ID:

dsi_28036

Coordinate:

3r:4526836-4526985 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-22.1	-22.0	-22.0

Flybase annnotation

Antisense to intron [3r_4515921_4529523_-]

No Repeatable elements found

Sense Strand Reads

TAATCTACAAGTGTTGGTCGAGCGAGTGTTATCTGATAAGCAGACGAAAGGTAAATATAGCGCACAGGCACAGGCACAGATACAGATACGGATACCTGGGAAACTGGAGGCCCAGACCCCTAACAGCGGGTTATGCAATCGTTAGTAATTAAAACCCTATCCATTGACGCAAACTGGGCATGTGCCAAATATCACACCGCAGCGAAACAAATCGAAGTCCTTGTCGAGTGCAGTCTGTGTGCTGGATGTG **********************************************************************************.....((.(((((((....))))..((((((((((((...)).))))........(((((((...((......))...)))))))....))))))..)))))..************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M025 embryo	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M023 head
....................................................................................GATACGGATACCTGGGAAACTGGAG.............................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0
...................................................TAAATATAGCGCACAGGCACAGATACAGA..........................................................................................................................................................................	29	2	1	1.00	1	1	0	0	0	0	0	0
...........TGTTGGTCGAGCGAGTGTTATCTGA......................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................TGACGCAAACTGGGCATGTGCCAA..............................................................	24	0	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................GAGTGCAGTCTGTGTGCTGGA....	21	0	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................................TGACGCAAACTGGGCATG....................................................................	18	0	1	1.00	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................TCCTTGTCGAGTGCAGTCTGTGTGCTGGA....	29	0	1	1.00	1	1	0	0	0	0	0	0
..................................GATAAGCAGACGAAA.........................................................................................................................................................................................................	15	0	2	1.00	2	0	0	2	0	0	0	0
.......CAAGTATTGGTCGATCG..................................................................................................................................................................................................................................	17	2	7	0.14	1	0	0	0	0	1	0	0
....................AGCGAGTTTTATCGGGTAA...................................................................................................................................................................................................................	19	3	8	0.13	1	0	0	1	0	0	0	0
......................................................................................................................................GGAATCGTTAGTAAT.....................................................................................................	15	1	11	0.09	1	0	0	0	0	1	0	0
................................................................................................................................................................................................CATACCGCAGCGAAA...........................................	15	1	12	0.08	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................GCGAAGTCCTTGTCGGG......................	17	2	20	0.05	1	0	0	0	0	1	0	0
.............................................................................AGATACAGATACGGATAC...........................................................................................................................................................	18	0	20	0.05	1	0	0	0	1	0	0	0
...........................................................................ACAGATACAGATACGGAT.............................................................................................................................................................	18	0	20	0.05	1	0	0	0	0	0	0	1

Anti-sense strand reads

ATTAGATGTTCACAACCAGCTCGCTCACAATAGACTATTCGTCTGCTTTCCATTTATATCGCGTGTCCGTGTCCGTGTCTATGTCTATGCCTATGGACCCTTTGACCTCCGGGTCTGGGGATTGTCGCCCAATACGTTAGCAATCATTAATTTTGGGATAGGTAACTGCGTTTGACCCGTACACGGTTTATAGTGTGGCGTCGCTTTGTTTAGCTTCAGGAACAGCTCACGTCAGACACACGACCTACAC ************************************************************.....((.(((((((....))))..((((((((((((...)).))))........(((((((...((......))...)))))))....))))))..)))))..**********************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O002 Head	O001 Testis	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	M023 head	SRR618934 dsim w501 ovaries
.............................................................................................TGGACCCTTTGACCTCCG...........................................................................................................................................	18	0	1	9.00	9	5	4	0	0	0	0	0
......................................................................................................................................................................................ACGAGTTAGAGTGTGGCGTCG...............................................	21	3	1	1.00	1	0	0	0	0	0	0	1
.............................ATAGACTATTCGTCTGCTTTCCATT....................................................................................................................................................................................................	25	0	1	1.00	1	0	0	1	0	0	0	0
.......................................................ATATCGCGTGTCCGTGTCTATGTCTA.........................................................................................................................................................................	26	2	1	1.00	1	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................TCAGGAACAGCTCACGTCAGACACACGA.......	28	0	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................................................................................................AGTGTGGCGTCGCTTTGTTTA......................................	21	0	1	1.00	1	0	0	0	0	1	0	0
..................................................................................GTGTATGCCTATGGA.........................................................................................................................................................	15	1	6	0.83	5	0	0	0	5	0	0	0
...................................................................CGTGTCCGTGTCTATGTCTAT..................................................................................................................................................................	21	0	2	0.50	1	0	0	1	0	0	0	0
...............................................................................TATGTCTATTCCTATGG..........................................................................................................................................................	17	1	4	0.25	1	0	0	0	1	0	0	0
........................................................................................................................................................................................................................CAGGAACAGCACTCGTC.................	17	2	19	0.05	1	0	0	0	1	0	0	0
.................................................................................AGTCTATGCCGATGGA.........................................................................................................................................................	16	2	20	0.05	1	0	0	0	1	0	0	0
.................................................................................GGTGTATGCCTATGGA.........................................................................................................................................................	16	2	20	0.05	1	0	0	0	1	0	0	0
.................................................................................................................TCTGGGGACTGTAGCC.........................................................................................................................	16	2	20	0.05	1	0	0	0	0	1	0	0

Generated: 04/24/2015 at 09:23 AM