGGTCTATAACGCTGCCACCCAACAGTGTACCTACAACACGACTTCCGTGTG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCACTG---GCGTTTA--TGCATTCAGTGGAAAGTGTGCATCAACCACAACAAAGCAGAATGTGAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCATTCAATCCTCAAGCCCAGAACTGCGGCTATAAAACCGCTGCCATATG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCTCCG---GCGTTTACCTCGAGAA--GGGTGAATGCTCC------ACCGACAAACAGACTGTAAGTTACCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CCAGCACTGGTGTCACCTTGATGAC--CGGCACTTGCACG------GCGAATTCCAAGACTGTGAGTAATCTACCATTTTTTAAATTAAGACTTGAGGGGAGTAGATAGATTCAAGTT-TA-ATACGATGTCTCAAACA----------------------------------------TTTTGTCGA-----------TT---------TACCAAACCACTTACCCTAAAGTATGCTACTCTACTTAGATGATATTATCCT-------------TTAGC----TACGATCAAACTGGGTCACTAATTGATCTTGC----CTTCCTCTGATAGGCCTTCAACGTTAACACCGGAAATTGCGACTACGTCTCCACGAGCGTTTG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CGACCACTAG--------------------CACGTGTCCC------AC---TCCAACTTCTGTAAGTAATA--------------------------------------------------------------------------------------------ATTTTATAATTGAGTATAT-----T-----------TT---------TGTAAATCAATTC-CTCCGATT---------------------------------------------------------------------------------------ACGTTTAATTACAGTGTTTCAACGTTCAAAAGCAAATGTGTGACTACACGGGACCTACTGTATG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................................................................................................................................................................................................................................GACTACACGGGACCTACTGT...	20	1	9.00	9	0	7	2	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ATGTGTGACTACACGGGACC.........	20	1	5.00	5	0	5	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ATGTGTGACTACACGGGACCTACT.....	24	1	4.00	4	0	3	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ATGTGTGACTACACGGGAC..........	19	1	3.00	3	0	2	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AAATGTGTGACTACACGGGACC.........	22	1	3.00	3	0	3	0	0	0	0
...............................ACGTGTCCC------AC---TCCAACTTCTT.................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	3	0	0	0	0
.GACCACTAG--------------------CACGTGTCCC------AC---TCC.........................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	3	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AAATGTGTGACTACACGGGACCTACT.....	26	1	3.00	3	0	3	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AAATGTGTGACTACACGGGA...........	20	1	3.00	3	0	1	2	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTTCAAAAGCAAATGTGTGA.....................	20	1	3.00	3	0	2	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GACTACACGGGACCTACT.....	18	1	3.00	3	0	3	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GTGACTACACGGGACCTACT.....	20	1	2.00	2	0	2	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................AGCAAATGTGTGACTACACGGGAC..........	24	1	2.00	2	0	0	2	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTTCAAAAGCAAATGTGT.......................	18	1	2.00	2	0	0	2	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTTCAAAAGCAAATGTGTGACT...................	22	1	2.00	2	0	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AAATGTGTGACTACACGGGACCTACTGT...	28	1	2.00	2	0	2	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................AGCAAATGTGTGACTACACGGGACC.........	25	1	2.00	2	0	2	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GTGTGACTACACGGGACCTACT.....	22	1	2.00	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CAACGTTCAAAAGCAAATGTGT.......................	22	1	2.00	2	0	2	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................CAAATGTGTGACTACACGGGACCTAC......	26	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TGTGACTACACGGGACCTACC.....	21	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AAAGCAAATGTGTGACTAC.................	19	1	1.00	1	0	1	0	0	0	0
.....ACTAG--------------------CACGTGTCCC------AC---TCC.........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GACTACACGGGACCTACTGC...	20	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................AATGTGTGACTACACGGGACCTACT.....	25	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................CTACACGGGACCTACTGT...	18	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................CAAAAGCAAATGTGTGACTACACGG.............	25	1	1.00	1	0	1	0	0	0	0
CGACCACTAG--------------------CACGTGTCCC------AC---T...........................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GTTTCAACGTTCAAAAGCAAATGTGT.......................	26	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ATGTGTGACTACACGGGACCTACTG....	25	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................AAAAGCAAATGTGTGACTACACGGGACC.........	28	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GACTACACGGGACCTACTGTATG	23	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GTTTCAACGTTCAAAAGC...............................	18	1	1.00	1	0	1	0	0	0	0
.GACCACTAG--------------------CACGTGTCC........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TGTGTGACTACACGGGAC..........	18	1	1.00	1	0	1	0	0	0	0
......CTAG--------------------CACGTGTCCC------AC---TCCAACT.....................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................CAAAAGCAAATGTGTGACTA..................	20	1	1.00	1	0	1	0	0	0	0
...............................ACGTGTCCC------AC---TCCAACTTCC..................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ATGTGTGACTACACGGGACCTA.......	22	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AAATGTGTGACTACACGGGACCT........	23	1	1.00	1	0	1	0	0	0	0
......CTAG--------------------CACGTGTCCC------AC---TCCAAC......................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GTGTGACTACACGGGACCTACTGC...	24	1	1.00	1	0	1	0	0	0	0
.........G--------------------CACGTGTCCC------AC---TCCAACTTCT..................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TTTCAACGTTCAAAAGCAAATGC.........................	23	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TGTGACTACACGGGACCTACTGT...	23	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CAACGTTCAAAAGCAAATGTGTGACT...................	26	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................AGCAAATGTGTGACTACACGGGACCT........	26	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................AATGTGTGACTACACGGGAC..........	20	1	1.00	1	0	1	0	0	0	0
