dsi_28020

ATTTGATCGCCGGTCGTTGTTAACTGGGAAAACGTGCGTAGGGAGACGGCACTCGTGAGATCTCGATATCAAATGCCAATCGCGACGGAATGACGGTGGACTTTTTCGCATTCGGCGACACTTAGCGTTTGCCTAACCAATTGAAGCCGATAGCCTGCTAAATTTATCAAACTAATTTGTTTACCGCTCTCTGCTTTCAGATTAACAACTTGATCTGCCGATCTGCGAGCTGTGATCAGTGATCTGCTAT ************************************************..((((((.....................))))))((((..((((((((((......((..(((((..((.((...(((.....))).)).))..)))))..))........................)))))))).)))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries
......................................................................................................................................................................................................ATATTAACAACTTGATCTGC................................	20	1	1	2.00	2	2	0	0	0	0
......................................................................................................................................................................................................................CTGCCGATCTGCGAGCTGTGAT..............	22	0	1	1.00	1	1	0	0	0	0
............................................................................................................................................................................................................ACAACTTGATCTGCCGATCTGCGAGCT...................	27	0	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................AACAACTTGATCTGCCGATCTGCGAGCT...................	28	0	1	1.00	1	1	0	0	0	0
........................................................................................................................................................................................................ATTAACAACTTGATCTGCC...............................	19	0	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................ATATTAACAACTTGATCTGCCGAT............................	24	1	1	1.00	1	1	0	0	0	0
.............................................................................................................................................................................................................CAACTTGATCTGCCGATCTGCGAGCT...................	26	0	1	1.00	1	1	0	0	0	0
........................................................................................AATGTCGGTGGGCTTTTTTGCA............................................................................................................................................	22	3	5	0.20	1	0	0	1	0	0
................................................................................................................................................................................................................................GCGAGCTGTGATCCG...........	15	1	8	0.13	1	0	0	0	1	0
............GTCATTGTAAACTGGGA.............................................................................................................................................................................................................................	17	2	14	0.07	1	0	0	1	0	0
...................................................................................................................CGACTCTTAGCGTTGG.......................................................................................................................	16	2	18	0.06	1	0	0	0	1	0
.............TCGATGATGACTGGGAAAAC.........................................................................................................................................................................................................................	20	3	19	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................CCTATCTTCGCGCTGTGA...............	18	3	20	0.05	1	0	1	0	0	0
..............................................CGGCAGTCGAGAGATATCG.........................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	1

