ID:

dsi_28099

 Coordinate:

node_102570:3196-3345 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.4 -6.2 -6.0

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
PROTOP_BDNAP+
mature
  1. dsi_31199  2l:10456914-10456932 -
  2. 2l:21439467-21439485 -
  3. 2l:22575166-22575184 -
  4. 2l:22699613-22699631 -
  5. 2l:23112616-23112634 -
  6. 2l:23177782-23177800 -
  7. 2r:152817-152835 -
  8. 2r:210751-210769 -
  9. 2r:1528300-1528318 -
  10. dsi_13176  2r:2622769-2622787 -
  11. 3l:23631863-23631881 -
  12. 3r:2136774-2136792 -
  13. dsi_32082  3r:5132192-5132210 -
  14. dsi_31173  x:20794361-20794379 -
  15. node_95080:608-626 -
  16. node_34823:95-113 -
  17. node_80147:510-528 -
  18. node_41949:805-823 -
  19. node_31462:565-583 -
  20. node_29060:21526-21544 -
  21. 2l:20975482-20975500 -
  22. 2l:21439538-21439556 -
  23. 2l:21539436-21539454 -
  24. 2l:21717467-21717485 -
  25. 2l:22970193-22970211 -
  26. 2r:754261-754279 -
  27. 2r:2180700-2180718 -
  28. dsi_8650  3l:12711149-12711167 -
  29. 3l:23432084-23432102 -
  30. 3l:23515075-23515093 -
  31. 3l:23997419-23997437 -
  32. dsi_31899  3r:302782-302800 -
  33. dsi_31294  3r:14653896-14653914 -
  34. 4:1001998-1002016 -
  35. x:20536022-20536040 -
  36. node_77409:3866-3884 -
  37. node_58045:156-174 -
  38. node_117782:28-46 -
  39. node_22553:74-92 -
  40. node_35645:109-127 -
  41. 2l:19689238-19689256 -
  42. 2l:20858108-20858126 -
  43. 2l:20967166-20967184 -
  44. 2l:22040879-22040897 -
  45. 2l:22343947-22343965 -
  46. 2l:23100571-23100589 -
  47. 2l:23474702-23474720 -
  48. 2r:29202-29220 -
  49. 2r:937563-937581 -
  50. 2r:1265855-1265873 -
  51. 2r:1610652-1610670 -
  52. 3l:23315012-23315030 -
  53. 3l:24094134-24094152 -
  54. x:20316275-20316293 -
  55. x:20416286-20416304 -
  56. node_10122:555-573 -
  57. node_6958:462-480 -
  58. node_11694:1985-2003 -
  59. node_50072:206-224 -
  60. dsi_28099  node_102570:3239-3257 -
  61. 2l:20934171-20934189 +
  62. 2l:21446744-21446762 +
  63. 2l:23065116-23065134 +
  64. 2r:74021-74039 +
  65. 2r:520146-520164 +
  66. 2r:1454010-1454028 +
  67. 2r:1454059-1454077 +
  68. 2r:3166406-3166424 +
  69. 3l:23076437-23076455 +
  70. 4:624371-624389 +
  71. node_32604:206-224 +
  72. node_34956:418-436 +
  73. node_32706:437-455 +
  74. node_72290:8105-8123 +
  75. node_85668:11156-11174 +
  76. node_69719:715-733 +
  77. node_109109:420-438 +
  78. node_21405:611-629 +
  79. node_89630:980-998 +
  80. node_50677:1648-1666 +
  81. dsi_31843  2r:1759777-1759795 +
  82. 3r:6576008-6576026 +
  83. node_112952:390-408 +
  84. 2l:22866229-22866247 -
  85. 2l:23453430-23453448 -
  86. 2r:244206-244224 -
  87. 2r:325493-325511 -
  88. 2r:2284770-2284788 -
  89. x:18590115-18590133 -
  90. x:20626783-20626801 -
  91. node_67481:91-109 -
  92. node_52464:1909-1927 -
  93. node_45722:1003-1021 -
  94. 2l:20856966-20856984 +
  95. 2l:21491322-21491340 +
  96. 2l:22831007-22831025 +
  97. 2l:23264201-23264219 +
  98. 2r:428436-428454 +
  99. 2r:1264713-1264731 +
  100. 2r:2621712-2621730 +
  101. 3l:23952579-23952597 +
  102. 3l:24111542-24111560 +
  103. 4:72313-72331 +
  104. x:925457-925475 +
  105. x:6395927-6395945 +
  106. dsi_31160  x:20794273-20794291 +
  107. node_118182:6445-6463 +
  108. node_73012:1028-1046 +
  109. node_105875:7414-7432 +
  110. node_111346:5851-5869 +
  111. node_51476:1413-1431 +
  112. node_39540:368-386 +
  113. node_22417:3341-3359 +
  114. 2l:22158706-22158724 +
  115. 3l:23373779-23373797 +
  116. node_14979:1811-1829 +
  117. dsi_31312  2l:20743462-20743480 +
  118. dsi_31385  3l:18592487-18592505 +
  119. 3l:23444539-23444557 +
  120. 3r:2136002-2136020 +
  121. node_49804:349-367 +
  122. node_8255:324-342 +
star
  1. 2r:29178-29194 -
  2. node_11694:1957-1973 -
  3. dsi_28099  node_102570:3216-3232 -

Sense Strand Reads

ATGGTCGCAATGACCGTTCTGTGTCGAAGAAAACTTCTCAAAATGAACTTGTAAGTAAAATATTTTATTTTGTTGTGTCCTAACAATAGCCCCTTTTGATAATAAATATGGCATACGGTCAGACCAAAGACACTAGTATAACAAGATGCGTAACGGCCAACATTGGTTTAGCACTATGCAGTTAATTTTTTCGGTGATTTTTTTTGCCCTCCGTCCGCTCGCTTACGCTGAGAGCGTAGGAAATCTAAAA
******************************************************************************************************************************************........((((((..(((((....)))))......))))))********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR902009
testis
 O002
Head
..........................................................................................................................................TAACAAGATGCGTAACGGC............................................................................................. 19 0 20 184.70 3694 3686 0 8 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AACAAGATGCGTAAC................................................................................................ 15 0 20 17.30 346 0 346 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AACAAGATGCGTAACGGCCAA.......................................................................................... 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TAACAAGATGCGTAACGGCCAA.......................................................................................... 22 0 1 3.00 3 2 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................AACAAGATGCGTAACGGCCATCA........................................................................................ 23 1 9 2.44 22 21 0 0 0 0 0 0 0 0 0 0 1
...............GTTCTGTGTCGAAGAAAACTTCTCAA................................................................................................................................................................................................................. 26 0 1 2.00 2 0 0 0 1 0 0 0 1 0 0 0 0
...................TGTGTCGAAGAAAACTTCTCAAAATGAACT......................................................................................................................................................................................................... 30 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0
...................TGTGTCGAAGAAAACTTCTCAAAATGAAC.......................................................................................................................................................................................................... 29 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
.....CGCAATGACCGTTCTGTGTC................................................................................................................................................................................................................................. 20 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
.................TCTGTGTCGAAGAAAACTTCTCAAAA............................................................................................................................................................................................................... 26 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
..........................................................................................................................................TAACAAGATGCGTAACG............................................................................................... 17 0 20 1.65 33 0 33 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TAACAAGATGCGTAACGGCAAAGA........................................................................................ 24 2 2 1.50 3 0 0 2 0 0 1 0 0 0 0 0 0