...CCACTAG--------------------CACGTGTCCC------AC---TC..........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
....CACTAG--------------------CACGTGTCCC------AC---TC..........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................AAGCAAATGTGTGACTACACGGGAC..........	25	1	1.00	1	0	1	0	0	0	0
CGACCACTAG--------------------CACGTGTCC........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GTTTCAACGTTCAAAAGCAAATGT.........................	24	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................CTACACGGGACCTACTGTATG	21	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GCAAATGTGTGACTACACGGGACCTACT.....	28	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CGTTCAAAAGCAAATGTGTGA.....................	21	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GTGTGACTACACGGGACCTAC......	21	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TGTGACTACACGGGACCTA.......	19	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTTCAAAAGCAAATGTGTGACC...................	22	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GCAAATGTGTGACTACACGGGAC..........	23	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................AAGCAAATGTGTGACTACACGGG............	23	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................CAAAAGCAAATGTGTGACC...................	19	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TGACTACACGGGACCTACTGT...	21	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AAATGTGTGACTACACGGGAC..........	21	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTTCAAAAGCAAATGTGTGAC....................	21	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CGTTCAAAAGCAAATGTGTGACT...................	23	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GTTTCAACGTTCAAAAGCAAATGTGC.......................	26	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GTGACTACACGGGACCTACTGT...	22	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GTTTCAACGTTCAAAAGCAAAT...........................	22	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................CAAATGTGTGACTACACGGGACC.........	23	1	1.00	1	0	1	0	0	0	0
.GACCACTAG--------------------CACGTGTCCC------A................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GTGTGACTACACGGGACC.........	18	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GTGTGACTACACGGGACCTACC.....	22	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ATGTGTGACTACACGGGACCT........	21	1	1.00	1	0	1	0	0	0	0
....CACTAG--------------------CACGTGTCCC------AC---TCC.........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GCAAATGTGTGACTACACGGGACCT........	25	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................AAAAGCAAATGTGTGACTACACGGGA...........	26	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TCAACGTTCAAAAGCAAAT...........................	19	1	1.00	1	0	1	0	0	0	0
.....ACTAG--------------------CACGTGTCCC------AC---TCCAAC......................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AACGTTCAAAAGCAAATGTGTGACT...................	25	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GCAAATGTGTGACTACACGGGA...........	22	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GACTACACGGGACCTACTG....	19	1	1.00	1	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTTCAAAAGCAAATGTGC.......................	18	2	0.50	1	0	1	0	0	0	0

droBip1

GCTGGAAA--AGCAGACCCAAGCAC--TGGCGAGTGTTCA------GG---TGACACTACAGTGAGTAAAAA-------------------------------------------------------------------------------------------ACTTAAGAATTGAGTATTTCCCAGA-----------TT---------TATGAATCAATTC-CTCCAAAT---------------------------------------------------------------------------------------TCATTGAATTACAGAGTTTCAACGTGCAGAAGCAAATTTGTGACTACTCGACCAATAATGTATG	Size	Hit Count	Total Norm	Total
No Reads

dp5

GGCACGCT-----------TCAGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGTGAGATC-CCGCGGATCCCTGCACCTTGCTTGAG-----C------------------------ACTG---------TACTTA--------------TTCAATGCCCCTATTTTCAGGCATACAACGTGGAAACTGGCGAATGTGTGTACTTCAACGACAATGTGTG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................ATACAACGTGGAAACTGGC.............................	19	1	54.00	54	0	3	21	0	20	0	0	0	0	10
............................................................................................................................................................................................................................................................................................................................................GGCATACAACGTGGAAACTGGC.............................	22	1	10.00	10	0	1	1	0	4	0	0	0	0	4
..............................................................................................................................................................................................................................................................................................................................................CATACAACGTGGAAACTGGC.............................	20	1	9.00	9	0	0	5	0	3	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................GTGGAAACTGGCGAATGTGT.....................	20	1	8.00	8	0	0	1	0	6	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................ATACAACGTGGAAACTGGCGAATGTGT.....................	27	1	7.00	7	0	0	7	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GTACTTCAACGACAATGTGT.	20	1	6.00	6	0	0	3	0	3	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AACGTGGAAACTGGCGAATGTGT.....................	23	1	4.00	4	0	1	2	0	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................ATACAACGTGGAAACTGGCGAATGT.......................	25	1	4.00	4	0	0	1	0	0	0	0	0	0	3
.......T-----------TCAGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGC......................................................................................................................................................................	25	1	4.00	4	0	0	4	0	0	0	0	0	0	0
