ID:

dsi_28024

 Coordinate:

3l:22625380-22625529 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-49.8 -49.6 -49.6

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dsi_28024  3l:22625388-22625402 +
  2. x:14932390-14932404 +
star

Sense Strand Reads

ATGTCTGCCTGCGTCACCTATGTTCCGCAGCGCGTACTTTAGCGAGTTTTTTCATTCTTTACTGTTGTTGAATTGTCCCGTTTCCGAGTCGATTACGCACGATTTCAGCCTTAATCCGTTCGGTTCTCCGCGGGTGCAGCCCTCGGGCTGAATTCACAAAGTTGAGGGACACGGCTCTTCCGGCGGAGGGGCCCATCCCCCTGCCGATTGGGCTTCCCGGGACAGTCGCCGAAGCGTAACCGAAAACTAT
**************************************************..........(((.((((.(((((..(((((..(((((..(((((.((.........))..)))))..)))))......)))))..(((((....)))))))))))))))))...((((...(((((((((...)))))))))..)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
.............................................................................................................................................................................................................GATTGGTCTTCCAGGGAC........................... 18 2 4 1.00 4 3 1 0 0
..........................................................TTACTGTTGTTGAAT................................................................................................................................................................................. 15 0 2 0.50 1 0 0 1 0
...........................................................................................................................................................................................................ACGATTGGTCTTCCAGGGAC........................... 20 3 3 0.33 1 0 1 0 0
...............................................................................................................................CCGCGGGTGCAGATCTTGG........................................................................................................ 19 3 20 0.05 1 0 0 0 1

Anti-sense strand reads

TACAGACGGACGCAGTGGATACAAGGCGTCGCGCATGAAATCGCTCAAAAAAGTAAGAAATGACAACAACTTAACAGGGCAAAGGCTCAGCTAATGCGTGCTAAAGTCGGAATTAGGCAAGCCAAGAGGCGCCCACGTCGGGAGCCCGACTTAAGTGTTTCAACTCCCTGTGCCGAGAAGGCCGCCTCCCCGGGTAGGGGGACGGCTAACCCGAAGGGCCCTGTCAGCGGCTTCGCATTGGCTTTTGATA
**************************************************..........(((.((((.(((((..(((((..(((((..(((((.((.........))..)))))..)))))......)))))..(((((....)))))))))))))))))...((((...(((((((((...)))))))))..)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
.......................................................................TAACTGGGCAAAGGCT................................................................................................................................................................... 16 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................AAGGGCCAAGTCAGCGG.................... 17 2 12 0.33 4 0 4 0 0 0 0 0
...................................................................................................................................................................................................AGGGGTACAGCTAACCC...................................... 17 2 9 0.22 2 0 0 0 2 0 0 0
........................................................................................................AGTCCAAATTAGGCAAGC................................................................................................................................ 18 2 5 0.20 1 0 0 0 0 1 0 0
...........................................................................................................................................................................................................GGCTAACTCGATGGGGCCT............................ 19 3 7 0.14 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................GGAGATGGCTAACCCGA.................................... 17 2 8 0.13 1 0 0 0 0 0 0 1
.....................................................................................................................................CACGTCGGGAGCCCA...................................................................................................... 15 1 8 0.13 1 0 0 1 0 0 0 0
...................................................................................................................GGCAAGCCAGGAGGTGC...................................................................................................................... 17 2 10 0.10 1 1 0 0 0 0 0 0
..............................................................................................................AATTAGCCAAGCCTGGAGG......................................................................................................................... 19 3 13 0.08 1 0 0 0 0 0 1 0
.......................................................................................................AAGTCGCAAATAGGCAAGGC............................................................................................................................... 20 3 13 0.08 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................ACGGCTAACCAGAAAG................................. 16 2 20 0.05 1 0 0 1 0 0 0 0
.......................................................................................................................AGCCCAGTGGCTCCCACG................................................................................................................. 18 3 20 0.05 1 0 0 1 0 0 0 0
...........................................................................................................................................................................................................GGCGAAACCAAAGGGCCCT............................ 19 3 20 0.05 1 0 0 1 0 0 0 0
................................................................................................................................................................................GAAGGCCGCTTGCCCG.......................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:22625330-22625579 + dsi_28024 ATGTCTGCCTGCGTCACCTATGTTCCGCAGCGCGTACTTTAGCGAGTTTTTTCATTCTTTACTGTTGTTGAATTGTCCCGTTTCCGAGTCGATTACGCACGATTTCAGCCTTAATCCGTTCGGTTCTCCGCGGGTGCAGCCCTCGGGCTGAATTCACAAAGTTGAGGGACACGGCTCTTCCGGCGGAGGGGCCCATCCCCCTGCCGATTGGGCTTCCCGGGACAGTCGCCGAAGCGTAACCGAAAACTAT
droSec2 scaffold_1133:5656-5715 - --------------TA-------------------------TCGGGTCTCTTCATTCTTAACGACACTTTATTTTTTTTATTTTCGATTCGTTTTCGCA-------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4842:78368-78405 + --------------CACCTGTGTTACGCAGCGCAGATTTTAGCAAACCTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000486278:4765-4774 + GTGTCTGACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATGTCTGCCTGCGTCACCTATGTTCCGCAGCGCGTACTTTAGCGAGTTTTTTCATTCTTTACTGTTGTTGAATTGTCCCGTTTCCGAGTCGATTACGCACGATTTCAGCCTTAATCCGTTCGGTTCTCCGCGGGTGCAGCCCTCGGGCTGAATTCACAAAGTTGAGGGACACGGCTCTTCCGGCGGAGGGGCCCATCCCCCTGCCGATTGGGCTTCCCGGGACAGTCGCCGAAGCGTAACCGAAAACTATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................TTACTGTTGTTGAAT.................................................................................................................................................................................1520.50100000010000000000
droSec2
--------------TA-------------------------TCGGGTCTCTTCATTCTTAACGACACTTTATTTTTTTTATTTTCGATTCGTTTTCGCA-------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droEre2
--------------CACCTGTGTTACGCAGCGCAGATTTTAGCAAACCTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droEle1
GTGTCTGACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 07:33 PM