ID:

dsi_28004

 Coordinate:

node_102570:1332-1481 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.5 -22.5 -22.4

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GAAAGTTGAATATAAAGGTTGTGATCGCACAGACAAGGAAATCCCTGGTTGCAGACAGTTTTTGACACAGAAAACATCTTAATTAGTAATTACTCTATTGGAAATTGTCATTTCCTGACAGATTGAGACTATAATATAAAGTCAACTTTGAAACTTTAATAATACGTGTTTTCCTAATTGTTTGTTTAATTTTATTTTAGGTTTTGCAGACATCTAATAAATATTCTGGACTCGACAATGAAGGATCGGA
**************************************************((((((((((...((((((((.....)))....((((..(((.(((...((((((....))))))....))).))).)))).....((((((((....)))..))))).......))))).....))))))))))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
..............................................................................................................................................................................................................................ATTCTGGACTCGACAATGAAGGATCGGA 28 0 1 7.00 7 6 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CATCTAATAAATATTCTGGACT.................. 22 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ATCTAATAAATATTCTGGACT.................. 21 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................CGACAATGAAGGATCGGA 18 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGGACTCGACAATGAAGGATCGGA 24 0 1 3.00 3 0 0 1 0 0 0 2 0 0 0
.............................................................................................................................................................................................................................TATTCTGGACTCGACAATGAAGGA..... 24 0 1 2.00 2 0 0 0 1 0 1 0 0 0 0
......................................................................................................................................................................................................................TAATAAATATTCTGGACTCGACAATGAA........ 28 0 1 2.00 2 0 0 1 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................CTAATAAATATTCTGGACT.................. 19 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TTCTGGACTCGACAATGAAGGA..... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ATTCTGGACTCGACAATGAAG....... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TCTGGACTCGACAATGAAGGAT.... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CATCTAATAAATATTCTGGACTCGACAA............ 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................................CTGGACTCGACAATGAAGGATC... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ATATTCTGGACTCGACAATGAAGGAC.... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TCTGGACTCGACAATGAAGGATCGGA 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ATATTCTGGACTCGAC.............. 16 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................GACTCGACAATGAAGGATCGGG 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCAGACATCTAATAAATATTCTGGACT.................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGCAGACATCTAATAAATATAA........................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGCAGACATCTAATAAATATTCTGGACT.................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......TGAATATAAAGGTTGTGATCGCACA........................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTGCAGACATCTAATAAATATTCTGGAC................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................AATAAATATTCTGGACTCGACAATGAA........ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AATATTCTGGACTCGACAATGAA........ 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................AGACATCTAATAAATATTCTGGACTC................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................ATTCTGGACTCGACAATGAAGGATC... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................CATTTCCTGACAGATTGA............................................................................................................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................ATTCTGGACTCGACAATGAA........ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTGGACTCGACAATGAAGGAT.... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TAAATATTCTGGACTCGACAATGAAA....... 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................CGACAATGAAGGATCGGG 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AATATTCTGGACTCGACAATGAAGGATC... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TCTGGACTCGACAATGAAGGATCGG. 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.........................................TCCCTGGTTGCAGACAGTTT............................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................ATATTCTGGACTCGACAATGAA........ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................TGTGATCGCACAGACAAGGAAATCCC............................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TAAATATTCTGGACTCGACAATGAAG....... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................AAGGAAATCCCTGGTTGCAGACAGT............................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GACTCGACAATGAAGGATCGGA 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ACATCTAATAAATATTCTGGACT.................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CATCTAATAAATATTCTGGACTCG................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TTCAGGACTCGACAAT........... 16 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................GAAGATTGTCATTTCCTGA.................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................TATCCTGGACTTGACA............. 16 2 20 0.20 4 0 0 0 0 0 0 0 0 4 0
............................................................................................CTCCTTTTGAAATTGTCATTT......................................................................................................................................... 21 3 13 0.08 1 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................ATTCTGGACTTGACA............. 15 1 14 0.07 1 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................AATTTTGAAACTTTAAT.......................................................................................... 17 1 19 0.05 1 0 0 0 0 0 0 1 0 0 0
..........................GTACGGACAAGGGAATCC.............................................................................................................................................................................................................. 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTTTCAACTTATATTTCCAACACTAGCGTGTCTGTTCCTTTAGGGACCAACGTCTGTCAAAAACTGTGTCTTTTGTAGAATTAATCATTAATGAGATAACCTTTAACAGTAAAGGACTGTCTAACTCTGATATTATATTTCAGTTGAAACTTTGAAATTATTATGCACAAAAGGATTAACAAACAAATTAAAATAAAATCCAAAACGTCTGTAGATTATTTATAAGACCTGAGCTGTTACTTCCTAGCCT
**************************************************((((((((((...((((((((.....)))....((((..(((.(((...((((((....))))))....))).))).)))).....((((((((....)))..))))).......))))).....))))))))))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 M023
head
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
..............................................................................................................AAAGGACTGTCTAACTCTGATATTAT.................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................AAAGGACTGTCTAACTCTGATATT.................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................AGGGACCAACGTCTGTCAAAAACTGTGTCT................................................................................................................................................................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................TTAACAAACAAATCAAAATA....................................................... 20 1 2 0.50 1 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................TCCAAAACGTCTGGAGAC.................................. 18 2 6 0.33 2 0 0 0 0 1 1 0 0
......................................................................................................................................................................................................................................GATCTGTTACTTCCT..... 15 1 4 0.25 1 0 1 0 0 0 0 0 0
........................AGCTTGTCTGTTCCT................................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 1 0 0 0 0
......................................................................................ATTAATGCGATAACC..................................................................................................................................................... 15 1 12 0.08 1 0 0 0 1 0 0 0 0
................................................................................................................AGGACTGTCTAAGTGTG......................................................................................................................... 17 2 12 0.08 1 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................GAGCTGTCATTTCCTAG... 17 2 15 0.07 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................AAAAAGTCTGTAGATT................................. 16 1 19 0.05 1 0 0 0 0 0 0 0 1
.............................................ACCAACGCCTGTCCTAAAC.......................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 node_102570:1282-1531 - dsi_28004 GAAAGTTGAATATAAAGGTTG-TGATCGCACAGACAAGGAAATCCCTGGTTGCAGACAGTTTTTGACACAGAAAACATCTTAATTAGTAATTACTCTATTGGAAATTGTCATTTCCTGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------GATTGAGACTATA----AT----------------------------------------------------------------------ATAAAGTCA-------------------AC--TTT-------GAAACTTTAATAAT----A--C----------------------------GTG---------TTTTCCTAATTGTTTGTTTAATTTT------------------------------------------------------ATT-TTAGGTTTTGCAGAC--ATCTAA-------T--AAATATTCTG-GA-CTC--------GACAATGA--A----------------------------------GGATCG---GA
droSec2 scaffold_78:117162-117398 - GAAAGTTGAATATAAAGGTTG-TGATCGCACAGACAAGGAAATCCCTGGT-------------TGACACGGAAAACATCTTAATTAGTAATTACTCTAGTGGAAATTGTCATTTCCTGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------GATTGAGACTATA----AT----------------------------------------------------------------------ATAAAGTCA-------------------AC--TTT-------AAAACTTTAATAAT----A--C----------------------------GTG---------TTTTCCTAATTGTTTGTTTAATTTT------------------------------------------------------ATT-TTAGGTTTTGCAGAC--ATCTAA-------T--AAATATTCTG-GA-CTC--------GACAATGA--A----------------------------------GGATCG---GA
dm3 chr2RHet:2917111-2917300 + AGACAGCC-----------------------------------------------------TTTGACACAGAAAACAACTTTCTTAGTAATTAATCTTGCGGAAATGGTTATTTCCTGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAG----------AA----------------------------------------------------------------------ATAAAATTT-------------------AC--TTT-------TGAACTTTAATAAT----A--------------------------------TG---------TTTTCCTAATTGTTTGTTTAATTTT------------------------------------------------------ATT-TTAGGTTTTGCAATC--ATCTAA-------T--AAATATTCAG-GA-CTC--------GACAATGA--A----------------------------------GGATCG---GA
droEre2 scaffold_4929:26304175-26304331 + TAGTATTT------------------------------------------------------------------------------------AC-----------------------ATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTAAAAGATTTCCAG---ATTG---AAGACTATA----AT----------------------------------------------------------------------ATATAATAT-------------------CGTCT--------T----AAATAATAAT----T--C----------------------------GTG---------TTTTTCTAATTGTTTGCTTAATTTT------------------------------------------------------ATT-GTAGGTTTTGCAGAC--ATCTAA-------T--AAATATTCCG-GA-CTG--------GACAATGA--A----------------------------------GGATCG---GA
droYak3 v2_chrUn_127:61367-61697 + TACTTTGGAATAGATAGTTTG-TGATTGCACAGACAAGGCGCTTACAAAT--------------------------------------------------------TGT------------------------------------------------------------------------------------------------------------GTT-------------------------GCCT--ATTCCAAGACATTATTTTAAA-------A------------------------------GACAAAAAATAACTTTGAATAGTGCTAAAGTTAAGTCACTGAAATCACTCATATCAGGACATTATATTTAAGAGCCCGTTCCCATCCTTATCGTATTTATACTACAATATTTCCAA---ATTGATTAAGTCAATA----GT----------------------------------------------------------------------ATAAAATAT-------------------AC--TTT------TAAAATAATAATAAA----A--C----------------------------GTG---------CTATTCTAATAGTTTGTTTAATTTT------------------------------------------------------GTT-GTAGGTTTTGCAGAC--ATCTAA-------T--AAATATTCCG-GA-CTT--------GACAATGA--A----------------------------------GGATCG---GA
droEug1 scf7180000409106:62366-62494 + TTGTTTTT---------------------------------------------------------------------------------------------------------TTCTGAT-----------------------AAATTATTAGCTGAAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------------ATAAAACAA-------------------AT--ATT------T-A--CTTTATCAAC----AAAT----------------------------GTG---------TTTATTTAATTATTTTCTTTATTTC------------------------------------------------------AGT----GATTTTGTTTTC--A---------------------------T-TTT--------GATTTTGT--T----------------------------------TTAATG---AA
droBia1 scf7180000301469:27894-28077 - TGTAAATA----------------------------------------------------------------------------------------------------------TTTTTT----------------TGGGAAGAA---------------A-A-----ATGGTATCGTAATGTTAAAA---------------------------------------------------------ATTC--GTCTA---------------TAAATGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------TTT-------TGGATTACTATAAT----T--------------------------------TA---------TTTTTTTGAC-----------------------------------AGTATATACTTTCGTAAAATATTTACTTTGCATAATA-GAAGACTTTCTGGGT--TACTGC-------T--AAAATGTCTA-GG-CTA--------AACAAATG--T----------------------------------GAACAG---GT
droTak1 scf7180000412495:12388-12616 + AAAACCGAATATTAATG-TGATCTACTGTACGCACAAGAAAATTCTCTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATACACACAAACACACATAAATATATAAGCCAAAAACTGTCTTCTTCTTTTTAGTTTCAAAGAAAGAATGAAAGGCATAAAAGAAAAAAAAA--TTT-----------TTTTAAGAAT----A--T------------------------------------------------GTTGATTTTTTAATTCT------------------------------------------------------ATT-TTTGGCTTATTCAAC--GTAAAGCGTGACAG--GCCAATTCA-------------------GGTCA--A----------------------------------GTCTCA---GA
droEle1 scf7180000490094:78371-78523 - GTTTTTGA----------------------------------------------------------------------------------------------------------CAAATCAGATAAAATATTTTTTCA-----------------------------------------------------------------------GTA---GCATTAATTTTTTGGAAACTAATTCAAA--GTTT--TTTAA---------------T-------A--------------------------------------------------------------------------------------------------------------------------------------------------------AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTATTTTTTTGAATTCTAGTGAAATATTTT-TTCAT-----------------------------------TGTAT-------------------------------T-T---ACTTTTGAGAT--ATCGAA-------T--GAA-ATTTTG-GT-T------------------------------------------------------------T---TG
droRho1 scf7180000777873:71008-71201 - TGGTTGTC----------------------------------------------------------------------------------------------------------CGATTT----------------TGACAAAA------------------------CTAAAAGCGTAATTCTGAT---------ATAGT-----A----AATAATTA--------------------------CTAT--ATCTCAAAGGAATATTTTGAT-------A--------------------------------------------------------------------------------------------------------------------------------------------------------AACAGAA----------AA----------------------------------------------------------------------AC--AGTAA--------------------------------------AATAAAAAT--------------------------------------------------TTTATTGGATCTTATTTTTTTTC-----------C--------TTTTTCGATTTT----------------------C--------CTTGGGAGCT--TTATGA-------T--AAAAATGTCTGAT-CTT--------AATTTAAT--TA---------------------------------AAACCG---AA
droFic1 scf7180000453094:9736-9940 + ACAAAAAT----------------------------------------------------------------------------------------------------------CATCGA-----------------------A-----------------------------------ATCTAAAAT---------------------------------------------------------ATTT--TATTT---------------TAAATTAT------------------------------------------------------------------------------------------------------------AATCTCTGTTC----------------------------------TATTGTGATTCTA----AA----------------------------------------------------------------------ATAAAGTTA-------------------AA--T-------------------------------------------------------------T---------TTTTCATTATTGCTTTCTCCACTTC-----------TTT----------------------------------------ATT-TGAGTTTTTGCACTGCTGCATGG-------T---TATATGCAT-GA-CCC------TTTACTCTGC--AAGGGTCGAAAAGATCGAAAAAAATGTATAAAAATCGGACGACTAT
droKik1 scf7180000302698:1017085-1017292 + TCTCTTTTTGGAAAT--------------------------------------------------------------------------------------------------------------------------------AGTTTTTAATTTGAAATA-----------------------------------------------------AATCACAAAAAAT-------------GTGGTAAGTAGAGATGAATAG------------------AATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------GTGGAGCTG-------------------GG--TTTTGGCTAT---GCTATAATGAT----ATATGTCTTTATTAATTAATTTTCTTATATATTTTATATAAATA-------------------------------------------------------------------------------TTT-ATATATTTTAAAGAA--ATTCAA-------GTAAAGTCTTTGG-AA-TTT--------GATAATGA--A----------------------------------AGAGAG---AG
droAna3 scaffold_13099:221229-221419 + GCTGCGGA----------------------------------------------------------------------------------------------------------TAGTTACACTGAGACAATTAATTA-----------------------------------------------------------------------GTAATAATTACGCTATTT-------------GATGTTGGCACAAGTCCCAAC------------------AATATTATTAAACTTAAACTTTCTTATGAAAGTTAAAAAAAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----------------------------GTG---------TTTATTTATATTTATATATATTTAT--AACCAATTTTTT-------------------------------------------------ATATTCAAAT--ATCTGA-------G--TATTGCTTT--------------------------G----------------------------------CGTGTG---CA
droBip1 scf7180000393750:31418-31614 + ACAATTTTTGGAA--------------------------------------------------------------------------------------------------------AA------------------------CAAACAAAATTTAAA------------------------CTGAT---------CAAGA-----TAACAG---ATCTCAGAT-------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------AACTGAGATAAAA----ATAACAAAACAAATTCG------------------------------------------------------------------------------------------------T-AAATAAAAATAAA----T--A----------------------------AAT---------TAAATAAATTAAATTTTTTTTTTTTATTATCAATCATTCATAAGTTACAT-------------------------------T-T---------AAAATCTGTCCG----------------------GA-ATTATGAAC--AATAATTA--A----------------------------------ATTTTT---TA