...ACGCT-----------TCAGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGC......................................................................................................................................................................	29	1	4.00	4	0	0	4	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CAACGTGGAAACTGGCGAATGTGT.....................	24	1	4.00	4	0	0	2	0	2	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GCATACAACGTGGAAACTGGC.............................	21	1	3.00	3	0	0	1	0	2	0	0	0	0	0
.....GCT-----------TCAGTC--GAACAAATGTT.........................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	1	0	1	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................GGCATACAACGTGGAAACTGGCGA...........................	24	1	3.00	3	0	2	0	0	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................ACAACGTGGAAACTGGCGAATGT.......................	23	1	3.00	3	0	0	3	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CATACAACGTGGAAACTG...............................	18	1	2.00	2	0	0	0	0	1	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................ATACAACGTGGAAACTGGCGAATGTGC.....................	27	1	2.00	2	0	0	2	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AACGTGGAAACTGGCGAATGTGTGT...................	25	1	2.00	2	0	0	0	0	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GTACTTCAACGACAATGT...	18	1	2.00	2	0	0	0	0	2	0	0	0	0	0
...ACGCT-----------TCAGTC--GAACAAATGTT.........................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	0	1	0	0	0	0	0
.....................AGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGC......................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AACTGGCGAATGTGTGTACTTCAAC...........	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CAACGTGGAAACTGGCGAATGTG......................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GTGTACTTCAACGACAATGTGT.	22	1	2.00	2	0	0	1	0	1	0	0	0	0	0
.....GCT-----------TCAGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGC......................................................................................................................................................................	27	1	2.00	2	0	0	1	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTGGAAACTGGCGAATGTGTGTAC.................	24	1	2.00	2	0	0	0	0	1	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................GGAAACTGGCGAATGTGTG....................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AACTGGCGAATGTGTGTAC.................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CGAATGTGTGTACTTCAACG..........	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AACTGGCGAATGTGTGTACTT...............	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GGAAACTGGCGAATGTGTGTACTT...............	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................CGTGGAAACTGGCGAATGTGTGT...................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................GTGGAAACTGGCGAATGTGTGTACTTC..............	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ATACAACGTGGAAACTGGCGAATGTGTGT...................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.GCACGCT-----------TCAGTC--GAACAAAT............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTGGAAACTGGCGAATGT.......................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CATACAACGTGGAAACTGGCG............................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................GGCATACAACGTGGAAACTGGCGAATGT.......................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AACTGGCGAATGTGTGTA..................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ATACAACGTGGAAACTGGCGAAT.........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................GTACTTCAACGACAATGC...	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ATACAACGTGGAAACTGGCG............................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......CT-----------TCAGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGC......................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................GAATGTGTGTACTTCAACGAC........	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ATACAACGTGGAAACTGGCGAATGTG......................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0
....................CAGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGC......................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..CACGCT-----------TCAGTC--GAACAAATGTT.........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................ACGTGGAAACTGGCGAATGTGTGT...................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................CAACGTGGAAACTGGCGAAT.........................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................ACAACGTGGAAACTGGCGAATGTGT.....................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CAACGTGGAAACTGGCGAATGT.......................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................ACGTGGAAACTGGCGAATGTGT.....................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GGAAACTGGCGAATGTGTGTA..................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TACAACGTGGAAACTGGCGA...........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................GCGAATGTGTGTACTTCAACGACA.......	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AACGTGGAAACTGGCGAATGTGC.....................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
GGCACGCT-----------TCAGTC--GAACAAATGAC.........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ATACAACGTGGAAACTGGCGAATG........................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1
....CGCT-----------TCAGTC--GAACAAATGT..........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