TAAACTAGCGGCCAGCAACAATTGACCCTTTTGCACGCATCCCTCTGCCGTGAGCACTCTAGAGCTATAGTTTACGGTTAGCGCTGCCTTACTGCCACCTGAAAAAGCGTAAGCCGCTGTGAATCGCAAACGGATTGGTTAACTTCGGCTATCGGACGATTTAAATAGTTTGATTAAACAAATGGCGAGAGACGAAAGTCTAATTGTTGAACTAGACGGCTAGACGCTCGACACTAGTCACTAGACGATA ************************************************..((((((.....................))))))((((..((((((((((......((..(((((..((.((...(((.....))).)).))..)))))..))........................)))))))).)))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs
TAAACTCGTGGCCAGCATC.......................................................................................................................................................................................................................................	19	3	12	0.08	1	1	0	0
.....................................CAGCCCTCTGCAGTGA.....................................................................................................................................................................................................	16	2	20	0.05	1	0	1	0
..............................................................AGCTATAGTCTACGGTGAC.........................................................................................................................................................................	19	3	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2r:13223990-13224239 -	dsi_28020	ATTTGATCGC--------CGG--TCGTTGTTAACTGGGAAAACGTGCG--TAGGGAG--ACGGCACTCGTGAGATCTCG-ATATCAAATGCC------------AATCGC---GA------CGGAATGACGGTGGACTT-----TTTCGCATTCGGCGACACTTA------GCGTTTGCCTAACCAATTGAAG------------------C------------------------CGATAGCCTGCTAAATTTATCAAACTAATTTG-----TTTACCGCT-----CTCTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGATCT--GC--G--A--GCTGTGATC-----AGTGATCTGC--T-----AT
droSec2	scaffold_1:10049596-10049844 -		ATTTGATCGC--------CGG--TCGTTGTTAACTGAGAAAACGTGCG--TAGGGAG--ACGG-ACTCGTGAGATCTCG-AAATCAAATGCC------------AATCGC---GA------CGGAATGACGGTGGACTT-----TTTCGCATTCGGCGACACTTA------GCGTTTGCCTAACCAATTGAAG------------------C------------------------CGATAGCCTGCTAAATTTATCAAACTAATTTG-----TCTACCGCT-----GTCTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGATCT--GC--G--A--GCTGTGATC-----AGTGATCTGC--T-----AT
dm3	chr2R:12551659-12551910 -		ATTTGATCGC--------CGG--TCGTTGTTAACTGGGAAAACGTGCG--TAGGGAG--ACGG-ACTCGTGAGATCTCG-AAATCAAATGCC------------CATCGC---AA------CGGAATGACGGTGGACTT-----TTTCGCATTCGGCGACACTTA------GCGTTTGCCTAACCAATTGAAGCCA----------------------------------------AGATAGCCTGCTAAATTTATCAAACTAATTTG-----TTTACCGCT-----CTCTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGATCT--GT--G-GA--GCCGTAATC-----AGTGATCTGC--T-----AG
droEre2	scaffold_4845:13308320-13308555 +		ATTTGATCGC--------CGG--TCGTTGTTAACTGGGAAAACGTGCG--TAGGGAG--ACGG-ACTCATGAGATCTCG-AAATCAAATGCC------------AATCTC---GA------CGGGATGACTGTGAACTT-----TTTCGCATTC-GCGACACTTA------GCGTTTGCCTAACCAATTGATG------------------C------------------------TGATAGACTGCTAAATTTATCAAAC-----------------CGCT-----CACTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGATCT--GC--G--A--TCTGTGATC-----TGTGATCTGC--T-----AT
droYak3	2R:16429438-16429666 +		ATTTGATCGC--------CGG--TCGTTGTTAACTGGGAAAACGTGCG--TAGGGAG--ACGG-ACTCGTGAGATCTCG-AAATCAAATGCC------------AATTTC---GG------CGGGATGACAGTGGACTTT----TTTCGCATTCGGCGACACTTA------GCGTTTGCCTAACCAATTGAAG------------------C------------------------TGATAGACTGCTAAATTTATCAAACTAATTTG-----TTTACCGCT-----CTCTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGATCT--GT--G--A--T---------------------------------
droEug1	scf7180000409672:2611738-2611961 +		ATTTGATCGC--------CAG--TCACTGTTAACTGGGAAAACGTGCG--TAGGGAG--ACTG-ACTCGTGAGATCTCGAAAATCAAATGTC------------AAACTC---GA------CGGGATGACGATGGACAT-----TT-----------------TC------ACGTTTGTCTAACCAATTGATG------------------C------------------------CGATAGCCTGCTAAATTTATCAAACTAATTTA-----TTTACCGCT-----CTCTGCTTTCAGATTA---------ACA--GCTTGATCTGCCGATCT--GT--G--A--T-------------------CAGC--CAGCCACC
droBia1	scf7180000301506:1938376-1938627 -		ATTTGATCGC--------CGG--CCGCTGTTAACTGGGAAAACGTGTG--TAGGGCG--ACTG-ACTCGTGAGCTCGCG-AAATCAAATGCC------------AATCTC---GC----CTCGGCATGACGGTGGACAT------TTCGCAGGCGGCGACACTTG------CCGTTTGCCCAACCAATTGAAG------------------C------------------------CGATAGCCTGCTAAATTTATCAAACTAATTTG-----TTCACCGCT-----CTCTGCTTTCAGATTA---------ACA--TCTCCATCTGCCGAGCT--CC--GAGA--TCTGAGATC-----CGAGATCTGA--G-----AT