dp5 Unknown_group_416:7852-7983 + AATTACTC----------------------------------------------------------------------------------------TACTCAA----------------------------------------AA---------------AAATTAAA---------CATTTTTTGA------------------------C---ACTGTGATTTGATAGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-CTA-------------------GA--TTT-------GGGGCTTACAAAT--------------------------------------TA---------TTTTTTTCATTAATTTTTTATTTTT----------------------------------------------------------CTAGGTTAAGTTA-A--ATTTA------------------------------------------AA--A----------------------------------ATTTTC---TA
droPer2 scaffold_56:91054-91191 - TTTTCTAA----------------------------------------------------------------------------------------------------------TAAACA----------------TAATTAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT----------------------------------------------------------------------ATCAAGTTT-------------------AC--TTT-------TA-GTTTTCATTATATGTATAT----GT--------ATATATGTATGTATTTTATGTA-----------------------------------------------------------------------------------TAT-ATGTATTTTATGGAT--C---------------------------------------------------------GATAAACCTAAAAAACATAAACAAGGGTTGGCCA---AA
droWil2 scf2_1100000004943:1211826-1212022 + GCACTGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAATCTCCCTGCTT---------------------------TTCCGGC------------------AGTTTTGTAA-G-------------------CACAG---------------------------------------------------------------------------------------------AAAAGAAAATATAACTGCTCCCGTG---AAAATTGTAAGTCAT----------------------------------------------------------------------GTGTGACAA-------------------TGTCT--------A----ATGTATTTAT----A--A----------------------------GTG---------TCCTACAGGTGGTTAGCTCGATTTT------------------------------------------------------AGTTGGCCATAATCTGGGT--AGTCAG-------T--GGATA------GA-CGT--------GACAATGACAA----------------------------------TGACAA---CG
droVir3 scaffold_12823:531955-532085 - GCTATTCC-----------------------------------------------------------------------------------------------------------ATAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------GA----------------------------------------------------------------------------------------------TAAAGACTATATGAATATTTGAATT---TATATTTTAATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------TTGTTCTAA-----TATATAACTTT-------------------------------------------------------TT-TGAAGACTCATAAAT--GCCAAA-------G--AAGTATTTCT-AA-TGG--------ATTCTAGA--A----------------------------------CAATAA---TA
droMoj3 scaffold_6496:21153892-21154040 - CGTAAAAA----------------------------------------------------------------------------------------------------------TAATTT----------------TAATTAAAA---------------A-ATTAAACTAGAAACCCATTTCTTAA------------------------A---GTTGATCTTGTATTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTA-----------------------------------------------------------------------------------------------------------------TTT------------TATAAAAC--------------------------------------TA---------TATTGTTTATAATTTGTATAGTTTT------------CT----------------------------------------AT------------------------A-------T--TAAAATTATA-CA-CTA--------TGCTTTAG--A----------------------------------AAAACC---CA
droGri2 scaffold_14906:11832015-11832156 + AGAATTGAACTACAATA-T------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAT-TTATTTAAATATAAATATTTTTAGAA---ATCTTTGTTCTTTAGC------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------ACT---------A----AT----------------------------------------------------------------------ATAAAACAAATAGTAT-----------------------------ATTTAAA-----------------------------------------------------------------------------------------------------------------------------------------------GAAAGAA--ATTTGA-------T--AAAAATGCTTGAGCTCG--------CGCTCTAA--A----------------------------------ACAACA---TG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GAAAGTTGAATATAAAGGTTG-TGATCGCACAGACAAGGAAATCCCTGGTTGCAGACAGTTTTTGACACAGAAAACATCTTAATTAGTAATTACTCTATTGGAAATTGTCATTTCCTGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------GATTGAGACTATA----AT----------------------------------------------------------------------ATAAAGTCA-------------------AC--TTT-------GAAACTTTAATAAT----A--C----------------------------GTG---------TTTTCCTAATTGTTTGTTTAATTTT------------------------------------------------------ATT-TTAGGTTTTGCAGAC--ATCTAA-------T--AAATATTCTG-GA-CTC--------GACAATGA--A----------------------------------GGATCG---GASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTG-GA-CTC--------GACAATGA--A----------------------------------GGATCG---GA2817.00706100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--ATCTAA-------T--AAATATTCTG-GA-CT.................................................................2213.00301200000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAA-------T--AAATATTCTG-GA-CT.................................................................2113.00300300000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------GACAATGA--A----------------------------------GGATCG---GA1813.00302100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-GA-CTC--------GACAATGA--A----------------------------------GGATCG---GA2413.00300000010002000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTG-GA-CTC--------GACAATGA--A----------------------------------GGA........2412.00200000000100010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-------T--AAATATTCTG-GA-CTC--------GACAATGA--A----------------------------------...........2812.00200000010010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAA-------T--AAATATTCTG-GA-CT.................................................................1912.00201100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTG-GA-CTC--------GACAATGA--A----------------------------------GGA........2212.00202000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTG-GA-CTC--------GACAATGA--A----------------------------------G..........2112.00200200000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTG-GA-CTC--------GACAATGA--A----------------------------------GGAT.......2211.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--ATCTAA-------T--AAATATTCTG-GA-CTC--------GACAA...................................................2811.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG-GA-CTC--------GACAATGA--A----------------------------------GGATC......2211.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTG-GA-CTC--------GACAATGA--A----------------------------------GGAC.......2611.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTG-GA-CTC--------GACAATGA--A----------------------------------GGATCG---GA2611.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTG-GA-CTC--------GAC.....................................................1611.00100000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-CTC--------GACAATGA--A----------------------------------GGATCG---GG2211.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAC--ATCTAA-------T--AAATATTCTG-GA-CT.................................................................2711.00101000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGAC--ATCTAA-------T--AAATATAA.........................................................................2211.00101000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGAC--ATCTAA-------T--AAATATTCTG-GA-CT.................................................................2811.00100100000000000000
......TGAATATAAAGGTTG-TGATCGCACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGAC--ATCTAA-------T--AAATATTCTG-GA-C..................................................................2811.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------T--AAATATTCTG-GA-CTC--------GACAATGA--A----------------------------------...........2711.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTCTG-GA-CTC--------GACAATGA--A----------------------------------...........2311.00110000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAC--ATCTAA-------T--AAATATTCTG-GA-CTC--------........................................................2611.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTG-GA-CTC--------GACAATGA--A----------------------------------GGATC......2511.00101000000000000000
.............................................................................................................CATTTCCTGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------GATTGA................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTG-GA-CTC--------GACAATGA--A----------------------------------...........2011.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG-GA-CTC--------GACAATGA--A----------------------------------GGAT.......2111.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--AAATATTCTG-GA-CTC--------GACAATGA--A----------------------------------A..........2611.00100000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------GACAATGA--A----------------------------------GGATCG---GG1811.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTCTG-GA-CTC--------GACAATGA--A----------------------------------GGATC......2811.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTG-GA-CTC--------GACAATGA--A----------------------------------GGATCG---G.2511.00110000000000000000
..........................................TCCCTGGTTGCAGACAGTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTG-GA-CTC--------GACAATGA--A----------------------------------...........2211.00100100000000000000
...................TG-TGATCGCACAGACAAGGAAATCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--AAATATTCTG-GA-CTC--------GACAATGA--A----------------------------------G..........2611.00100010000000000000
...................................AAGGAAATCCCTGGTTGCAGACAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-CTC--------GACAATGA--A----------------------------------GGATCG---GA2211.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--ATCTAA-------T--AAATATTCTG-GA-CT.................................................................2311.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--ATCTAA-------T--AAATATTCTG-GA-CTC--------G.......................................................2411.00101000000000000000
droSec2
GAAAGTTGAATATAAAGGTTG-TGATCGCACAGACAAGGAAATCCCTGGT-------------TGACACGGAAAACATCTTAATTAGTAATTACTCTAGTGGAAATTGTCATTTCCTGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------GATTGAGACTATA----AT----------------------------------------------------------------------ATAAAGTCA-------------------AC--TTT-------AAAACTTTAATAAT----A--C----------------------------GTG---------TTTTCCTAATTGTTTGTTTAATTTT------------------------------------------------------ATT-TTAGGTTTTGCAGAC--ATCTAA-------T--AAATATTCTG-GA-CTC--------GACAATGA--A----------------------------------GGATCG---GASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC--------GACAATGA--A----------------------------------GGATCG---GA2012.0020020
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-GA-CTC--------GACAATGA--A----------------------------------GGAT.......1911.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTG-GA-CTC--------GACAATGA--A----------------------------------GGA........2311.0010100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAC--ATCTAA-------T--AAATATTCTG-GA-CT.................................................................2511.0011000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG-GA-CTC--------GACAATGA--A----------------------------------GGATCG---GA2511.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-CTC--------GACAATGA--A----------------------------------GGATCG---GA2211.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATTCTG-GA-CTC--------GACA....................................................1911.0011000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------GACAATGA--A----------------------------------GGATCG---GA1811.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTG-GA-CTC--------GACAATGA--A----------------------------------GG.........2211.0010010
dm3
AGACAGCC-----------------------------------------------------TTTGACACAGAAAACAACTTTCTTAGTAATTAATCTTGCGGAAATGGTTATTTCCTGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAG----------AA----------------------------------------------------------------------ATAAAATTT-------------------AC--TTT-------TGAACTTTAATAAT----A--------------------------------TG---------TTTTCCTAATTGTTTGTTTAATTTT------------------------------------------------------ATT-TTAGGTTTTGCAATC--ATCTAA-------T--AAATATTCAG-GA-CTC--------GACAATGA--A----------------------------------GGATCG---GASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-------T--AAATATTCAG-GA-CTC--------GACAAT..................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC--------GACAATGA--A----------------------------------GGATCG---GA2016.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-CTC--------GACAATGA--A----------------------------------GGATCG---G.2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000212000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG-GA-CTC--------GACAATGA--A----------------------------------GGATCG---..2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--AAATATTCAG-GA-CTC--------GACAATGA--A----------------------------------GGA........2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000011200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-------T--AAATATTCAG-GA-CTC--------GACAATG.................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAG-GA-CTC--------GACAATGA--..............................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--AAATATTCAG-GA-CTC--------GACAATGA--A----------------------------------GG.........2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCAG-GA-CTC--------GACAATGA--A----------------------------------GGA........2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------T--AAATATTCAG-GA-CTC--------GACAAT..................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTAATTTT------------------------------------------------------ATT-TTA...............................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG-GA-CTC--------GACAATGA--A----------------------------------GG.........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTGTTTAATTTT------------------------------------------------------ATT-TTAG..............................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAA-------T--AAATATTCAG-GA-CT.................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAG-GA-CTC--------GACAATGA--A----------------------------------GGATCG---GA2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-GA-CTC--------GACAATGA--A----------------------------------GGA........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAG-GA-CTC--------GACAATGA--A----------------------------------GG.........2111.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAG-GA-CTC--------GACAATGA--A----------------------------------GGATCG---GA2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-GA-CTC--------GACAATGA--A----------------------------------GGATCG---G.2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG-GA-CTC--------GACAATGA--A----------------------------------GGAT.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TAGTAATTAATCTTGCGGAAATGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAG-GA-CTC--------GACAATGA--A----------------------------------GGATCG---..2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--ATCTAA-------T--AAATATTCAG-GA-CTC--------GACAAT..................................................3011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCAG-GA-CTC--------GACAAT..................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT----A--------------------------------TG---------TTTTCCTAATTGTTTGT....................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-CTC--------GACAATGA--A----------------------------------GGATCG---..2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTCAG-GA-CTC--------GACAATG.................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCAG-GA-CTC--------GACAATGA--A----------------------------------GGATCG---..2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--------GACAATGA--A----------------------------------GGATCG---GA1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTCAG-GA-CTC--------GACAATGA--A----------------------------------GG.........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAA-------T--AAATATTCAG-GA-CTC--------GAC.....................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATC--ATCTAA-------T--AAATATTCAG-GA-CT.................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-CTC--------GACAATGA--A----------------------------------GGAT.......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TAGTATTT------------------------------------------------------------------------------------AC-----------------------ATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTAAAAGATTTCCAG---ATTG---AAGACTATA----AT----------------------------------------------------------------------ATATAATAT-------------------CGTCT--------T----AAATAATAAT----T--C----------------------------GTG---------TTTTTCTAATTGTTTGCTTAATTTT------------------------------------------------------ATT-GTAGGTTTTGCAGAC--ATCTAA-------T--AAATATTCCG-GA-CTG--------GACAATGA--A----------------------------------GGATCG---GASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-CTG--------GACAATGA--A----------------------------------GGATCG---GA2212.0020101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG--------GACAATGA--A----------------------------------GGATCG---GA2011.0010100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------GACAATGA--A----------------------------------GGATCG---GA1811.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCCG-GA-CTG--------GACAATG.................................................1911.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-GA-CTG--------GACAATGA--A----------------------------------GGATCG---GA2311.0011000000
droYak3
TACTTTGGAATAGATAGTTTG-TGATTGCACAGACAAGGCGCTTACAAAT--------------------------------------------------------TGT------------------------------------------------------------------------------------------------------------GTT-------------------------GCCT--ATTCCAAGACATTATTTTAAA-------A------------------------------GACAAAAAATAACTTTGAATAGTGCTAAAGTTAAGTCACTGAAATCACTCATATCAGGACATTATATTTAAGAGCCCGTTCCCATCCTTATCGTATTTATACTACAATATTTCCAA---ATTGATTAAGTCAATA----GT----------------------------------------------------------------------ATAAAATAT-------------------AC--TTT------TAAAATAATAATAAA----A--C----------------------------GTG---------CTATTCTAATAGTTTGTTTAATTTT------------------------------------------------------GTT-GTAGGTTTTGCAGAC--ATCTAA-------T--AAATATTCCG-GA-CTT--------GACAATGA--A----------------------------------GGATCG---GASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------T--AAATATTCCG-GA-CTT--------GACA....................................................2211.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAA-------T--AAATATTCCG-GA-...................................................................1911.00100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTT--------GACAATGA--A----------------------------------GGATCG---GA2011.00100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................ATATTTAAGAGCCCGTTCCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.......................GATTGCACAGACAAGGCGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTT--------GACAATGA--A----------------------------------GGATCG---G.1911.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAA-------T--AAATATTCCG-GA-CT.................................................................2111.00110000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCCG-GA-CTT--------GACAATGA--A----------------------------------GGATC......2711.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-CTT--------GACAATGA--A----------------------------------GGATCG---GA2211.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAGAC--ATCTAA-------T--AAATATTCCG-......................................................................2611.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCG-GA-CTT--------GACAATGA--A----------------------------------GGATCG---GA2711.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-CTT--------GACAATGA--A----------------------------------GGATCG---GA2111.00101000000000
droEug1
TTGTTTTT---------------------------------------------------------------------------------------------------------TTCTGAT-----------------------AAATTATTAGCTGAAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------------ATAAAACAA-------------------AT--ATT------T-A--CTTTATCAAC----AAAT----------------------------GTG---------TTTATTTAATTATTTTCTTTATTTC------------------------------------------------------AGT----GATTTTGTTTTC--A---------------------------T-TTT--------GATTTTGT--T----------------------------------TTAATG---AASizeHit CountTotal NormTotal
No Reads
droBia1
TGTAAATA----------------------------------------------------------------------------------------------------------TTTTTT----------------TGGGAAGAA---------------A-A-----ATGGTATCGTAATGTTAAAA---------------------------------------------------------ATTC--GTCTA---------------TAAATGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------TTT-------TGGATTACTATAAT----T--------------------------------TA---------TTTTTTTGAC-----------------------------------AGTATATACTTTCGTAAAATATTTACTTTGCATAATA-GAAGACTTTCTGGGT--TACTGC-------T--AAAATGTCTA-GG-CTA--------AACAAATG--T----------------------------------GAACAG---GTSizeHit CountTotal NormTotal
No Reads
droTak1
AAAACCGAATATTAATG-TGATCTACTGTACGCACAAGAAAATTCTCTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATACACACAAACACACATAAATATATAAGCCAAAAACTGTCTTCTTCTTTTTAGTTTCAAAGAAAGAATGAAAGGCATAAAAGAAAAAAAAA--TTT-----------TTTTAAGAAT----A--T------------------------------------------------GTTGATTTTTTAATTCT------------------------------------------------------ATT-TTTGGCTTATTCAAC--GTAAAGCGTGACAG--GCCAATTCA-------------------GGTCA--A----------------------------------GTCTCA---GASizeHit CountTotal NormTotal
No Reads
droEle1
GTTTTTGA----------------------------------------------------------------------------------------------------------CAAATCAGATAAAATATTTTTTCA-----------------------------------------------------------------------GTA---GCATTAATTTTTTGGAAACTAATTCAAA--GTTT--TTTAA---------------T-------A--------------------------------------------------------------------------------------------------------------------------------------------------------AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTATTTTTTTGAATTCTAGTGAAATATTTT-TTCAT-----------------------------------TGTAT-------------------------------T-T---ACTTTTGAGAT--ATCGAA-------T--GAA-ATTTTG-GT-T------------------------------------------------------------T---TGSizeHit CountTotal NormTotal
No Reads
droRho1
TGGTTGTC----------------------------------------------------------------------------------------------------------CGATTT----------------TGACAAAA------------------------CTAAAAGCGTAATTCTGAT---------ATAGT-----A----AATAATTA--------------------------CTAT--ATCTCAAAGGAATATTTTGAT-------A--------------------------------------------------------------------------------------------------------------------------------------------------------AACAGAA----------AA----------------------------------------------------------------------AC--AGTAA--------------------------------------AATAAAAAT--------------------------------------------------TTTATTGGATCTTATTTTTTTTC-----------C--------TTTTTCGATTTT----------------------C--------CTTGGGAGCT--TTATGA-------T--AAAAATGTCTGAT-CTT--------AATTTAAT--TA---------------------------------AAACCG---AASizeHit CountTotal NormTotal
No Reads
droFic1
ACAAAAAT----------------------------------------------------------------------------------------------------------CATCGA-----------------------A-----------------------------------ATCTAAAAT---------------------------------------------------------ATTT--TATTT---------------TAAATTAT------------------------------------------------------------------------------------------------------------AATCTCTGTTC----------------------------------TATTGTGATTCTA----AA----------------------------------------------------------------------ATAAAGTTA-------------------AA--T-------------------------------------------------------------T---------TTTTCATTATTGCTTTCTCCACTTC-----------TTT----------------------------------------ATT-TGAGTTTTTGCACTGCTGCATGG-------T---TATATGCAT-GA-CCC------TTTACTCTGC--AAGGGTCGAAAAGATCGAAAAAAATGTATAAAAATCGGACGACTATSizeHit CountTotal NormTotal
No Reads
droKik1
TCTCTTTTTGGAAAT--------------------------------------------------------------------------------------------------------------------------------AGTTTTTAATTTGAAATA-----------------------------------------------------AATCACAAAAAAT-------------GTGGTAAGTAGAGATGAATAG------------------AATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------GTGGAGCTG-------------------GG--TTTTGGCTAT---GCTATAATGAT----ATATGTCTTTATTAATTAATTTTCTTATATATTTTATATAAATA-------------------------------------------------------------------------------TTT-ATATATTTTAAAGAA--ATTCAA-------GTAAAGTCTTTGG-AA-TTT--------GATAATGA--A----------------------------------AGAGAG---AGSizeHit CountTotal NormTotal
No Reads
droAna3
GCTGCGGA----------------------------------------------------------------------------------------------------------TAGTTACACTGAGACAATTAATTA-----------------------------------------------------------------------GTAATAATTACGCTATTT-------------GATGTTGGCACAAGTCCCAAC------------------AATATTATTAAACTTAAACTTTCTTATGAAAGTTAAAAAAAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----------------------------GTG---------TTTATTTATATTTATATATATTTAT--AACCAATTTTTT-------------------------------------------------ATATTCAAAT--ATCTGA-------G--TATTGCTTT--------------------------G----------------------------------CGTGTG---CASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................TACACTGAGACAATTAATTA-----------------------------------------------------------------------GTAATAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28150.071010000
droBip1
ACAATTTTTGGAA--------------------------------------------------------------------------------------------------------AA------------------------CAAACAAAATTTAAA------------------------CTGAT---------CAAGA-----TAACAG---ATCTCAGAT-------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------AACTGAGATAAAA----ATAACAAAACAAATTCG------------------------------------------------------------------------------------------------T-AAATAAAAATAAA----T--A----------------------------AAT---------TAAATAAATTAAATTTTTTTTTTTTATTATCAATCATTCATAAGTTACAT-------------------------------T-T---------AAAATCTGTCCG----------------------GA-ATTATGAAC--AATAATTA--A----------------------------------ATTTTT---TASizeHit CountTotal NormTotal
No Reads
dp5
AATTACTC----------------------------------------------------------------------------------------TACTCAA----------------------------------------AA---------------AAATTAAA---------CATTTTTTGA------------------------C---ACTGTGATTTGATAGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-CTA-------------------GA--TTT-------GGGGCTTACAAAT--------------------------------------TA---------TTTTTTTCATTAATTTTTTATTTTT----------------------------------------------------------CTAGGTTAAGTTA-A--ATTTA------------------------------------------AA--A----------------------------------ATTTTC---TASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TTTTCTAA----------------------------------------------------------------------------------------------------------TAAACA----------------TAATTAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT----------------------------------------------------------------------ATCAAGTTT-------------------AC--TTT-------TA-GTTTTCATTATATGTATAT----GT--------ATATATGTATGTATTTTATGTA-----------------------------------------------------------------------------------TAT-ATGTATTTTATGGAT--C---------------------------------------------------------GATAAACCTAAAAAACATAAACAAGGGTTGGCCA---AASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GCACTGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAATCTCCCTGCTT---------------------------TTCCGGC------------------AGTTTTGTAA-G-------------------CACAG---------------------------------------------------------------------------------------------AAAAGAAAATATAACTGCTCCCGTG---AAAATTGTAAGTCAT----------------------------------------------------------------------GTGTGACAA-------------------TGTCT--------A----ATGTATTTAT----A--A----------------------------GTG---------TCCTACAGGTGGTTAGCTCGATTTT------------------------------------------------------AGTTGGCCATAATCTGGGT--AGTCAG-------T--GGATA------GA-CGT--------GACAATGACAA----------------------------------TGACAA---CGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GCTATTCC-----------------------------------------------------------------------------------------------------------ATAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------GA----------------------------------------------------------------------------------------------TAAAGACTATATGAATATTTGAATT---TATATTTTAATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------TTGTTCTAA-----TATATAACTTT-------------------------------------------------------TT-TGAAGACTCATAAAT--GCCAAA-------G--AAGTATTTCT-AA-TGG--------ATTCTAGA--A----------------------------------CAATAA---TASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
CGTAAAAA----------------------------------------------------------------------------------------------------------TAATTT----------------TAATTAAAA---------------A-ATTAAACTAGAAACCCATTTCTTAA------------------------A---GTTGATCTTGTATTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTA-----------------------------------------------------------------------------------------------------------------TTT------------TATAAAAC--------------------------------------TA---------TATTGTTTATAATTTGTATAGTTTT------------CT----------------------------------------AT------------------------A-------T--TAAAATTATA-CA-CTA--------TGCTTTAG--A----------------------------------AAAACC---CASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AGAATTGAACTACAATA-T------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAT-TTATTTAAATATAAATATTTTTAGAA---ATCTTTGTTCTTTAGC------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------ACT---------A----AT----------------------------------------------------------------------ATAAAACAAATAGTAT-----------------------------ATTTAAA-----------------------------------------------------------------------------------------------------------------------------------------------GAAAGAA--ATTTGA-------T--AAAAATGCTTGAGCTCG--------CGCTCTAA--A----------------------------------ACAACA---TGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:01 AM