...............GTTCTGTGTCGAAGAAAAC........................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................TAACAAGATGCGTAACGGCCATCAT....................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................TCTGTGTCGAAGAAAACTTCTCAAA................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................AACAAGATGCGTAACGGCCACCA........................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TAACAAGATGCGTAACGGCCAACA........................................................................................ 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................GAATAACAAGATGCGTAACGGCCAAC......................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................TGAACTTGTAAGTAAAATATTTTATT..................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AACAAGATGCGTAACGGCCAACATT...................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GTATAACAAGATGCGTAACGGCC............................................................................................ 23 0 3 1.00 3 0 1 0 2 0 0 0 0 0 0 0 0
.................................................................................................................................................ATGCGTAACGGCCAGCATCGGT................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................TCGAAGAAAACTTCTCAAAATGAACTT........................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CTCGCTTACGCTGAGAGCGTAGG.......... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CTCCGTCCGCTCGCTTACGCTGAGA................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...............GTTCTGTGTCGAAGAAAACTTCTCAAAAT.............................................................................................................................................................................................................. 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...........GACCGTTCTGTGTCGAAGAAAACTT...................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...GTCGCAATGACCGTTCTGTGTCGA............................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...............GTTCTGTGTCGAAGAAAACTT...................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................GTATAACAAGATGCGTAACGGCCAACA........................................................................................ 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................TAACAAGATGCGTAACGGCCAATA........................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AACAAGATGCGTAACGGCCAAC......................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TAACAAGATGCGTAACGGCAAAGAC....................................................................................... 25 3 4 1.00 4 0 0 2 0 0 2 0 0 0 0 0 0
.....CGCAATGACCGTTCTGTGTCGAAG............................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................AACAAGATGCGTAACGGCCAACA........................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AACAAGATGCGTAACGGCCTACATT...................................................................................... 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................TCGAAGAAAACTTCTCAAAATGAAC.......................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TAACAAGATGCGTAACGGCCAAT......................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................AACAAGATGCGTAACGGCCAACAT....................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............GTTCTGTGTCGAAGAAAACTTCTCAAA................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................TAACAAGATGCGTAACGGCCATCA........................................................................................ 24 1 8 0.88 7 7 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GTATAACAAGATGCGTAAC................................................................................................ 19 0 4 0.75 3 3 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GTATAACAAGATGCGTAACGGC............................................................................................. 22 0 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GTATAACAAGATGCGTAACGGCCA........................................................................................... 24 0 3 0.67 2 0 1 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................TAACAAGATGCGTAACGGCCGA.......................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CTCCGTCCGCTCGCTTACGCTAAGA................. 25 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................TAACAAGATGCGTACCGGCCAA.......................................................................................... 22 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................TAGTATAACAAGATGCGTAACGGCCA........................................................................................... 26 0 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................TGGTTTAGCACTATGCA...................................................................... 17 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GAATAACAAGATGCGTAACGGCAAAGA........................................................................................ 27 3 20 0.30 6 0 0 6 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCCGCTCGCTTACGCTGAGAGCGTA............ 25 0 20 0.25 5 0 0 0 0 0 0 0 0 5 0 0 0
.......................................................................................................................................GTATAACAAGATGCGTACCGGCCA........................................................................................... 24 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................AAAAAATACGGCATACGG.................................................................................................................................... 18 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GAATAACAAGATGCGTAACGGCCAATA........................................................................................ 27 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................AACAAGATGCGTAACGCCC............................................................................................ 19 1 20 0.20 4 4 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGCAACAAGATGCGTAACGGCC............................................................................................ 22 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................CAAAATGACCTTGTAACT.................................................................................................................................................................................................. 18 2 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GAATAACAAGATGCGTAACGGCCATCAT....................................................................................... 28 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TGAGAGCGTAGGAAATC..... 17 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TGAGAGCGTAGGAAATCTAAAA 22 0 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................TGAGAGCGTAGGAAAT...... 16 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................TGAACTTGTAAGAAAAAAATAT......................................................................................................................................................................................... 22 3 10 0.10 1 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................CCCTCCGTCCGCGCGG............................ 16 2 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0 0
...........................................................................................................................................AACAAGATGCGTAACGGCCATC......................................................................................... 22 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AACAAGATGCGTAACGGTGATCA........................................................................................ 23 3 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................AGGATGCGTAACGGTCAGC......................................................................................... 19 3 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AACAAGATGCGTAAAGGCTGA.......................................................................................... 21 3 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TAACAAGATGCGTAACGGCCTATT........................................................................................ 24 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................................GTCCGCTCGCTTACGCTGAGA................. 21 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................TAACAAGATGCGTAACGGCCAAA......................................................................................... 23 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................CTTACGCTGAGAGCGTA............ 17 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................ACAAGATGCGTAACGG.............................................................................................. 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TACCAGCGTTACTGGCAAGACACAGCTTCTTTTGAAGAGTTTTACTTGAACATTCATTTTATAAAATAAAACAACACAGGATTGTTATCGGGGAAAACTATTATTTATACCGTATGCCAGTCTGGTTTCTGTGATCATATTGTTCTACGCATTGCCGGTTGTAACCAAATCGTGATACGTCAATTAAAAAAGCCACTAAAAAAAACGGGAGGCAGGCGAGCGAATGCGACTCTCGCATCCTTTAGATTTT
**********************************************************************........((((((..(((((....)))))......))))))****************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 O001
Testis
 M023
head
 M024
male body		 GSM343915
embryo
..............................................................................................................................TTCTGTGATCATATTGTTCTACG..................................................................................................... 23 0 2 1.50 3 0 2 0 0 0 0 1 0 0 0
..........................................................TTATAAAATAAAACAACACAGGATT....................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...CAGCGTTACTGGCAAGACACAGCTT.............................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................CTGGTTTCTGTGATCATATTGTTC......................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................TTATAAAATAAAACAACACAGGAT........................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................TTTATAAAATAAAACAACACAGGAT........................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................GAGGCAGGCGAGCGAATGCGACTCT................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................CGAGCGAATGCGACTCTCGCATCCTT........ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GAGCGAATGCGACTCTCGCATCCTTT....... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CACTAAAAAAAACGGGAGGCAGGCG................................ 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.....................................................TCATTTTATAAAATAAAACAACACAGGAT........................................................................................................................................................................ 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................GTTCTACGCATTGCCGGTTGT........................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
...CAGCGTTACTGGCAAGACACAGCTTCTT........................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................ATAAAATAAAACAACACAGGATTTGT.................................................................................................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................AGGATTTGTATCGGGGAAAACTATT.................................................................................................................................................... 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................ACTAAAAAAAACGGGAGGCAGGCG................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................ACAACACAGGATTTGTATCGGGGAA........................................................................................................................................................... 25 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................................................ACAGGATTTGTATCGGGGAAAACTATTAT.................................................................................................................................................. 29 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AAAAAAAACGGGAGGCAT................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AGCGAATGCGACTCTCGCATCCT......... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................TGGTTTCTGTGATCATATTGTTC......................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................GCATTGCCGGTTGTAACCAAAT................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................GATCATATTGTTCTACGCATT................................................................................................. 21 0 4 0.75 3 0 0 0 0 0 0 3 0 0 0
..............................................................................................................................TTCTGTGATCATATTGTTCTACGCAT.................................................................................................. 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................GTTTCTGTGATCATATTGTTCTAC...................................................................................................... 24 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................TCTGTGATCATATTGTTCTACGCAT.................................................................................................. 25 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................TTCTGTGATCATATTGTTCTAC...................................................................................................... 22 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................TCTGTGATCATATTGTTCTACG..................................................................................................... 22 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................TCTAGTTTCTGTGATCATATTGTTCTAC...................................................................................................... 28 1 7 0.43 3 1 0 0 0 0 2 0 0 0 0
........................................................................................................................................ATATTGTTCTACGCATTGCCGGT........................................................................................... 23 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................AAAAAAACAGGAGGAAGGGGAG.............................. 22 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................TCATATTGTTCTACGCATTGCCGGT........................................................................................... 25 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................CAGTCTGGTTTCTGT...................................................................................................................... 15 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CACTAAGAAAAACGGGGGGCG.................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0
.............................................................................AGGAGTGTTATCGGG.............................................................................................................................................................. 15 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CAGGCGAGCGAATGCGACTCTCGCAT............ 26 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0
........................................................................................................................TCTGGTTTCTGTGATC.................................................................................................................. 16 0 9 0.11 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CGAGCGAATGCGACTCTCGCAT............ 22 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GCGAGCGAATGCGACTCTCGCAT............ 23 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
........................................................................................................................................ATGTTGTTCTACGCATTGCCGT............................................................................................ 22 2 13 0.08 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................AGGCGAGCGAATGCGACTCT................. 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CGAATGCGACTCTCGC.............. 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GCGAGCGAATGCGACTCTCGC.............. 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CGAGCGAGTGCGACTCTCGCATCTT......... 25 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................CTGGTTTCTGTGATC.................................................................................................................. 15 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CGAGCGAATGCGACTC.................. 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................TGCTCATTGCCGGTTGTTA...................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................AGGCGAGCGAATGCGACTCTCGCAT............ 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 node_102570:3146-3395 - dsi_28099 ATGGTCGCAATGACCGTTCTGTGTCGAAGAAAACTTCTCAAAATGAACTTGTAAGTAAAATATTTT---A-TT----TTG-TTGTGTCCT------------------------AACAA--------TAGCCCCT-TT-----------------------TGATAATAAATATGGCATACGGTCAGACCAAAGAC-ACTAGTAT------------AACAAGATGCGTAA--CGGCCA-AC----ATTGGTTTAGCACTATGCAGTTAATTTTTTCGGTGATT---TTTTTTGCCCTCCGTCCGCTCGCTTA-CGCTGAGAGCGTAGGAAATCTAAAA---------
droSec2 scaffold_78:119060-119314 - ATTGTCGCAATGACCGTTCTGTGTCGAAGAAAACTTCTCAAAATGAACTTGTAAGTAAAATATGTT---A-TT----TTG-TTGTGTCCT------------------------AAACA--------TAGCCCCT-TT-----------------------TGATAATAAATATTGCATACGGTCAGACCAAAGAC-ACTAGAAT------------AACAAGATGCGTAAAGCGGCCA-AC----ATTGGTTTAGCACTATGCAGTTAATTTTTTCGGTGACGGCCAAAATTGCCCTCCGTCCGCTCGCTTA-CGCAGAGAGCGTAAGAAATCTAAAA---------
dm3 chr2RHet:2915475-2915681 + ATTGTCGCAATGACCGTTCTGTGTCGAAGAAAACTTCCCAGAATGATCTTGTAAGTAAAATATGTTCTTA-TT----TTG-TTGTGTTTT------------------------AAACA--------TAACCCTT-TT-----------------------TGATCATAAATATAACATACTGTCAGACCAAAGAC-ATTAGAAT------------ACCAAGATGTGTAA--CGGCCATACAAGCATTGGTTTTGCACAATGCAGCTACTTTTTTTGGTGACT----------------------------------------------------------------
droEre2 scaffold_4770:6046098-6046333 + CTGGTCGCTGTATTTATTCGATATTT-------CGGCTCAAACGTAACTAGCACG-AAACTAGTTG---G-TT----TTG-TT---------------------------------------------AGCCGTT-TTCTGATATGAACTATCAACTCTTTG----------G-----TTTGGTCAGACCAAAGAC-ACT-GAAT------------AATAAGATGCGTAA--CGGCCATAA----ATTGGTTTTGCACTATGCCACTT---TTTT-GTTGGTGGCAGTAATTGCTCTCTTCCCGCTCGCATAAAATTGAGAGCATAA-AAATCTAAAA---------
droYak3 v2_chrUn_6728:145568-145813 - T-GGTCG---TGTCAGTTTTGGGCCGAAAGG--CTTCCT----TCTGCCTGTAACAGAAGTATAGT---A-TA----TTCTACGAGTAAT------------------------AAATATAA------ATACACT-TT-----------------------ATTTAAATGATTTTGCATAGTGTAAGACCAAAGAC-ATTATAAT------------AACAAGATGCGTAA--CGGCCATAC----ATTGGCTTTGCACTATGCAGCCACTTTTTT-GGTGACGACCAAAATTGCTCTCTTTTCGCTCGCCTAAAATAGAGAGCGTTA-AAATCTAAAA---------
droEug1 scf7180000407987:31522-31595 + GTTATCGTAATGACCGTTCACTGCCGAAGAATATTACCCATAATGAGCAAGTGAGTAAAATTTTGT---C-TT----GGT-AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301187:21693-21908 + AAGC------------------------------TTCTC----------------------------------TATTT-----------AAACAAAAACAAACATGTAAATAAGATGTAAAAATATATAG------CA-----------------------AAGTAAGTGATAG----T------ACAGTAAGGAT-AGTAAAATAACGAAAACACCACTAAGATACGTAA--TGGCCATAC----AATGGTTTTGCAATATGCAGCTATATTTTTGTGTGGTGCCGAAATTTACGCTCTTTTCACTCGCGTAACGATGAGAACTTG--GAGTTTAAAA---------
droTak1 scf7180000415873:54535-54703 + CTTTTGCTGTTAACG----------------------------------------------------------------------------------------------------------------------------------------------------------------GTATAGGGTAAAAGTAAAGACCAATATAA-----------TCTCTAAGATGAGTAA--CGGCCATAC----ATTCGTTTTGCAATATCCAGCCTGATTTTT-GGTGGTGACGAAAATTTCGCTCTTTCCGCTCGCTCAAAGTTGAGAGCGAAA-AAATCAAAAATATATATGT
droEle1 scf7180000486688:7682-7755 - ATTCACGTAATGACCGTTCACTGCCTAAAAATATTCCCCAGATTGAACCAGTAAGTAAAACTTTCT---A-TT----TTA-TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777419:3762-3968 + TTTT------------------------------------------------AAATAAATTAACCAATTT-TT----CTG-TTGTTTTTTC-----------------------AAAAA--------TAATGC------TGAAAT----------------CAACAGTAAATGT----TA-CGTTATACCAAAGACCAATATAA-----------TCACTAAGATGCGTAA--CGCCCATAC----ATTGGTT-TGCAATATGCAGCTCGTTTTTT-GGTGGCGACGAAAATTCCGCTCTCTCCGCTCGCACAGAGTTGAGAGCGTAA-AAATCTAAAA---------
droFic1 scf7180000454123:19679-19747 + C-----GTAATGACCGTTCACTGCCGAAGAATATTCCCCAAAATGAACCAGTAAGTAAAAAGTGTT---A-AT----TTT-TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302028:219-358 + GCAA--------------------------------------------------AAAAAATATTTC---GT--TTTTT-----------TGAAAAAAAAA--------------------------------------------------------------------------GGT-----ATATAACCAAAGAC-AATAGAT-----------TTAACAAGATGCCTCA--CGACCATAC----ATTCGTTTTGCAATATGAGGCTGCATTTTT-GATGGCAACGACAATCGCGT-----------------------------------TCTAAAA---------
droAna3 scaffold_13280:606650-606693 + TA---------------------TCAAAGAAAAATGATTAAAATGAGCTTGTGCGCAAAAGATCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_42:456953-456990 + T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCAATATAAAGGTAATTTTTTGGATGAGT-------------------------------------------------TTTATT---------
droWil2 scf2_1100000004577:170699-170785 - T-----------------------CAAAACAAAATTGTAGAAAAAAACCTGTCAATAAAATATTGT---T-TT----CTT-TTTTTTTTT------------------------TAACA--------TATCACTTTTT-----------------------TGCTACAAAATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12728:256122-256251 - AAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCAGA--CTAACACCAAAGAC-AATATAA-----------ACACTAAGAACAGTAA--CGCC-AAAC----AACAAAATACTACTATACAGCTTAATTTTTTGAA---------AATTTCTCTCTCACA-----------GCCGAGAGAACAAAAAAGCTAAAA---------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATGGTCGCAATGACCGTTCTGTGTCGAAGAAAACTTCTCAAAATGAACTTGTAAGTAAAATATTTT---A-TT----TTG-TTGTGTCCT------------------------AACAA--------TAGCCCCT-TT-----------------------TGATAATAAATATGGCATACGGTCAGACCAAAGAC-ACTAGTAT------------AACAAGATGCGTAA--CGGCCA-AC----ATTGGTTTAGCACTATGCAGTTAATTTTTTCGGTGATT---TTTTTTGCCCTCCGTCCGCTCGCTTA-CGCTGAGAGCGTAGGAAATCTAAAA---------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................T------------AACAAGATGCGTAA--CGGC...............................................................................................................1920184.70369400003686008000000000
.........................................................................................................................................................................................................................AACAAGATGCGTAA--C..................................................................................................................152017.303460000000000346000000
.........................................................................................................................................................................................................................AACAAGATGCGTAA--CGGCCA-A...........................................................................................................2114.00400004000000000000
............................................................................................................................................................................................................T------------AACAAGATGCGTAA--CGGCCA-A...........................................................................................................2213.00300002000100000000
...............GTTCTGTGTCGAAGAAAACTTCTCAA...................................................................................................................................................................................................................................................................................................................2612.00201100000000000000
...................TGTGTCGAAGAAAACTTCTCAAAATGAACT...........................................................................................................................................................................................................................................................................................................3012.00200000011000000000
...................TGTGTCGAAGAAAACTTCTCAAAATGAAC............................................................................................................................................................................................................................................................................................................2912.00200000020000000000
.....CGCAATGACCGTTCTGTGTC...................................................................................................................................................................................................................................................................................................................................2012.00200200000000000000
.................TCTGTGTCGAAGAAAACTTCTCAAAA.................................................................................................................................................................................................................................................................................................................2612.00200000020000000000
............................................................................................................................................................................................................T------------AACAAGATGCGTAA--CG.................................................................................................................17201.6533000000000033000000
...............GTTCTGTGTCGAAGAAAAC..........................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
.................TCTGTGTCGAAGAAAACTTCTCAAA..................................................................................................................................................................................................................................................................................................................2511.00100000000010000000
............................................................................................................................................................................................................T------------AACAAGATGCGTAA--CGGCCA-AC----A.....................................................................................................2411.00100000000010000000
...........................................TGAACTTGTAAGTAAAATATTTT---A-TT----...............................................................................................................................................................................................................................................................................2611.00100000001000000000
.........................................................................................................................................................................................................................AACAAGATGCGTAA--CGGCCA-AC----ATT...................................................................................................2511.00100000000001000000
.........................................................................................................................................................................................................GTAT------------AACAAGATGCGTAA--CGGCC..............................................................................................................2331.00300200000001000000
.......................TCGAAGAAAACTTCTCAAAATGAACTT..........................................................................................................................................................................................................................................................................................................2711.00100000001000000000
.................................................................................................................................................................................................................................................................................................................CTCGCTTA-CGCTGAGAGCGTAGG...................2311.00100000000001000000
........................................................................................................................................................................................................................................................................................................CTCCGTCCGCTCGCTTA-CGCTGAGA..........................2511.00100000000100000000
...............GTTCTGTGTCGAAGAAAACTTCTCAAAAT................................................................................................................................................................................................................................................................................................................2911.00100010000000000000
...........GACCGTTCTGTGTCGAAGAAAACTT........................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
...GTCGCAATGACCGTTCTGTGTCGA.................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
...............GTTCTGTGTCGAAGAAAACTT........................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.........................................................................................................................................................................................................GTAT------------AACAAGATGCGTAA--CGGCCA-AC----A.....................................................................................................2711.00100000000000010000
.........................................................................................................................................................................................................................AACAAGATGCGTAA--CGGCCA-AC----......................................................................................................2211.00100001000000000000
