ID:

dsi_28014

 Coordinate:

3l:11517639-11517788 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-6.0 -5.8 -5.6 -5.5

Flybase annnotation

CDS [3l_11517634_11517638_+]; five_prime_UTR [3l_11517600_11517633_+]; exon [3l_11517600_11517638_+]; intron [3l_11517639_11517947_+]

No Repeatable elements found

Sense Strand Reads

-----------#######################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AACCAATTTTCACTTCCTTTCTAAATCGCACGTTGAGCAGAAAAGATGGCGTAAGTGTAAATCAAAATTTTAATATGTGAAATAAAGTAACTAAACATTGGGTACATTAATGAAATTCGAATTCTATGCGATCCTGTGATCAGTGGCAATCAGAAACCAGCTTTTTAGACCTTTTCCATGTCCATATCAGTTTGGAAATGATTGCAAAAGAAAAACGTGGTTTTATGTGCCAAATAAGCAACTAATATGT
**********************************************************************************************************************************************....((........................((((((..............))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M025
embryo
 O002
Head
 M023
head
 O001
Testis
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
..............................................................................................................................................GTGGCAATCAGAAACCAGC......................................................................................... 19 0 1 42.00 42 0 34 4 0 0 0 0 2 0 2 0 0 0 0
..............................................................................................................................................GTGGCAATCAGAAACCAGCTT....................................................................................... 21 0 1 26.00 26 0 26 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GTGGCAATCAGAAACC............................................................................................ 16 0 1 17.00 17 0 17 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GTGGCAATCAGAAACCAGCTTTTTAG.................................................................................. 26 0 1 15.00 15 9 0 6 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GTGGCAATCAGAAACCAGCTTTTTA................................................................................... 25 0 1 14.00 14 11 0 3 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GTGGCAATCAGAAACCAGCTTTTT.................................................................................... 24 0 1 13.00 13 12 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GTGGCAATCAGAAACCAGCT........................................................................................ 20 0 1 12.00 12 0 3 9 0 0 0 0 0 0 0 0 0 0 0
..............TCCTTTCTAAATCGCACGTTGAGCAGA................................................................................................................................................................................................................. 27 0 1 12.00 12 1 0 0 4 5 0 0 0 0 0 0 1 1 0
...................................................................................................................................................................................GTCCATATCAGTTTGGAAATG.................................................. 21 0 1 10.00 10 1 0 0 0 0 7 2 0 0 0 0 0 0 0
..............................................................................................................................................GTGGCAATCAGAAACCAGCTTTTTAGA................................................................................. 27 0 1 7.00 7 3 0 0 0 4 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ATATCAGTTTGGAAATGA................................................. 18 0 1 7.00 7 4 0 0 0 0 2 1 0 0 0 0 0 0 0
......................................................................................................................................................................................CATATCAGTTTGGAAATG.................................................. 18 0 1 5.00 5 0 1 0 0 0 1 1 0 2 0 0 0 0 0
..............................................................................................................................................GTGGCAATCAGAAACCAGCTTT...................................................................................... 22 0 1 5.00 5 2 3 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GAAATGATTGCAAAAGAAAAAC.................................. 22 0 1 5.00 5 0 0 0 3 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ATATCAGTTTGGAAATGAT................................................ 19 0 1 4.00 4 3 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ATTGCAAAAGAAAAACGTGGT............................. 21 0 1 4.00 4 1 1 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GTGGCAATCAGAAACCAG.......................................................................................... 18 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0
.......................................GAAAAGATGGCGTAAGTG................................................................................................................................................................................................. 18 0 1 4.00 4 0 0 0 0 0 0 0 2 1 1 0 0 0 0
.................................................................................................................................................................................ATGTCCATATCAGTTTGGAAATG.................................................. 23 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGCAAAAGAAAAACGTGGTT............................ 20 0 1 4.00 4 2 0 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................TGCAAAAGAAAAACGTGGT............................. 19 0 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ATTGCAAAAGAAAAACGTGG.............................. 20 0 1 3.00 3 1 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGTCCATATCAGTTTGGAAATG.................................................. 22 0 1 3.00 3 1 0 0 0 0 2 0 0 0 0 0 0 0 0
..............................................................................................................................................GTGGCAATCAGAAACCAGCTTTTTAGAC................................................................................ 28 0 1 3.00 3 1 0 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................AGACCTTTTCCATGTCCATATCAGTTTG........................................................ 28 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AAACGTGGTTTTATGTGCCAAATAAGCA.......... 28 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GAAATGATTGCAAAAGAAA..................................... 19 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................CAGCTTTTTAGACCTTTTCCATG...................................................................... 23 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ATTGCAAAAGAAAAACGTGGTTTTATGTG..................... 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GGTTTTATGTGCCAAATAAGCA.......... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AAATGATTGCAAAAGAAAAAC.................................. 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTGCAAAAGAAAAACGTGGTTTTAT........................ 25 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TGGCAATCAGAAACCA........................................................................................... 16 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CATATCAGTTTGGAAATGAT................................................ 20 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0
......................................................................................................................GAATTCTATGCGATCCTG.................................................................................................................. 18 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0
..........................................................................................................................................................................................................TGCAAAAGAAAAACGTGGTTTTATGTG..................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AAACGTGGTTTTATGTGCCAAATAAGC........... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ATTGCAAAAGAAAAACGT................................ 18 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................CTAAATCGCACGTTGAGC.................................................................................................................................................................................................................... 18 0 2 2.00 4 1 0 0 0 0 3 0 0 0 0 0 0 0 0
..............................................................................................................................................GTGGCAATCAGAAACCAGCTTTT..................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTGCAAAAGAAAAACGTGGTTTTATGT...................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CCATATCAGTTTGGAAATGA................................................. 20 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0
...................................AGCAGAAAAGATGGCGTAA.................................................................................................................................................................................................... 19 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
.............................................................................................................................................................................................GTTTGGAAATGATTGCAA........................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GACCTTTTCCATGTCCATATCAGTTTG........................................................ 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CCATATCAGTTTGGAAATGATTGCAAAAG........................................ 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AAATGATTGCAAAAGAAAAA................................... 20 0 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0
...............................GTTGAGCAGAAAAGATGGC........................................................................................................................................................................................................ 19 0 2 1.50 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0
............................CACGTTGAGCAGAAAAGA............................................................................................................................................................................................................ 18 0 2 1.50 3 0 0 0 0 0 0 1 2 0 0 0 0 0 0
..................TTCTAAATCGCACGTTGA...................................................................................................................................................................................................................... 18 0 2 1.50 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0
.................................................................................................................................................................................ATGTCCATATCAGTTTGGAAATGATT............................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................CATGTCCATATCAGTTTGGAAATG.................................................. 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................GCTTTTTAGACCTTTTCCATGTCC................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................CATGTCCATATCAGTTTGGAAATGATTGC............................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GCAAAAGAAAAACGTGGTT............................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGCAAAAGAAAAACGTGGTTTTATGT...................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................ACGTTGAGCAGAAAAGATG.......................................................................................................................................................................................................... 19 0 2 1.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
.............................................................................................................................................................................................................AAAAGAAAAACGTGGTTTTA......................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........ACTTCCTTTCTAAATCGCACGTTGAGC.................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTTGGAAATGATTGCAAAAGAAAAAC.................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTGCAAAAGAAAAACGTGGTTTTATGTG..................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GCAAAAGAAAAACGTGGTTTTATG....................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CATATCAGTTTGGAAAT................................................... 17 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GTGGCAATCTGCAACCAGCTTTTTAT.................................................................................. 26 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AAAACGTGGTTTTATGTGCCAA................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GTGGCAATAAGAAACCAGC......................................................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AACGTGGTTTTATGTGCC................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TTCCTTTCTAAATCGCACGTTGAGCAGA................................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AAGAAAAACGTGGTTTTATGTGCCA.................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ATGTCCATATCAGTTTGGAAATGATTGCA............................................ 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................GTTTGGAAATGATTGCAAAA......................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ATGATTGCAAAAGAAAAACGTGGTTT........................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GGGGCAATCAGAAACCAGCTTTTT.................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TGGCAATCAGAAACCAGCTTTTTAGA................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CAGAAACCAGCGTTTTAGACCTTTTCC......................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CCTTTTCCATGTCCATATCAGTTTGGAA..................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AATGATTGCAAAAGAAAAACGT................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ATTGCAAAAGAAAAACGTG............................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ATGTCCATATCAGTTTGGAAATGA................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GTGGAAATCAGAAACCAGCTTTTTCGA................................................................................. 27 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTTGGAAATGATTGCAAAAGAAAAA................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................CAGCTTTTTAGACCTTTTCCATGTCC................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................AACCAGCTTTTTAGACCTTTTCCATGT..................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TGGAAATGATTGCAAAAGA....................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................AGAAACCAGCTTTTTAGACCTTTACCAT....................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CCATGTCCATATCAGTTTGGAAAT................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTGGAAATGATTGCAAAAGAAAAACGTGG.............................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GTGGCAATCAGGAGCCAGCT........................................................................................ 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GTTTTATGTGCCAAATAAGCA.......... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TTAGACCTCTTCCATGTCC................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AATGATTGCAAAAGAAAAACGTGGT............................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GCAAAAGAAAAACGTGGTTT........................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GCAAAAGAAAAACGTGGTTTTATGTGCC................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................ATCAGTTTGGAAATGATTGC............................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTTTCCATGTCCATATCAGTTTGG....................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TCCATATCAGTTTGGAAATGATTGCAAA.......................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GAATGATTGCAAAAGAAAAA................................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TATCAGTTTGGAAATGAT................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTCCATGTCCATATCAGTTTGGAAAT................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................CCAGCTTTTTAGACCTTTTCCATGTCC................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTTTCCATGTCCATATCAGTTTGGAA..................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GTCCATATCAGTTTGGAAATGATTGC............................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GATTGCAAAAGAAAAACGTGGT............................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TATCAGTTTGGAAATGA................................................. 17 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................CATGTCCATATCAGTTTGGAAATGAT................................................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................GCTTTTTAGACCTTTTCC......................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CGCAAAAGAAAAACGTGGTT............................ 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AAACGTGGTTTTATGTGCCAAATA.............. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGTCCATATCAGTTTGGAAATGATT............................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GAAGAACGTGGTTTTATATTCCA.................. 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CCATATCAGTTGGGAAATGATT............................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AAAAGAAAAACGTGGTTTTATGTGC.................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ATTGCAAAAGAAAAACGTGGTTTTATGT...................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ATATCAGTTTGGAAATGATTGCAAAA......................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................TTTCTAAATCGCACGTTGAGC.................................................................................................................................................................................................................... 21 0 2 1.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0
..................TTCTAAATCGCACGTTGAGC.................................................................................................................................................................................................................... 20 0 2 1.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................ACCAGCTTTTTAGACC............................................................................... 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GAAATGATTGCAAAAGAAAAA................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AAAAACGTGGTTTTATGTGCCAAAT............... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GTGGAAATCAGAAACCAGCTTTTTAG.................................................................................. 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AAAGAAAAACGTGGTTTTATGTG..................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GAAAAACGTGGTTTTATGTGCC................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CCATATCAGTTTGGAAATG.................................................. 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGCAAAAGAAAAACGTGGTTTTATGTGCC................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CAGAAACCAGCTTTTTAGACCTTTTCC......................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CAGAAACCAGCTTTTTAG.................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......TTTCACTTCCTTTCTAAATCGCACGTT........................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................ACCAGCTTTTTAGACCT.............................................................................. 17 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GTGGCAATCAGAAAC............................................................................................. 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................AGACCTTTTCCATGTCCATATC.............................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ATTGCAAAAGAAAAACGTGGTTTTAT........................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................ATCAGAAACCAGCTTTTTAGAC................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................GTTTGGAAATGATTGCAAAAGAAAA.................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GTGGCAATCAGAAACCCGCTTTTTAG.................................................................................. 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGCAAAAGAAAAACGTGGTTTTAT........................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTTGGAGAGGATTGCAAAAAAAA..................................... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................................GAAATGATTGCAAAAGAAAAACT................................. 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................AAAAGATGGCGTAAGTG................................................................................................................................................................................................. 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AGGTCCATATCATTTTGGA...................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TGGCAATCAGAAACCAGCTTTTTA................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GAAAAACGTGGTTTTATGTGCCA.................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGCAAAAGAAAAACGTGGTTTTATGTGC.................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGCAAAAGAAAAACGTGGTTTT.......................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTGCAAAAGAAAAACGTG............................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TCAGTTTGGAAATGATT............................................... 17 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ATGTCCATATCAGTTTGGAAATGATTGCAT........................................... 30 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AAAGAAAAACGTGGTTTTATGTGCCAA................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GAAACCAGCTTTTTAGACCTTTTCC......................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AAAAACGTGGTTTTATGTGC.................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CCTTTTCCATGTCCATATC.............................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AATGATTGCAAAAGAAAAAC.................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AAACGTGGTTTTATGTGCCAA................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AACGTGGTTTTATGTGCCAAATAAGC........... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................AGAAAAGATGGCGTAA.................................................................................................................................................................................................... 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ACGTGGTTTTATGTGCCAA................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ATTGCAAAAGAAAAACGTGGTTTT.......................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CAAAAGAAAAACGTGGTTTTATGTGCC................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TCCTTTCTAAATCGCACGTTGAGCAGAA................................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................GCACGTTGAGCAGAAAAGATGGC........................................................................................................................................................................................................ 23 0 2 1.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................CAGAAACCAGCTTTTTAGACCTT............................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TGGCAATCAGAAACC............................................................................................ 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CAGAAACCAGCTTTTTAGACC............................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GTGGCAATCAGAACCCAGCTTTTT.................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTTGGAGAGGATTGCAAAAAAAAAA................................... 25 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................TCTAAATCGCACGTTGAGCAGAAAAGA............................................................................................................................................................................................................ 27 0 2 1.00 2 0 0 0 1 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................ATGTCCATATCAGTTTGGAAATGAT................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGTCCATATCAGTTTGGA...................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GTCCATATCAGTTTGGAAATGA................................................. 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CCTTTTCCATGTCCATAT............................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................GTGGCAATCCGACACCAGC......................................................................................... 19 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........ACTTCCTTTCTAAATCGCACG.......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TGGCAATCAGAAACCAGC......................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AAAAGAAAAACGTGGTTTTATGTGCC................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................GTTTGGAAATGATTGC............................................. 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTGCAAAAGAAAAACGTGGTTTT.......................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TTTTAGACCTTTTCCATGTCC................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................AATCGCACGTTGAGC.................................................................................................................................................................................................................... 15 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................ATCGCACGTTGAGCAGAAA............................................................................................................................................................................................................... 19 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................TTCTAAATCGCACGTTGAGCAGAAAAGA............................................................................................................................................................................................................ 28 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................CGTTGAGCAGAAAAGATCG......................................................................................................................................................................................................... 19 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................ACGTTGAGCAGAAAAGA............................................................................................................................................................................................................ 17 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................GCACGTTGAGAAGAAAAGATGGC........................................................................................................................................................................................................ 23 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................CTAAATCGCACGTTGAGCAGAAAAG............................................................................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................CGCACGTTGAGCAGAAAAGA............................................................................................................................................................................................................ 20 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................CGCACGTTGAGCAGAAAAGATGGCG....................................................................................................................................................................................................... 25 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...............CCTTTCTAAATCGCACGTTGAGCT................................................................................................................................................................................................................... 24 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................CGCACGTTGAGCAGAAAAG............................................................................................................................................................................................................. 19 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................AATCGCACGTTGAACAGAAAAGATGGC........................................................................................................................................................................................................ 27 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................CACGTTGAGCAGAAAAGATG.......................................................................................................................................................................................................... 20 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................TCTAAATCGCACGTTGAGCAGAAAA.............................................................................................................................................................................................................. 25 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................TTGGGTACATTAATGA......................................................................................................................................... 16 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................TAAATCGCACGTTGAGCAGAAAAGA............................................................................................................................................................................................................ 25 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................CACGTTGAGCAGAAAAGATGGC........................................................................................................................................................................................................ 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................TTTCTAAATCGCACGTTGAGCAGAAA............................................................................................................................................................................................................... 26 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................AATCGCACGTTGAGCAGAAAAGATGGC........................................................................................................................................................................................................ 27 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................CTTTCTAAATCGCACGTTGAGC.................................................................................................................................................................................................................... 22 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................ATATCAGTTTGGAAATGG................................................. 18 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................TCTAAATCGCACGTTGAGCAGG................................................................................................................................................................................................................. 22 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................TTTCTAAATCGCACGTTGAGCAGA................................................................................................................................................................................................................. 24 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................TAAATCGCACGTTGAGCAGAAAAGATG.......................................................................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................ACGTTGAGCAGAAAAGATGGC........................................................................................................................................................................................................ 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................TAAATCGCACGTTGAGCAGAAAAGAT........................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GCAAAAGAAAAACGTGGT............................. 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGTACATATCAGTTTGGA...................................................... 18 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TCTAAATCGCACGTTGAGC.................................................................................................................................................................................................................... 19 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................TTCTAAATCGCACGTTGAGCAGAAAA.............................................................................................................................................................................................................. 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................CACGTTGAGCAGAAA............................................................................................................................................................................................................... 15 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................ATCGCACGTTGAACAGA................................................................................................................................................................................................................. 17 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................CGCACGTTGAGCAGAAAAGATGGCGT...................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................AATCGCACGTTGAGCAGA................................................................................................................................................................................................................. 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................GCACGTTGAGCAGAAAAGATGG......................................................................................................................................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................AAATCGCACGTTGAGC.................................................................................................................................................................................................................... 16 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................TCGCACGTTGAGCAGAAAAGA............................................................................................................................................................................................................ 21 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTTGGAGAGGATTGCAAAAAAA...................................... 22 3 6 0.33 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2
.............................................................................................................................................................................................................AAAAGAAAAACGTGG.............................. 15 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................GGAAATGATTGCAAA.......................................... 15 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AAATGATTGCAAAAGG....................................... 16 1 18 0.17 3 0 0 0 1 2 0 0 0 0 0 0 0 0 0
....................................GCAGAAAAGATGGCGTCG.................................................................................................................................................................................................... 18 2 12 0.17 2 0 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................GAGCAGAAAAGATGGCGCC..................................................................................................................................................................................................... 19 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GGGGCAATCAGAAAC............................................................................................. 15 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................AAATCTCACGTAGAGCAAAA................................................................................................................................................................................................................ 20 3 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TGTGATCAGTGGCCA..................................................................................................... 15 1 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................AACCTCCCGTTGAGCAGAA................................................................................................................................................................................................................ 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................TGGGTAATGATTGCAGAAGA....................................... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTGGTTAAAAGTGAAGGAAAGATTTAGCGTGCAACTCGTCTTTTCTACCGCATTCACATTTAGTTTTAAAATTATACACTTTATTTCATTGATTTGTAACCCATGTAATTACTTTAAGCTTAAGATACGCTAGGACACTAGTCACCGTTAGTCTTTGGTCGAAAAATCTGGAAAAGGTACAGGTATAGTCAAACCTTTACTAACGTTTTCTTTTTGCACCAAAATACACGGTTTATTCGTTGATTATACA
**************************************************....((........................((((((..............))))))))********************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M053
female body
...................................................................................................................................................................................CAGGTATAGTCAAACCTTTAC.................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................AATATGGAAAAGGTGCAGGT.................................................................. 20 2 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AAGGTTTTCTTTTTGCATCAAGA.......................... 23 3 1 1.00 1 0 0 1 0 0 0 0 0
TTGGCTAAAAGTGAAGGAAAG..................................................................................................................................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................AATTTGGAAAAGGTGCAGGT.................................................................. 20 2 2 0.50 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AGGTTTTCTTTTTGCATCAAGA.......................... 22 3 2 0.50 1 0 0 0 1 0 0 0 0
...........................CCGGCAATTCGTCTTTTCTA........................................................................................................................................................................................................... 20 3 11 0.45 5 0 1 0 0 0 4 0 0
.....................................................................................................................................................................ATGTGGAAAAGGTGCAGGT.................................................................. 19 2 7 0.43 3 3 0 0 0 0 0 0 0
.....................................................................................................................................................................................GGTATACTCAACCCTTTAC.................................................. 19 2 4 0.25 1 0 0 0 0 1 0 0 0
....................................................................................................................................................................AATATGGAAAAGGTGCAGGTCT................................................................ 22 3 4 0.25 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................ATTTGGAAAAGGTGCAGGTCT................................................................ 21 3 4 0.25 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GGTTTTTTCGTTGACAATACA 21 3 9 0.22 2 0 0 0 0 0 0 2 0
...............................................................................................................................CGCTGTGACACTAGTCATC........................................................................................................ 19 3 6 0.17 1 0 0 1 0 0 0 0 0
........................................................................................................................................................................TGGAACAGGTGCAGGTATA............................................................... 19 2 6 0.17 1 0 0 0 0 0 0 0 1
...................................................................................................................................................................................CAGGTACAGGCAAACCTTGAC.................................................. 21 3 9 0.11 1 0 0 0 1 0 0 0 0
............................................................................................................................ATACGCTAGGACTCTA.............................................................................................................. 16 1 11 0.09 1 0 0 0 0 1 0 0 0
....................................................................................................................................................................ATTGTGGAAAAGGTCCAGGT.................................................................. 20 3 13 0.08 1 1 0 0 0 0 0 0 0
......................TTTGGCGTGCAGCTAGTCT................................................................................................................................................................................................................. 19 3 17 0.06 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................TTTGGAAAAGGTGCAGGT.................................................................. 18 2 19 0.05 1 1 0 0 0 0 0 0 0
.................................................................................................................................CTAGAACACTAGTCACT........................................................................................................ 17 2 19 0.05 1 0 0 0 0 1 0 0 0
...........................CCGGCAATTCGTCTTTTCT............................................................................................................................................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................AGGAACAGGCATGGTCAA.......................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0

Generated: 04/24/2015 at 10:25 AM