GGCACGCT-----------TCAGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC.........................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GGAAACTGGCGAATGTGTGTAC.................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GAAACTGGCGAATGTGTGTA..................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GTGTACTTCAACGACAATGTG..	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTGGAAACTGGCGAATGTGTGTACT................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...ACGCT-----------TCAGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------............................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTGGAAACTGGCGAATG........................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................CAACGTGGAAACTGGCGA...........................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TACAACGTGGAAACTGGCGAATGTGTGT...................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................GGCATACAACGTGGAAACTGGCGAATGC.......................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ATACAACGTGGAAACTGGCGA...........................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CATACAACGTGGAAACTGGCGAATGTGT.....................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................GGCATACAACGTGGAAACTGGT.............................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................ACTGGCGAATGTGTGTACTT...............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CGTGGAAACTGGCGAATGTGTGTACTT...............	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................TACAACGTGGAAACTGGCG............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GAAACTGGCGAATGTGTGTAC.................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GGAAACTGGCGAATGTGTGTACTTCAAC...........	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AACGTGGAAACTGGCGAAT.........................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CGTGGAAACTGGCGAATGTGTGTA..................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................ACTTCAACGACAATGTGC.	18	2	0.50	1	0	0	1	0	0	0	0	0	0	0

droPer2

GGCACGCT-----------TCAGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGTGAGATC-CCGCGGATCCCTGCACCTTGCTTGAG-----C------------------------ACTG---------TACTTA--------------TTCAATGCCCCTATTTTCAGGCATACAACGTGGAAACTGGCGAATGTGTGTACGCCAACGACAATGTGTG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................C--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGC......................................................................................................................................................................	19	1	56.00	56	56	0	0	0	0	0
.......T-----------TCAGTC--GAACAAATGTT.........................................................................................................................................................................................................................................................................................................................................................	18	1	29.00	29	29	0	0	0	0	0
.....................AGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGC......................................................................................................................................................................	22	1	13.00	13	11	0	2	0	0	0
...........................GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGC......................................................................................................................................................................	18	1	12.00	12	12	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ATACAACGTGGAAACTGGC.............................	19	1	11.00	11	0	0	11	0	0	0
......................GTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGC......................................................................................................................................................................	21	1	11.00	11	10	0	1	0	0	0
GGCACGCT-----------TCAGTC--GAAC................................................................................................................................................................................................................................................................................................................................................................	18	1	9.00	9	9	0	0	0	0	0
....................CAGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGC......................................................................................................................................................................	23	1	8.00	8	8	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CAACGTGGAAACTGGCGAATGTGT.....................	24	1	7.00	7	5	0	2	0	0	0
.......T-----------TCAGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------............................................................................................................................................................................	19	1	7.00	7	6	0	1	0	0	0
......CT-----------TCAGTC--GAACAAATGTT.........................................................................................................................................................................................................................................................................................................................................................	19	1	7.00	7	5	0	2	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GTACGCCAACGACAATGTGT.	20	1	6.00	6	0	0	6	0	0	0
...ACGCT-----------TCAGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGC......................................................................................................................................................................	29	1	6.00	6	6	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTGGAAACTGGCGAATGTGT.....................	20	1	6.00	6	0	0	6	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AACTGGCGAATGTGTGTACGC...............	21	1	5.00	5	3	0	2	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ATACAACGTGGAAACTGGCGAATGT.......................	25	1	4.00	4	4	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GAAACTGGCGAATGTGTGTACGC...............	23	1	4.00	4	0	0	4	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CAACGTGGAAACTGGCGAATGT.......................	22	1	3.00	3	2	0	1	0	0	0
.....GCT-----------TCAGTC--GAACAAATGTT.........................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	3	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ATACAACGTGGAAACTGGCGA...........................	21	1	3.00	3	0	0	3	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AACGTGGAAACTGGCGAATGTGTGT...................	25	1	3.00	3	3	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTACGCCAACGACAATGT...	24	1	3.00	3	1	0	2	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CAACGTGGAAACTGGCGA...........................	18	1	2.00	2	0	0	2	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTACGCCAACGAC........	19	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ATACAACGTGGAAACTGGCG............................	20	1	2.00	2	0	0	2	0	0	0
..CACGCT-----------TCAGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC.........................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................ACGTGGAAACTGGCGAAT.........................	18	1	2.00	2	2	0	0	0	0	0
.......T-----------TCAGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC.........................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
...................TCAGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC.........................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
GGCACGCT-----------TCAGTC--GAACAAATG...........................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................AAACTGGCGAATGTGTGTACG................	21	1	2.00	2	0	0	2	0	0	0
.GCACGCT-----------TCAGTC--GAACAAATGTT.........................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
...........................GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGCA.....................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CGAATGTGTGTACGCCAACGACAATGT...	27	1	1.00	1	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ATACAACGTGGAAACTGG..............................	18	1	1.00	1	0	0	1	0	0	0
....CGCT-----------TCAGTC--GAACAAAT............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GTACGCCAACGACAATGTGTG	21	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................GAATGTGTGTACGCCAACGACAATGT...	26	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AACGTGGAAACTGGCGAATGTGT.....................	23	1	1.00	1	0	0	1	0	0	0
.....................AGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGCT.....................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTGGAAACTGGCGAATGT.......................	18	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CATACAACGTGGAAACTGGCGA...........................	22	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CAACGTGGAAACTGGCGAATGTGTGT...................	26	1	1.00	1	1	0	0	0	0	0
......CT-----------TCAGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC.........................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AACGTGGAAACTGGCGAATGTGTGG...................	25	1	1.00	1	1	0	0	0	0	0
....................CAGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGAC......................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTACGCCAACGACAATGTGT.	26	1	1.00	1	0	0	1	0	0	0
........................C--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGCAT....................................................................................................................................................................	21	2	1.00	2	2	0	0	0	0	0
..CACGCT-----------TCAGTC--GAACAAATGTT.........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
GGCACGCT-----------TCAGTC--GAACAAATGTT.........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AACTGGCGAATGTGTGTAC.................	19	1	1.00	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................AAACTGGCGAATGTGTGTACGCCAAC...........	26	1	1.00	1	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AACTGGCGAATGTGTGTACGCC..............	22	1	1.00	1	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................GGCATACAACGTGGAAACT................................	19	1	1.00	1	0	0	1	0	0	0
.....GCT-----------TCAGTC--GAACAAATGT..........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................AAACTGGCGAATGTGTGTACGC...............	22	1	1.00	1	0	0	1	0	0	0
...................TCAGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------............................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ATACAACGTGGAAACTGGCGAATGTGT.....................	27	1	1.00	1	0	0	1	0	0	0
........................C--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGG......................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GGAAACTGGCGAATGTGTGTACGC...............	24	1	1.00	1	0	0	1	0	0	0
........................C--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGCT.....................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CGAATGTGTGTACGCCAAC...........	19	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CAACGTGGAAACTGGCGAATGTGC.....................	24	1	1.00	1	1	0	0	0	0	0
.....................AGTC--GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGG.......................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
...........................GAACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGCT.....................................................................................................................................................................	19	3	0.33	1	1	0	0	0	0	0
............................AACAAATGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGCT.....................................................................................................................................................................	18	6	0.17	1	1	0	0	0	0	0

dsi_28166

3l:19785363-19785494 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads