ID:dsi_28003 |
Coordinate:3l:7304352-7304501 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
exon [3l_7304244_7304351_+]; CDS [3l_7304244_7304351_+]; intron [3l_7304352_7306604_+]
No Repeatable elements found
| ##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GAATGCCTGCCACGGCGAGGATGGCAAGACGGTCCTCAGCCAGACATTAGGTAAGGTATTATGTCTCTTAATGTCCTACATGTCCCAGTGACATCTCATAGTTAATATTTCATTTTATCAATTTGATTGATAAGCAAATTAAACTTTAAAGTGGAGAAACTTGAAAATTTTGGGAATTATTTAAAACATTTGTTTTGCTTATATGTCGAACCAATCCTTAAAAAGTTATAAGTAGTCCAAGATAGCCTTT **************************************************..((.(((..(((......(((((..((.(((((((((.......(((.((((....((((((((((....(((((((........)))))))...)))))))))).))))))).....))))))..))).))..))))))))..)))))************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | GSM343915 embryo |
M023 head |
O001 Testis |
SRR553488 RT_0-2 hours eggs |
SRR553487 NRT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................ATGGCAAGACGGTCCTCAGCCA................................................................................................................................................................................................................ | 22 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...............CGTGGATGGCAAGACTGTC........................................................................................................................................................................................................................ | 19 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................CATTATATAAGGTATTATGCCT........................................................................................................................................................................................ | 22 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TATCTCTTAATGTCCT............................................................................................................................................................................. | 16 | 1 | 2 | 0.50 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ............................................................................GACATATCCCTGTGACATCT.......................................................................................................................................................... | 20 | 3 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ........GCCACGGCTAGGATGGCGA............................................................................................................................................................................................................................... | 19 | 2 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................................TTAGATCATTTGTTTTGCATAT................................................ | 22 | 3 | 7 | 0.14 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........ACGGCGAAGATGGCAGGA............................................................................................................................................................................................................................. | 18 | 2 | 12 | 0.08 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .......................................................................................................................................................AGGAGAAACTTGAAA.................................................................................... | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ........................................................................................................................................................GGAGAAACGTGAAAA................................................................................... | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ..................................................................................................................................................................GAAAATTTGGGGAATGA....................................................................... | 17 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
|
CTTACGGACGGTGCCGCTCCTACCGTTCTGCCAGGAGTCGGTCTGTAATCCATTCCATAATACAGAGAATTACAGGATGTACAGGGTCACTGTAGAGTATCAATTATAAAGTAAAATAGTTAAACTAACTATTCGTTTAATTTGAAATTTCACCTCTTTGAACTTTTAAAACCCTTAATAAATTTTGTAAACAAAACGAATATACAGCTTGGTTAGGAATTTTTCAATATTCATCAGGTTCTATCGGAAA
**************************************************..((.(((..(((......(((((..((.(((((((((.......(((.((((....((((((((((....(((((((........)))))))...)))))))))).))))))).....))))))..))).))..))))))))..)))))************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR618934 dsim w501 ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
M025 embryo |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................ACAGGGTCGCTGTAGACTAGCAA................................................................................................................................................... | 23 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................CAGGGTCACTCTAGAGTAG...................................................................................................................................................... | 19 | 2 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..................................................................................AGGGTCACTCTAGAGT........................................................................................................................................................ | 16 | 1 | 8 | 0.38 | 3 | 0 | 2 | 1 | 0 | 0 | 0 |
| ...................................................................................GGATCACTGTAGAGTA....................................................................................................................................................... | 16 | 1 | 3 | 0.33 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..................................................................................AGGGTCACTCTAGAGTAG...................................................................................................................................................... | 18 | 2 | 11 | 0.27 | 3 | 0 | 2 | 0 | 0 | 1 | 0 |
| ..........................................................................................................................................................................................................................TTTATTCAATATTAATCAGGTT.......... | 22 | 3 | 5 | 0.20 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..............................................................CAGAGAATTACAGTAAGT.......................................................................................................................................................................... | 18 | 2 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| ...................................CGTCGGTCTGCAATCCA...................................................................................................................................................................................................... | 17 | 2 | 9 | 0.11 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ........CGGTGGCGCTCCTAC................................................................................................................................................................................................................................... | 15 | 1 | 10 | 0.10 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..............................CCAGGCGTCGGTCTG............................................................................................................................................................................................................. | 15 | 1 | 12 | 0.08 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ................................GGGAGTCGGTCTGTA........................................................................................................................................................................................................... | 15 | 1 | 14 | 0.07 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .................................................CCATGCCATAATTCAG......................................................................................................................................................................................... | 16 | 2 | 14 | 0.07 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................TTTTAAAACCGTTAATAAGTCT................................................................. | 22 | 3 | 15 | 0.07 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| ............................................................................................................................................................TTTGAACTTTTAAAAG.............................................................................. | 16 | 1 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..........................TATGCTGGGAGTCGGTCT.............................................................................................................................................................................................................. | 18 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
Generated: 04/24/2015 at 03:28 AM