.....CGCAATGACCGTTCTGTGTCGAAG...............................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
.........................................................................................................................................................................................................................AACAAGATGCGTAA--CGGCCA-AC----A.....................................................................................................2311.00100001000000000000
.......................TCGAAGAAAACTTCTCAAAATGAAC............................................................................................................................................................................................................................................................................................................2511.00100000001000000000
............................................................................................................................................................................................................T------------AACAAGATGCGTAA--CGGCCA-AT----......................................................................................................2311.00100000000010000000
.........................................................................................................................................................................................................................AACAAGATGCGTAA--CGGCCA-AC----AT....................................................................................................2411.00100000000001000000
...............GTTCTGTGTCGAAGAAAACTTCTCAAA..................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
.........................................................................................................................................................................................................GTAT------------AACAAGATGCGTAA--C..................................................................................................................1940.75300003000000000000
.........................................................................................................................................................................................................GTAT------------AACAAGATGCGTAA--CGGC...............................................................................................................2230.67200002000000000000
.........................................................................................................................................................................................................GTAT------------AACAAGATGCGTAA--CGGCCA-............................................................................................................2430.67200000000101000000
.......................................................................................................................................................................................................TAGTAT------------AACAAGATGCGTAA--CGGCCA-............................................................................................................2630.33100000000000010000
........................................................................................................................................................................................................................................................TGGTTTAGCACTATGCA...................................................................................1730.33100000000001000000
.............................................................................................................................................................................................................................................................................................................TCCGCTCGCTTA-CGCTGAGAGCGTA.....................25200.25500000000500000000
.............................................................................................................................................................................................................................................................................................................................TGAGAGCGTAGGAAATC..............1780.13100000000001000000
.............................................................................................................................................................................................................................................................................................................................TGAGAGCGTAGGAAATCTAAAA---------2280.13100000000010000000
.............................................................................................................................................................................................................................................................................................................................TGAGAGCGTAGGAAAT...............1680.13100000000001000000
............................................................................................................................................................................................................................................................................................................GTCCGCTCGCTTA-CGCTGAGA..........................21200.05100000010000000000
............................................................................................................................................................................................................T------------AACAAGATGCGTAA--CGGCCA-AA----......................................................................................................23200.05100000000010000000
.....................................................................................................................................................................................................................................................................................................................CTTA-CGCTGAGAGCGTA.....................17200.05100000000001000000
..........................................................................................................................................................................................................................ACAAGATGCGTAA--CGG................................................................................................................16200.05100000000001000000
droSec2
ATTGTCGCAATGACCGTTCTGTGTCGAAGAAAACTTCTCAAAATGAACTTGTAAGTAAAATATGTT---A-TT----TTG-TTGTGTCCT------------------------AAACA--------TAGCCCCT-TT-----------------------TGATAATAAATATTGCATACGGTCAGACCAAAGAC-ACTAGAAT------------AACAAGATGCGTAAAGCGGCCA-AC----ATTGGTTTAGCACTATGCAGTTAATTTTTTCGGTGACGGCCAAAATTGCCCTCCGTCCGCTCGCTTA-CGCAGAGAGCGTAAGAAATCTAAAA---------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................ATTGCATACGGTCAGACCAAA...........................................................................................................................................................2111.0010010
......GCAATGACCGTTCTGTGTCGAAGA..............................................................................................................................................................................................................................................................................................................................2411.0010010
..TGTCGCAATGACCGTTCTGTGTCGAAGA..............................................................................................................................................................................................................................................................................................................................2811.0010010
....................................................................................................................................................................................................................................................................................................TGCCCTCCGTCCGCTCCA......................................1890.1111000
dm3
ATTGTCGCAATGACCGTTCTGTGTCGAAGAAAACTTCCCAGAATGATCTTGTAAGTAAAATATGTTCTTA-TT----TTG-TTGTGTTTT------------------------AAACA--------TAACCCTT-TT-----------------------TGATCATAAATATAACATACTGTCAGACCAAAGAC-ATTAGAAT------------ACCAAGATGTGTAA--CGGCCATACAAGCATTGGTTTTGCACAATGCAGCTACTTTTTTTGGTGACT----------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................TCGAAGAAAACTTCCCAGAATGATCT...........................................................................................................................................................................................................................................................................................................26110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000002000000000000000000000000000000001000300000000000001000
............................................................................................................................................................................................................T------------ACCAAGATGTGTAA--CGGCCATACAA........................................................................................................26110.00100001000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................T------------ACCAAGATGTGTAA--CGGCCATACAAGC......................................................................................................2819.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040012200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................T------------ACCAAGATGTGTAA--CGGCCATACAAG.......................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000201010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GAAAACTTCCCAGAATGAT.............................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................T------------ACCAAGATGTGTAA--CGGCCATACA.........................................................................................................2514.0040000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
................................ACTTCCCAGAATGATCTT..........................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000001000000000000000000000000000000000000
...........................AGAAAACTTCCCAGAATGATCT...........................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TCGAAGAAAACTTCCCAGA..................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..............CGTTCTGTGTCGAAGAAAACTTCCCA....................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TCGAAGAAAACTTCCCAGAATGATCTTGT........................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................AGAAT------------ACCAAGATGTGTAA--CGGC...............................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TAGAAT------------ACCAAGATGTGT.......................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GTCGAAGAAAACTTCCCAGAATGATCT...........................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................ATGTTCTTA-TT----TTG-TTGTGTT....................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........GACCGTTCTGTGTCGAAGAAA............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GAAAACTTCCCAGAATGATCTTGTTT......................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................T------------ACCAAGATGTGTAA--CGGC...............................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TGACCGTTCTGTGTCGAAGAAAACTT........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.........................................AATGATCTTGTAAGTAAAATATGT...........................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TCGCAATGACCGTTCTGTGTCGAAGAAA............................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TGTCGAAGAAAACTTCCCAGAATGA..............................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AATGACCGTTCTGTGTCGAAGAAAAC..........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GTTCTGTGTCGAAGAAAACTTCCC.....................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
.............................AAAACTTCCCAGAATGAT.............................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................C-ATTAGAAT------------ACCAAGATGTGT.......................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................ATACAAGCATTGGTTTTGCAC.........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........AATGACCGTTCTGTGTCGAAGAAAACT.........................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................ACTTCCCAGAATGATCTTGTAAGTAAA.................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................T------------ACCAAGATGTGTAA--CGGCCATAC..........................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.TTGTCGCAATGACCGTTCTGT......................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GACCGTTCTGTGTCGAAGAAAAC..........................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TTCTGTGTCGAAGAAAACTTCCCA....................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TGTCGCAATGACCGTTCTGTGTC...................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TCGCAATGACCGTTCTGTGTCGAA................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............ACCGTTCTGTGTCGAAGAAAACTTCCCA....................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..TGTCGCAATGACCGTTCTGTGTCGAA................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TTGTCGCAATGACCGTTCTGTGTCGAA................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CGAAGAAAACTTCCCAGA..................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TATAACATACTGTCAGACCAAAGAC-A......................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TCGAAGAAAACTTCCCAGAATGATCTT..........................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
....TCGCAATGACCGTTCTGTGTCGAAGAA.............................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................ACCCTT-TT-----------------------TGATCATAAATATAACA..........................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CAATGACCGTTCTGTGTCGAAGAAAAC..........................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................T------------ACCAAGATGTGTAA--CGGCCATACAAGCA.....................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................AAGATGTGTAA--CGGCCATACA.........................................................................................................21100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CTGGTCGCTGTATTTATTCGATATTT-------CGGCTCAAACGTAACTAGCACG-AAACTAGTTG---G-TT----TTG-TT---------------------------------------------AGCCGTT-TTCTGATATGAACTATCAACTCTTTG----------G-----TTTGGTCAGACCAAAGAC-ACT-GAAT------------AATAAGATGCGTAA--CGGCCATAA----ATTGGTTTTGCACTATGCCACTT---TTTT-GTTGGTGGCAGTAATTGCTCTCTTCCCGCTCGCATAAAATTGAGAGCATAA-AAATCTAAAA---------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................AATAAGATGCGTAA--CGGCCATAA----ATTG..................................................................................................2730.3311000000
droYak3
T-GGTCG---TGTCAGTTTTGGGCCGAAAGG--CTTCCT----TCTGCCTGTAACAGAAGTATAGT---A-TA----TTCTACGAGTAAT------------------------AAATATAA------ATACACT-TT-----------------------ATTTAAATGATTTTGCATAGTGTAAGACCAAAGAC-ATTATAAT------------AACAAGATGCGTAA--CGGCCATAC----ATTGGCTTTGCACTATGCAGCCACTTTTTT-GGTGACGACCAAAATTGCTCTCTTTTCGCTCGCCTAAAATAGAGAGCGTTA-AAATCTAAAA---------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................TCTTTTCGCTCGCCTAAAATAGAGAG.........................2622.00400000000004
.........................................................................................................................................................................................................................................................................................................TCTTTTCGCTCGCCTAAAATAGAGA..........................2521.50300000000003
.........................................................................................................................................................................................................................................................................................................TCTTTTCGCTCGCCTAAAATAGAGAGC........................2720.50100000000001
...............................................................................................................................................................................................................................................TAC----ATTGGCTTTGCACTATGCAGCCACT.............................................................................2820.50101000000000
.......................................................................................................................................................................................................TATAAT------------AACAAGATGCGTAA--CGGCCA.............................................................................................................26200.10201000010000
.......................................................................................................................................................................................................TATAAT------------AACAAGATGCGTAA--CGGCC..............................................................................................................25200.05100100000000
........................................................................................................................................................................................................ATAAT------------AACAAGATGCGTAA--CGGCC..............................................................................................................24200.05100000010000
droEug1
GTTATCGTAATGACCGTTCACTGCCGAAGAATATTACCCATAATGAGCAAGTGAGTAAAATTTTGT---C-TT----GGT-AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AAGC------------------------------TTCTC----------------------------------TATTT-----------AAACAAAAACAAACATGTAAATAAGATGTAAAAATATATAG------CA-----------------------AAGTAAGTGATAG----T------ACAGTAAGGAT-AGTAAAATAACGAAAACACCACTAAGATACGTAA--TGGCCATAC----AATGGTTTTGCAATATGCAGCTATATTTTTGTGTGGTGCCGAAATTTACGCTCTTTTCACTCGCGTAACGATGAGAACTTG--GAGTTTAAAA---------SizeHit CountTotal NormTotal
No Reads
droTak1
CTTTTGCTGTTAACG----------------------------------------------------------------------------------------------------------------------------------------------------------------GTATAGGGTAAAAGTAAAGACCAATATAA-----------TCTCTAAGATGAGTAA--CGGCCATAC----ATTCGTTTTGCAATATCCAGCCTGATTTTT-GGTGGTGACGAAAATTTCGCTCTTTCCGCTCGCTCAAAGTTGAGAGCGAAA-AAATCAAAAATATATATGTSizeHit CountTotal NormTotal
No Reads
droEle1
ATTCACGTAATGACCGTTCACTGCCTAAAAATATTCCCCAGATTGAACCAGTAAGTAAAACTTTCT---A-TT----TTA-TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TTTT------------------------------------------------AAATAAATTAACCAATTT-TT----CTG-TTGTTTTTTC-----------------------AAAAA--------TAATGC------TGAAAT----------------CAACAGTAAATGT----TA-CGTTATACCAAAGACCAATATAA-----------TCACTAAGATGCGTAA--CGCCCATAC----ATTGGTT-TGCAATATGCAGCTCGTTTTTT-GGTGGCGACGAAAATTCCGCTCTCTCCGCTCGCACAGAGTTGAGAGCGTAA-AAATCTAAAA---------SizeHit CountTotal NormTotal
No Reads
droFic1
C-----GTAATGACCGTTCACTGCCGAAGAATATTCCCCAAAATGAACCAGTAAGTAAAAAGTGTT---A-AT----TTT-TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GCAA--------------------------------------------------AAAAAATATTTC---GT--TTTTT-----------TGAAAAAAAAA--------------------------------------------------------------------------GGT-----ATATAACCAAAGAC-AATAGAT-----------TTAACAAGATGCCTCA--CGACCATAC----ATTCGTTTTGCAATATGAGGCTGCATTTTT-GATGGCAACGACAATCGCGT-----------------------------------TCTAAAA---------SizeHit CountTotal NormTotal
No Reads
droAna3
TA---------------------TCAAAGAAAAATGATTAAAATGAGCTTGTGCGCAAAAGATCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droPer2
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCAATATAAAGGTAATTTTTTGGATGAGT-------------------------------------------------TTTATT---------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
T-----------------------CAAAACAAAATTGTAGAAAAAAACCTGTCAATAAAATATTGT---T-TT----CTT-TTTTTTTTT------------------------TAACA--------TATCACTTTTT-----------------------TGCTACAAAATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCAGA--CTAACACCAAAGAC-AATATAA-----------ACACTAAGAACAGTAA--CGCC-AAAC----AACAAAATACTACTATACAGCTTAATTTTTTGAA---------AATTTCTCTCTCACA-----------GCCGAGAGAACAAAAAAGCTAAAA---------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................TAA-----------ACACTAAGAACAGTAA--CGCC-AAAC----......................................................................................................2718.008000100000000000000000000002100001001000000100000100000000000000
.........................................................................................................................................................................................................TAA-----------ACACTAAGAACAGTAA--CGCC-AAAC----A.....................................................................................................2813.003001000000000000000000000000100000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................TACAGCTTAATTTTTTGAA---------AATTTC.....................................................2511.001000000000000000000000000100000000000000000000000000000000000000
.........................................................................................................................................................................................................TAA-----------ACACTAAGAACAGTAA--CGCC-AAAT----......................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................A-----------ACACTAAGAACAGTAA--CGCC-A.............................................................................................................2211.001000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TACTACTATACAGCTTAATTTTTTGAA---------...........................................................2711.001000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................TAA-----------ACACTAAGAACAGTAA--CGCC-AAA...........................................................................................................2611.001000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................................................................CACA-----------GCCGAGAGAACAAAA..................1960.171000000000000000000000000001000000000000000000000000000000000000

Generated: 05/19/2015 at 12:14 AM