droTak1	scf7180000415866:330087-330315 -		ATTTGATCGC--------CAG--TCGCTGTTAACTGGGAAAACGTGCG--TAGGGCG--ACTG-ACTCGTGAGATCTCG-AAATCAAATGCC------------AAT--------------CGGGATGACGGTGGACTT------TTCGCATTCGGCGACACTTG------GCGTTTGCCTAACCAATTGAAG------------------C------------------------CGATAGCCTGCTAAATTTATCAAACTAATTTG-----TTTACCGCT-----CTCTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGATCT--GT--G-----------------------ATTCGC--G-----AT
droEle1	scf7180000491214:1843257-1843496 +		ATTTGATCGC--------CGG--CCACTGTTAACTGGGAAAACGTGCG--TAGGGCG--ACTG-ACTCGTGAGATCTCA-AAATCAAATGCC------------AATCTC---GA------CAAGATGACGGTGGACAT------TTCGCATTCGGCGACACTTA------GCGTTTGCCTAACCAATTGAAGCCAGTAGCCAGTAG----C------------------------CGATAGCCTGCTAAATTTATCAAACTAATTTG-----TTTACCGCTG--CTCTCTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGATCT--G-------------------------------------------
droRho1	scf7180000759425:10821-11050 +		ATTTGATCGC--------CGG--TCGCTGTTAACTGGGAAAACGTGCG--TAGGGAG--ACAA-ACTCGTGAGATCTCG-AAATCAAATGCC------------AATCTC---GG------CGGGATGACGGTGGACAT------TTCGCATTCGGCGACACTTA------GCGTTTGCCTAACCAATTGAAG------------------C------------------------CGATAGCCTGCTAAATTTATCAAACTAATTTG-----TTTACCGCT-----CTC-GCTTTCAGATTA---------ACA--ACTTGATCTGCCGATCT--GCC-G--A--TCTG------------------------------
droFic1	scf7180000453851:753552-753799 -		ATTTAATCGC--------CGG--TCGCTGTTAACTGGGAAAACGTGCG--TAGGGAG--ACTG-ACTCGTGAGATCTCG-AAATCAAATGTC------------AAACTC---GACAAACTCGGGATGACGGTGGACTT-----TTTCGCATTCGGCGACACTTA------GCGTTTGCCTAACCAATTGAAG------------------C------------------------CGATAGCCTGCTAAATTTATCAAACTAATTTG-----TTTACCGCT-----CTCTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGATCT--GT--G--A--T-------C-----TGCTATCTGC--T-----AT
droKik1	scf7180000302470:951027-951271 -		ATTTGATCGC--------CGT--TCGCTGTTAACTGGGAAAACGTGCG--TAGGGAGACTCAG-ACTCGTGAGATCGCG-AAATCAAATGCC------------GATTTA---GA----GACGGAATGACTATGGATAT------TTCGCACACGGCGACACTTG------GCGTTTGCCAAACCAATTCAAG------------------C------------------------CG-------TCTAAATTTATCAAACTAATTTG-----TTGACCGCTT--TGCTCTGCTTTCAGATTA---------ACA--GCTTGATCTGCCGATCT--GC--G--A--TCTGCGATC-----GTCGATCTGC----------
droAna3	scaffold_13266:14040480-14040707 +		ATTTGATCGC--------CAG--TCGCTGTTAACTGGGGAAACGTGCG--TAGGGCG--ACAG-ACTCGTG---------AAATCAAAAGCC------------AATCAC---GC------CGGGATGACGGTGGAAAT-----------------------TTA------GCGTTTGCCTAACCAATTGAAG------------------A------------------------CGACAGCCTGCTAAATTTATCAAACTAATTTG-----TTGGCTTCT-----CTCTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGATCG--CCCTG--G--TCTG--CCTAGTCTGGAGATCATC--T-----AT
droBip1	scf7180000396759:2098833-2099045 -		ATTTGATCGC--------CGG--TCGCTGTTAACTGGGGAAACGTGCG--TAGGGCG--ACAG-ACTCGTG---------AAATCAAAAGCC------------AATCAC---GC------CGGGATGACGGTGGAAAT-----------------------TTA------GCGTTTGCCCAACCAATTGAAG------------------A------------------------CGACAGCCTGCTAAATTTATCAAACTAATTTG-----TTTACGGCT-----CTCTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGATCT--CCCTG--G--TCTG--CCTA----------------------GT
dp5	3:19172564-19172813 +		ATTTGAACGC--------AAACTTCGCTGTTAACTGGGAAAACGTGCG--TAGGGCG--AGAG-ACTCGTG---------AAATCAAACGCCGCTGATCTGATCAATCAGGGAGG------CGAGATGATGATGCAAATCTCGAGTTCGCGTTCGGCGACACTTGGCGGTTGCGTTTGCGCAATCAATTGAA----------------------------------------------ACACCCTGCTAAATTTATCAAACTAATTTG-----ATGTCTGC-------TCTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGACCA--CC--T--ATAGCTGTAA---------------------------
droPer2	scaffold_37:173559-173807 +		ATTTGAACGC--------AAACTTCGCTGTTAACTGGGAAAACGTGCG--TAGGGCG--AGAG-ACTCGTG---------AAATCAAACGCCGCTGATCTGATCAATCAGGGAGG------CGAGATGATGATGCAAATCTCGAGTTCGCGTTCGGCGACACTTGGAGGTTGCGTTTGCGCAATCAATTGAA----------------------------------------------ACACCCTGCTAAATTTATCAAACTAATTTG-----ATGTCTGC-------TCTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGACCA--CC--T--ATAGCTGTA----------------------------
droWil2	scf2_1100000004382:745387-745655 +		ATTTGTTAGCGAAAAAAATAA--ACTTTGTTAACTTGGAAAACGTGCGTGTGGGGAG--ATAA-ACTCGTGAGCTGACGCAAAATATATAGC------------AATTGC---TA---------------------TA------ATTTGCATTTGGTGATA-------------TTTGTTCAATCAATTGAAC------------------CTGCCATCACCGCCGACGACGACGACGACAACTTGCTAAATTTATCAGACTAATTTT-----T--------------TTTGCTTACAGATTTAACACACACACA--ACTTGATCAGCCGACGCCACT--G--ATCGCCGGAA--------AGGCTCTGAACGTGCCAAT
droMoj3	scaffold_6496:22424264-22424411 -		C-----------------------------------------------------------------------------------------------------------------------------------------------------GTGCTGCTGCTTTTC------GCGTTTACTTGAGCAATTAATGCCAATGATTTGCAATCGGA------------------------TCGCATCTTGCTAAATTTATCGAACTAATTTGCCATGTTTGCTCTTATCTACGCTACTTACAGATTA---------ACGTGTCTGGATCTCTGGATCG--GC------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

ATTTGATCGC--------CGG--TCGTTGTTAACTGGGAAAACGTGCG--TAGGGAG--ACGGCACTCGTGAGATCTCG-ATATCAAATGCC------------AATCGC---GA------CGGAATGACGGTGGACTT-----TTTCGCATTCGGCGACACTTA------GCGTTTGCCTAACCAATTGAAG------------------C------------------------CGATAGCCTGCTAAATTTATCAAACTAATTTG-----TTTACCGCT-----CTCTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGATCT--GC--G--A--GCTGTGATC-----AGTGATCTGC--T-----AT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................................................................................................................................................................................................................................................................................................................................CTGCCGATCT--GC--G--A--GCTGTGAT..........................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................ACA--ACTTGATCTGCCGATCT--GC--G--A--GCT...............................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................A---------ACA--ACTTGATCTGCCGATCT--GC--G--A--GCT...............................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ATTA---------ACA--ACTTGATCTGCC...................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................CA--ACTTGATCTGCCGATCT--GC--G--A--GCT...............................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ATTTGATCGC--------CGG--TCGTTGTTAACTGAGAAAACGTGCG--TAGGGAG--ACGG-ACTCGTGAGATCTCG-AAATCAAATGCC------------AATCGC---GA------CGGAATGACGGTGGACTT-----TTTCGCATTCGGCGACACTTA------GCGTTTGCCTAACCAATTGAAG------------------C------------------------CGATAGCCTGCTAAATTTATCAAACTAATTTG-----TCTACCGCT-----GTCTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGATCT--GC--G--A--GCTGTGATC-----AGTGATCTGC--T-----AT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................................................................................................................................................................................................................................................................CT--GC--G--A--GCTGTGATC-----AGTGAT..............	21	1	2.00	2	0	1	1	0
........................................................................................................................................................................................................................................................................................................................ACA--ACTTGATCTGCCGATCT--............................................	20	1	1.00	1	1	0	0	0
........................................................................................................................................................................................................................................................................................................................ACA--ACTTGATCTGCCGATCT--GC--G--A--GCT...............................	27	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................CTGCCGATCT--GC--G--A--GCTGTG............................	20	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................A--ACTTGATCTGCCGATCT--GC--G--A--GCT...............................	25	1	1.00	1	0	1	0	0
..............................................................................................................................................................................................................................................................................................................A---------ACA--ACTTGATCTGCCGATCT--GC--G--A--GCT...............................	28	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................CGATCT--GC--G--A--GCTGTGATC-----A...................	20	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................GC--G--A--GCTGTGATC-----AGTGATCTGC--T-----..	24	1	1.00	1	0	0	0	1
.............................................................................................................................................................................................................................................................................................................TA---------ACA--ACTTGATCTGCCGATCT--GC--G--A--GCT...............................	29	1	1.00	1	0	1	0	0
.............................................................................................................................................................GACACTTA------GCGTTTGCCT.......................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................CTGTGATC-----AGTGATCTGC--T-----..	19	1	1.00	1	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................CT--GC--G--A--GCTGTGATC-----AGTGATCTGC--T-----..	26	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................ATCTGCCGATCT--GC--G--A--GCT...............................	19	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................TCT--GC--G--A--GCTGTGATC-----AGTGATCT............	24	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................CGATCT--GC--G--A--GCTGTGATC-----....................	19	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................CT--GC--G--A--GCTGTGATC-----AGTGATCTGC--........	25	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................GATCTGCCGATCT--GC--G--A--GCTGTG............................	23	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................GATCTGCCGATCT--GC--G--A--GCTGTGATC-----....................	26	1	1.00	1	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................CT--GC--G--A--GCTGTGATC-----AGTGATCTG...........	24	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................ATCT--GC--G--A--GCTGTGATC-----AGT.................	20	1	1.00	1	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................CTTGATCTGCCGATCT--GC--G--A--GCTGTG............................	26	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................................TA---------ACA--ACTTGATCTGCCG..................................................	18	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................CGATCT--GC--G--A--GCTGTGATC-----AGTG................	23	1	1.00	1	0	0	1	0

dm3

ATTTGATCGC--------CGG--TCGTTGTTAACTGGGAAAACGTGCG--TAGGGAG--ACGG-ACTCGTGAGATCTCG-AAATCAAATGCC------------CATCGC---AA------CGGAATGACGGTGGACTT-----TTTCGCATTCGGCGACACTTA------GCGTTTGCCTAACCAATTGAAGCCA----------------------------------------AGATAGCCTGCTAAATTTATCAAACTAATTTG-----TTTACCGCT-----CTCTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGATCT--GT--G-GA--GCCGTAATC-----AGTGATCTGC--T-----AG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................................................................................................................................................................................................................................................TGATCTGCCGATCT--GT--G-GA--GCC...............................	22	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................GATCTGCCGATCT--GT--G-GA--GCC...............................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................CTTGATCTGCCGATCT--GT--G-......................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................A--ACTTGATCTGCCGATCT--GT--G-GA--GCC...............................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ACTTGATCTGCCGATCT--GT--G-GA--GCC...............................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TCTGCCGATCT--GT--G-GA--GC................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................................................................................................................................................................................................................................................................................GT--G-GA--GCCGTAATC-----AGTGA...............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................CT--GT--G-GA--GCCGTAATC-----AGT.................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TGCCGATCT--GT--G-GA--GCCG..............................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................ATCTGCCGATCT--GT--G-GA--GCCGT.............................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................A--ACTTGATCTGCCGATCT--GT--G-GA--G.................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................TTGATCTGCCGATCT--GT--G-G.....................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................TGCTTTCAGATTA---------ACA--GG.............................................................	18	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ATTTGATCGC--------CGG--TCGTTGTTAACTGGGAAAACGTGCG--TAGGGAG--ACGG-ACTCATGAGATCTCG-AAATCAAATGCC------------AATCTC---GA------CGGGATGACTGTGAACTT-----TTTCGCATTC-GCGACACTTA------GCGTTTGCCTAACCAATTGATG------------------C------------------------TGATAGACTGCTAAATTTATCAAAC-----------------CGCT-----CACTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGATCT--GC--G--A--TCTGTGATC-----TGTGATCTGC--T-----AT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................................................................................................................................................................................................................GATCT--GC--G--A--TCTGTGATC-----TGTGAT..............	24	1	4.00	4	0	0	0	2	2	0	0
.......................................................................................ATGCC------------AATCTC---GA------CGGGATGAC..........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................ATCTGCCGATCT--GC--G--A--TCTGT.............................	21	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................TTCGCATTC-GCGACACTTA------GC...............................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................................GCCTAACCAATTGATG------------------C------------------------TGAT............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................ATCTGCCGATCT--GC--G--A--TCTGTGAT..........................	24	1	1.00	1	0	0	0	0	1	0	0
......................................AAAACGTGCG--TAGGGAG--ACGG-ACT.........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................TCTGCCGATCT--GC--G--A--TCTG..............................	19	1	1.00	1	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................ATTA---------ACA--ACTTGATCTGCCGA.................................................	21	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................ACTTGATCTGCCGATCT--GC--G--A--TCTGT.............................	26	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................ATCTGCCGATCT--GC--G--A--TCTG..............................	20	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................ATTA---------ACA--ACTTGATCTGCC...................................................	19	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................A---------ACA--ACTTGATCTGCCGATCT--GC--G--A--T.................................	26	1	1.00	1	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................ATCT--GC--G--A--TCTGTGATC-----TGTG................	21	1	1.00	1	0	0	0	0	1	0	0

droYak3

ATTTGATCGC--------CGG--TCGTTGTTAACTGGGAAAACGTGCG--TAGGGAG--ACGG-ACTCGTGAGATCTCG-AAATCAAATGCC------------AATTTC---GG------CGGGATGACAGTGGACTTT----TTTCGCATTCGGCGACACTTA------GCGTTTGCCTAACCAATTGAAG------------------C------------------------TGATAGACTGCTAAATTTATCAAACTAATTTG-----TTTACCGCT-----CTCTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGATCT--GT--G--A--T---------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................................................................................................................................................................................................................................................................................A--ACTTGATCTGCCGATCT--GT--........................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TA---------ACA--ACTTGATCTGCCGAT................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ATTA---------ACA--ACTTGATCTGCC...................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................A---------ACA--ACTTGATCTGCCGATCT--GT--........................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................ACA--ACTTGATCTGCCGATCT--GC--........................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................GACTTT----TTTCGCATTCGGCGACACTTA------.................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ATTA---------ACA--ACTTGATCTGCCGATCT--............................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

ATTTGATCGC--------CAG--TCACTGTTAACTGGGAAAACGTGCG--TAGGGAG--ACTG-ACTCGTGAGATCTCGAAAATCAAATGTC------------AAACTC---GA------CGGGATGACGATGGACAT-----TT-----------------TC------ACGTTTGTCTAACCAATTGATG------------------C------------------------CGATAGCCTGCTAAATTTATCAAACTAATTTA-----TTTACCGCT-----CTCTGCTTTCAGATTA---------ACA--GCTTGATCTGCCGATCT--GT--G--A--T-------------------CAGC--CAGCCACC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATTTGATCGC--------CGG--CCGCTGTTAACTGGGAAAACGTGTG--TAGGGCG--ACTG-ACTCGTGAGCTCGCG-AAATCAAATGCC------------AATCTC---GC----CTCGGCATGACGGTGGACAT------TTCGCAGGCGGCGACACTTG------CCGTTTGCCCAACCAATTGAAG------------------C------------------------CGATAGCCTGCTAAATTTATCAAACTAATTTG-----TTCACCGCT-----CTCTGCTTTCAGATTA---------ACA--TCTCCATCTGCCGAGCT--CC--GAGA--TCTGAGATC-----CGAGATCTGA--G-----AT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATTTGATCGC--------CAG--TCGCTGTTAACTGGGAAAACGTGCG--TAGGGCG--ACTG-ACTCGTGAGATCTCG-AAATCAAATGCC------------AAT--------------CGGGATGACGGTGGACTT------TTCGCATTCGGCGACACTTG------GCGTTTGCCTAACCAATTGAAG------------------C------------------------CGATAGCCTGCTAAATTTATCAAACTAATTTG-----TTTACCGCT-----CTCTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGATCT--GT--G-----------------------ATTCGC--G-----AT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATTTGATCGC--------CGG--CCACTGTTAACTGGGAAAACGTGCG--TAGGGCG--ACTG-ACTCGTGAGATCTCA-AAATCAAATGCC------------AATCTC---GA------CAAGATGACGGTGGACAT------TTCGCATTCGGCGACACTTA------GCGTTTGCCTAACCAATTGAAGCCAGTAGCCAGTAG----C------------------------CGATAGCCTGCTAAATTTATCAAACTAATTTG-----TTTACCGCTG--CTCTCTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGATCT--G-------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATTTGATCGC--------CGG--TCGCTGTTAACTGGGAAAACGTGCG--TAGGGAG--ACAA-ACTCGTGAGATCTCG-AAATCAAATGCC------------AATCTC---GG------CGGGATGACGGTGGACAT------TTCGCATTCGGCGACACTTA------GCGTTTGCCTAACCAATTGAAG------------------C------------------------CGATAGCCTGCTAAATTTATCAAACTAATTTG-----TTTACCGCT-----CTC-GCTTTCAGATTA---------ACA--ACTTGATCTGCCGATCT--GCC-G--A--TCTG------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATTTAATCGC--------CGG--TCGCTGTTAACTGGGAAAACGTGCG--TAGGGAG--ACTG-ACTCGTGAGATCTCG-AAATCAAATGTC------------AAACTC---GACAAACTCGGGATGACGGTGGACTT-----TTTCGCATTCGGCGACACTTA------GCGTTTGCCTAACCAATTGAAG------------------C------------------------CGATAGCCTGCTAAATTTATCAAACTAATTTG-----TTTACCGCT-----CTCTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGATCT--GT--G--A--T-------C-----TGCTATCTGC--T-----AT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATTTGATCGC--------CGT--TCGCTGTTAACTGGGAAAACGTGCG--TAGGGAGACTCAG-ACTCGTGAGATCGCG-AAATCAAATGCC------------GATTTA---GA----GACGGAATGACTATGGATAT------TTCGCACACGGCGACACTTG------GCGTTTGCCAAACCAATTCAAG------------------C------------------------CG-------TCTAAATTTATCAAACTAATTTG-----TTGACCGCTT--TGCTCTGCTTTCAGATTA---------ACA--GCTTGATCTGCCGATCT--GC--G--A--TCTGCGATC-----GTCGATCTGC----------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ATTTGATCGC--------CAG--TCGCTGTTAACTGGGGAAACGTGCG--TAGGGCG--ACAG-ACTCGTG---------AAATCAAAAGCC------------AATCAC---GC------CGGGATGACGGTGGAAAT-----------------------TTA------GCGTTTGCCTAACCAATTGAAG------------------A------------------------CGACAGCCTGCTAAATTTATCAAACTAATTTG-----TTGGCTTCT-----CTCTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGATCG--CCCTG--G--TCTG--CCTAGTCTGGAGATCATC--T-----AT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................................................................................................................GATCG--CCCTG--G--TCTG--CCTAGTCTGGA.................	26	1	3.00	3	3	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ATTA---------ACA--ACTTGATCTGCC...................................................	19	1	2.00	2	0	2	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................G--CCTAGTCTGGAGATCATC--........	19	1	2.00	2	0	0	0	0	0	2
................................................................................................................................................................................................................................................................................................................................TGATCTGCCGATCG--CCCTG--G--TC................................	22	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................ATCG--CCCTG--G--TCTG--CCTAGTCTGGA.................	25	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................CTGCCGATCG--CCCTG--G--TCC...............................	19	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................CTG--CCTAGTCTGGAGATCATC--C-----..	22	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CTG--G--TCTG--CCTAGTCTGG..................	18	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ATTA---------ACA--ACTTGATCTGCCGA.................................................	21	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................G--TCTG--CCTAGTCTGGAGATC.............	20	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................ATCTGCCGATCG--CCCTG--G--TCT...............................	21	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................GATCTGCCGATCG--CCCTG--G--TCTG--CC..........................	25	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................TTA---------ACA--ACTTGATCTGCCGA.................................................	20	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................ACA--ACTTGATCTGCCGATCG--CCCT........................................	24	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ATTA---------ACA--ACTTGATCTGCCGAT................................................	22	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................CA--ACTTGATCTGCCGATCG--CCC.........................................	22	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................A--ACTTGATCTGCCGATCG--CCCTG--G--TCTG--C...........................	29	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................CTGCCGATCG--CCCTG--G--TCTG--CC..........................	22	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TGCCGATCG--CCCTG--G--TCTG--CC..........................	21	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................GATCTGCCGATCG--CCCTG--G--TC................................	21	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................AATTTG-----TTGGCTTCT-----CTCTGCTTTCAG.................................................................................	27	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ACTTGATCTGCCGATCG--CCCT........................................	21	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ACTTGATCTGCCGATCG--CC..........................................	19	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ACTTGATCTGCCGATCG--CCCTG--G--T.................................	24	1	1.00	1	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................GCCGATCG--CCCTG--G--TCTG--CCTAGTCT....................	26	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................GATCTGCCGATCG--CCCTG--G--T.................................	20	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CTAGTCTGGAGATCATC--T-----..	18	1	1.00	1	0	0	1	0	0	0

droBip1

ATTTGATCGC--------CGG--TCGCTGTTAACTGGGGAAACGTGCG--TAGGGCG--ACAG-ACTCGTG---------AAATCAAAAGCC------------AATCAC---GC------CGGGATGACGGTGGAAAT-----------------------TTA------GCGTTTGCCCAACCAATTGAAG------------------A------------------------CGACAGCCTGCTAAATTTATCAAACTAATTTG-----TTTACGGCT-----CTCTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGATCT--CCCTG--G--TCTG--CCTA----------------------GT	Size	Hit Count	Total Norm	Total
No Reads

dp5

ATTTGAACGC--------AAACTTCGCTGTTAACTGGGAAAACGTGCG--TAGGGCG--AGAG-ACTCGTG---------AAATCAAACGCCGCTGATCTGATCAATCAGGGAGG------CGAGATGATGATGCAAATCTCGAGTTCGCGTTCGGCGACACTTGGCGGTTGCGTTTGCGCAATCAATTGAA----------------------------------------------ACACCCTGCTAAATTTATCAAACTAATTTG-----ATGTCTGC-------TCTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGACCA--CC--T--ATAGCTGTAA---------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................CA--ACTTGATCTGCCGACCA--CC--T--AT...................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................CAAACTAATTTG-----ATGTCTGC-------T...........................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ACTTGATCTGCCGACCA--CC--T--.....................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ATTA---------ACA--ACTTGATCTGCCGAC................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................ACA--ACTTGATCTGCCGACCA--CC--T--.....................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................A---------ACA--ACTTGATCTGCCGACCA--CC--........................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................ATCTGCCGACCA--CC--T--ATAGCTGT.............................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................ATCTGCCGACCA--CC--T--ATAGCT...............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................AAACGTGCG--TAGGGCG--AGA..............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................A--ACTTGATCTGCCGACCA--CC--T--ATAGCC...............................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

ATTTGAACGC--------AAACTTCGCTGTTAACTGGGAAAACGTGCG--TAGGGCG--AGAG-ACTCGTG---------AAATCAAACGCCGCTGATCTGATCAATCAGGGAGG------CGAGATGATGATGCAAATCTCGAGTTCGCGTTCGGCGACACTTGGAGGTTGCGTTTGCGCAATCAATTGAA----------------------------------------------ACACCCTGCTAAATTTATCAAACTAATTTG-----ATGTCTGC-------TCTGCTTTCAGATTA---------ACA--ACTTGATCTGCCGACCA--CC--T--ATAGCTGTA----------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................................................................................................................................................................................................................................................................................................TTA---------ACA--ACTTGATCTGCC...................................................	18	1	10.00	10	10	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................A--ACTTGATCTGCCGACCA--CC--T--ATAGCTGT.............................	29	1	3.00	3	3	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................CA--ACTTGATCTGCCGACCA--CC--........................................	21	1	3.00	3	3	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................A---------ACA--ACTTGATCTGCCGACC...............................................	20	1	3.00	3	3	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ATTA---------ACA--ACTTGATCTGCC...................................................	19	1	3.00	3	3	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ATTA---------ACA--ACTTGATCTGCCGACCA--CC--T--.....................................	27	1	2.00	2	2	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................ACA--ACTTGATCTGCCGACCA--CC--T--AT...................................	25	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ACTTGATCTGCCGACCA--CC--T--.....................................	20	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ATTA---------ACA--ACTTGATCTGCCGACCA--C...........................................	25	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................ATCTGCCGACCA--CC--T--ATAGCTGT.............................	23	1	1.00	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................A--ACTTGATCTGCCGACCA--CC--T--.....................................	21	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TTA---------ACA--ACTTGATCTGCCGACC...............................................	22	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TA---------ACA--ACTTGATCTGCCGACCA--C...........................................	23	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TTA---------ACA--ACTTGATCTGCCGACCA--CC--........................................	25	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................A--ACTTGATCTGCCGACCA--CC--........................................	20	1	1.00	1	1	0	0	0	0	0
..TTGAACGC--------AAACTTCGCTGTTAACTGG.......................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................CA--ACTTGATCTGCCGACC...............................................	18	1	1.00	1	1	0	0	0	0	0
....................................................................................................GATCAATCAGGGAGG------CGAGATGAT..........................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................CA--ACTTGATCTGCCGACCA--CC--T--.....................................	22	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................CTTGATCTGCCGACCA--CC--........................................	18	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TA---------ACA--ACTTGATCTGCCGACC...............................................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TA---------ACA--ACTTGATCTGCCGACCA--CC--T--.....................................	25	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................CTTGATCTGCCGACCA--CC--T--ATAGCT...............................	25	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................A---------ACA--ACTTGATCTGCCGA.................................................	18	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................AATCTCGAGTTCGCGTTCGGC...............................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................CTGCCGACCA--CC--T--ATAGC................................	18	1	1.00	1	0	1	0	0	0	0

droWil2

ATTTGTTAGCGAAAAAAATAA--ACTTTGTTAACTTGGAAAACGTGCGTGTGGGGAG--ATAA-ACTCGTGAGCTGACGCAAAATATATAGC------------AATTGC---TA---------------------TA------ATTTGCATTTGGTGATA-------------TTTGTTCAATCAATTGAAC------------------CTGCCATCACCGCCGACGACGACGACGACAACTTGCTAAATTTATCAGACTAATTTT-----T--------------TTTGCTTACAGATTTAACACACACACA--ACTTGATCAGCCGACGCCACT--G--ATCGCCGGAA--------AGGCTCTGAACGTGCCAAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................................................................................................................................................................................................CGCCGGAA--------AGGCTCTGAACGTGC....	23	1	14.00	14	0	0	6	8	0
..........................................................................................................................................................................................................................................................................................................................A--ACTTGATCAGCCGACGCCACT--........................................	22	1	7.00	7	0	0	0	7	0
....................................................................................................................................................................................................................................................................................................................................................G--ATCGCCGGAA--------AGGCTCTGAACGTGC....	26	1	6.00	6	0	0	1	5	0
.........................................................................................................................................................................................................................................................................................................................................................CGCCGGAA--------AGGCTCTGAACGTGCC...	24	1	6.00	6	0	0	2	4	0
.........................................................................................................................................................................................................................................................................................................................................................CGCCGGAA--------AGGCTCTGAACGTGCCAAT	27	1	4.00	4	0	0	0	4	0
.........................................................................................................................................................................................................................................................................................................................CA--ACTTGATCAGCCGACGCCACT--........................................	23	1	4.00	4	0	0	3	1	0
.........................................................................................................................................................................................................................................................................................................................................................CGCCGGAA--------AGGCTCTGAACGTGCCA..	25	1	4.00	4	0	0	0	4	0
..............................................................................................................................................................................................................................................................................................................................................................GAA--------AGGCTCTGAACGTGC....	18	1	3.00	3	0	0	0	3	0
.........................................................................................................................................................................................................................................................................................................................................GACGCCACT--G--ATCGCCGG.............................	18	1	3.00	3	0	0	0	3	0
.........................................................................................................................................................................................................................................................................................................................................GACGCCACT--G--ATCGCCGGAA--------AGGCTCT............	27	1	3.00	3	0	0	0	3	0
.............................................................................................................................................................................................................................................................................................................................ACTTGATCAGCCGACGCCACT--........................................	21	1	3.00	3	0	0	0	3	0
.........................................................................................................................................................................................................................................................................................................................................GACGCCACT--G--ATCGCCGGAA--------AGGCT..............	25	1	3.00	3	0	0	0	3	0
........................................................................................................................................................................................................................................................................................................................................CGACGCCACT--G--ATCGCCG..............................	18	1	2.00	2	0	0	0	2	0
........................................................................................................................................................................................................................................................................................................................................CGACGCCACT--G--ATCGCCGGA............................	20	1	2.00	2	0	0	0	2	0
.....................................................................................................................................................................................................................................................................................................................................AGCCGACGCCACT--G--ATCGCC...............................	20	1	2.00	2	0	0	0	2	0
....................................................................................................................................................................................................................................................................................................................................................G--ATCGCCGGAA--------AGGCTCTGAACGTGCC...	27	1	2.00	2	0	0	0	2	0
.............................................................................................................................................................................................................................................................................................................TTAACACACACACA--ACTTGATCAGCC...................................................	26	1	2.00	2	0	0	0	2	0
...............................................................................................................................................................................................................................................................................................................AACACACACACA--ACTTGATCAGCC...................................................	24	1	2.00	2	0	0	0	2	0
..............................................................................................................................................................................................................................................................................................................................................CACT--G--ATCGCCGGAA--------AGGCTCT............	22	1	2.00	2	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................CAGCCGACGCCACT--G--ATCG.................................	19	1	2.00	2	0	0	0	2	0
............................................................................................................................................................................................................................................................................................................................................GCCACT--G--ATCGCCGGAA--------AGGCT..............	22	1	2.00	2	0	0	0	2	0
........................................................................................................................................................................................................................................................................................................................................CGACGCCACT--G--ATCGCCGGAA--------AGGCT..............	26	1	2.00	2	0	0	1	1	0
...........................................................................................................................................................................................................................................................................................................................................CGCCACT--G--ATCGCCGGAA--------AGGCTCT............	25	1	2.00	2	0	0	0	2	0
.....................................................................................................................................................................................................................................................................................................................................AGCCGACGCCACT--G--ATCGC................................	19	1	2.00	2	0	0	0	2	0
........................................................................................................................................................................................................................................................................................................................................................TCGCCGGAA--------AGGCTCTGAACGTGCCA..	26	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................CACA--ACTTGATCAGCCGACG...............................................	20	1	1.00	1	0	0	0	1	0
.........................................ACGTGCGTGTGGGGAG--ATAA-ACTCGTG.....................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................CGACGCCACT--G--ATCGCCGGAA--------...................	21	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................CA--ACTTGATCAGCCGACGCC.............................................	20	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................ACGCCACT--G--ATCGCCGGAA--------A..................	20	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................CGCCACT--G--ATCGCCGGAA--------AGGCTCTG...........	26	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................CACT--G--ATCGCCGGAA--------AGGCTCTGAACGT......	28	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................A--ACTTGATCAGCCGACGC..............................................	18	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................ATTTAACACACACACA--ACT............................................................	19	1	1.00	1	0	0	0	1	0
...............................AACTTGGAAAACGTGCGTGTGGGGA....................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................ACACACA--ACTTGATCAGCCGACGCCACT--........................................	28	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................TTGATCAGCCGACGCCACT--G--.....................................	20	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................TAACACACACACA--ACTTGATCAGCCGA.................................................	27	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CGCCACT--G--ATCGCCGGAA--------AGG................	21	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................ATCGCCGGAA--------AGGCTCTGAACGTGC....	25	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................GACGCCACT--G--ATCGCCGGAA--------AGGCTC.............	26	1	1.00	1	0	0	0	1	0
...............................AACTTGGAAAACGTGCGTGTGGGGAG--.................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................ACA--ACTTGATCAGCCGACGCCACT--........................................	24	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................CACACACA--ACTTGATCAGCC...................................................	20	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................ACACACA--ACTTGATCAGCCGA.................................................	21	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................ACGCCACT--G--ATCGCCGGAA--------AGGCTCT............	26	1	1.00	1	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................ACACA--ACTTGATCAGCCGA.................................................	19	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................GACGCCACT--G--ATCGCCGGA............................	19	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................TCGCCGGAA--------AGGCTCTGAACGTGCCAAT	28	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................G--ATCGCCGGAA--------AGGCTCTGAAC........	22	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................CGCCACT--G--ATCGCCGGAA--------AGGC...............	22	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................GCCACT--G--ATCGCCGGAA--------AGGCTCTGAAC........	28	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................ACTTGATCAGCCGACGCCAC...........................................	20	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................CACACACACA--ACTTGATCAGCCGACGC..............................................	27	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................TCGCCGGAA--------AGGCTCTGAACGTG.....	23	1	1.00	1	0	0	0	1	0
................................................................................................................................................ATTTGCATTTGGTGATA-------------TTTG..........................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................CACACACA--ACTTGATCAGCCGA.................................................	22	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................ACACACA--ACTTGATCAGCCG..................................................	20	1	1.00	1	0	0	0	1	0
...........................................................ATAA-ACTCGTGAGCTGACGCA...........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................ACACACA--ACTTGATCAGC....................................................	18	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................A--ACTTGATCAGCCGACGCC.............................................	19	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................CGCCGGAA--------AGGCTCTGAAC........	19	1	1.00	1	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................AACACACACACA--ACTTGAT........................................................	19	1	1.00	1	0	0	0	1	0
..................................................................................................................A---------------------TA------ATTTGCATTTGGTGATA-------------TTTGTTCA......................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0
........................................................G--ATAA-ACTCGTGAGCTGACGC............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................AGCCGACGCCACT--G--ATCGCCG..............................	21	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................ACTTGATCAGCCGACGCCACT--G--A....................................	23	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................ACACA--ACTTGATCAGCCGACG...............................................	21	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................ATTTAACACACACACA--ACTTGATCAGC....................................................	27	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................CACACACA--ACTTGATCAGC....................................................	19	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................ACACA--ACTTGATCAGCCGACGC..............................................	22	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................A--ACTTGATCAGCCGACGCCACT--G--AT...................................	25	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................GCCACT--G--ATCGCCGGAA--------AG.................	19	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................GCCACT--G--ATCGCCGGAA--------A..................	18	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CCGACGCCACT--G--ATCGCC...............................	18	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................CA--ACTTGATCAGCCGACGCCAC...........................................	22	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................CGACGACGACGACAACTTGCTAAAT................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................GATCAGCCGACGCCACT--G--AT...................................	20	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................CGACGCCACT--G--ATCGCCGGAA--------AGGC...............	25	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................CTTGATCAGCCGACGCCACT--G--AT...................................	23	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................CGACGCCACT--G--ATCGCCGG.............................	19	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................CTTGATCAGCCGACGCCAC...........................................	19	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................T--G--ATCGCCGGAA--------AGGCTCTGAACGTGCC...	28	1	1.00	1	0	0	0	1	0
........................................................G--ATAA-ACTCGTGAGCTGACG.............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................CACA--ACTTGATCAGCCGACGCCACT--........................................	25	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................CGCCGGAA--------AGGCTCTGAACGTG.....	22	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................CCGACGCCACT--G--ATCGCCGGAA--------AGGCT..............	27	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................CGACGCCACT--G--ATCGCCGGAA--------AGGCTCT............	28	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................CGGAA--------AGGCTCTGAACGTGC....	20	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................ACACACACA--ACTTGATCAGCC...................................................	21	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................GCCACT--G--ATCGCCGGAA--------AGGCTCT............	24	1	1.00	1	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................CAGCCGACGCCACT--G--ATCGCC...............................	21	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................GCCGACGACGACGACGAC............................................................................................................................................	18	20	0.05	1	0	0	0	1	0

droMoj3

C-----------------------------------------------------------------------------------------------------------------------------------------------------GTGCTGCTGCTTTTC------GCGTTTACTTGAGCAATTAATGCCAATGATTTGCAATCGGA------------------------TCGCATCTTGCTAAATTTATCGAACTAATTTGCCATGTTTGCTCTTATCTACGCTACTTACAGATTA---------ACGTGTCTGGATCTCTGGATCG--GC------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................................................................................................................................................................................................................................A---------ACGTGTCTGGATCTCTGGAT................................................	21	1	1.00	1	1	0	0	0	0	0

dsi_28020

2r:13224040-13224189 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads