ID:

dsi_28001

Coordinate:

2r:21338050-21338199 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.0 -23.9 -23.9

Flybase annnotation

five_prime_UTR [2r_21336796_21338049_+]; exon [2r_21336796_21338049_+]; intron [2r_21338050_21339058_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGGAGCGCGGAGGGAAGTACGAACCATTTGCGAACTCGAGAGGTCGACAAGTAAGTCAGAGCAGAGTAAAACCATACCATCCTTAGATCAGACCCTAAGATATCATAGTAGAAGCAATCGCAGCATAGGACTCCAAATTGTCAAGATATACAGATTTCGTTTGACCACCGATTTGAGATAGCCCTCGGTTGATCTCGAAGGTTCCAGAAAGCAGAGAAGAGTGCTTCGGACTTTTTTCAGATTGGTCCTA
**************************************************....((((((..((((((......)))....(((((........)))))..............((....)).......(((........)))............)))..))))))......((((((((((((...)))).)))))))).**************************************************
Read size # Mismatch Hit Count Total Norm Total M023
head
M024
male body
SRR553487
NRT_0-2 hours eggs
SRR553488
RT_0-2 hours eggs
SRR618934
dsim w501 ovaries
SRR553486
Makindu_3 day-old ovaries
.........................AGTTGCGAACTCGCGAGG............................................................................................................................................................................................................... 18 2 3 2.00 6 0 6 0 0 0 0
..................................................................................................................................................................................................................................CGGACTTTTTTCAGATTGGTC... 21 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................CAGATTTCGTTTGACCAC.................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0
...............AGTACGATCAATTTGAGAACT...................................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0
...............................................................GCGTAGAACCTTACCATCC........................................................................................................................................................................ 19 3 4 0.25 1 0 0 0 1 0 0
.........................................................................................................................................................................................................ATCCAGAAAGCAGAGA................................. 16 1 4 0.25 1 0 0 1 0 0 0
........................................................................................................................................................................................................GTTCCAGAAAGCAGTCAA................................ 18 2 10 0.20 2 0 0 2 0 0 0
..........................................................................................................................................................TGTCGTGTGACCACCGGTT............................................................................. 19 3 11 0.18 2 0 0 0 0 0 2
...........................................................................................................................................................................................GTTGATCTCCAAGGT................................................ 15 1 9 0.11 1 0 0 0 0 1 0
.................................................................GTATAACCTTACCATCCCT...................................................................................................................................................................... 19 3 13 0.08 1 0 0 0 1 0 0
.........................................................................................................................................................................................CTGTTGATCTCCAAGGT................................................ 17 2 18 0.06 1 0 0 0 0 1 0
.................................................................................................................GCGATCGCAGCATGGGA........................................................................................................................ 17 2 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

TCCTCGCGCCTCCCTTCATGCTTGGTAAACGCTTGAGCTCTCCAGCTGTTCATTCAGTCTCGTCTCATTTTGGTATGGTAGGAATCTAGTCTGGGATTCTATAGTATCATCTTCGTTAGCGTCGTATCCTGAGGTTTAACAGTTCTATATGTCTAAAGCAAACTGGTGGCTAAACTCTATCGGGAGCCAACTAGAGCTTCCAAGGTCTTTCGTCTCTTCTCACGAAGCCTGAAAAAAGTCTAACCAGGAT
**************************************************....((((((..((((((......)))....(((((........)))))..............((....)).......(((........)))............)))..))))))......((((((((((((...)))).)))))))).**************************************************
Read size # Mismatch Hit Count Total Norm Total M024
male body
M023
head
SRR553488
RT_0-2 hours eggs
O002
Head
SRR618934
dsim w501 ovaries
SRR553486
Makindu_3 day-old ovaries
SRR553487
NRT_0-2 hours eggs
....................................................................................TCTAGTGTGGGATTC....................................................................................................................................................... 15 1 1 2.00 2 0 0 2 0 0 0 0
................................................................................................................................................................................CTATCGGGAGCCAACTAGAGCT.................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
..................................GAGCTCTCCAGCTGTTCATT.................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
...........................AACGCTTGAGCTCTCCAGCT........................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0
.................................TGAGCTCTCCAGCTGTTCATT.................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................TCGTCTCATTTTGGTATGGTA.......................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................CTAGTTTGTGATTCTATCGT................................................................................................................................................. 20 3 10 0.10 1 0 0 0 0 1 0 0
.........................................CCAGCTGTTTATGCAGTTTC............................................................................................................................................................................................. 20 3 11 0.09 1 0 0 0 0 1 0 0
................................................................................................................................................................AACTGTTGGCTAAAATCT........................................................................ 18 2 15 0.07 1 0 0 0 0 0 1 0
..........................................................................................................................................ACTGTTCTATAGGTCTA............................................................................................... 17 2 19 0.05 1 0 0 0 0 0 0 1
..............................................................................................................................................................................................CGATAGCGTCCAAGGTCTT......................................... 19 3 20 0.05 1 1 0 0 0 0 0 0
......................................................................................................................................................................TGGCGAATCTCAATCGGG.................................................................. 18 3 20 0.05 1 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:21338000-21338249 + dsi_28001 AG-GAGCGCGGAGGGAAGTACGA-------------ACCATTTGCGAACTCGAGAG------------------------------------------------------------------------------------------------------------------------------GTCGACAAGT----AAGTCAGA----G-------CAGA---------GTAAAA---------------------------------------------------C-----CATACCATCCTTAGATCAGACCCTAAGA-----------------------TAT--------------------------------------------------------------------------CATAG-----------------------------------------------------------------------TAG----AAGCAAT-------CGCAGCA----TAGGACTCCAAATTGTCAAGATATACAGATTTCGTTTGACCACCGATTTGAGATAGCCCTCGGTTGATCTCGAAGGTTCCAGAAAGCAGAGAAGAGTGCTTCGGACTTTTTT-------CAGATTG------------------GTCCTA
droSec2 scaffold_23:731545-731794 + AG-GAGCGCGGAGGGAAGTACGA-------------ACCATTTGCGATCTCGAGAG------------------------------------------------------------------------------------------------------------------------------GTCGACAAGT----AAGTTAGA----G-------CAGA---------GTAAAA---------------------------------------------------C-----CATACCATCCTTAGATCAGATCCTAAGA-----------------------TAT--------------------------------------------------------------------------CATAG-----------------------------------------------------------------------TAG----AAGCAAT-------CGCAGCA----TAGGACTCAAAATTGTCAAGATCTACATATTTCGTTTGACCACCGATTTAAGATAGCCCTCGGTTGATCTCGAAGGTTCCAGAAAGCAGAGAAGAGTGCTTCGGACTTTTTT-------CAGATTG------------------GTCCTA
dm3 chr2R:20874661-20874917 + AG-GAGCGCGGAGAGAAGTACGA-------------ACCATTTGCGATTTCAAGAG------------------------------------------------------------------------------------------------------------------------------GTCGACAAGT----AAGTTAGA----GTGAACTGCAGA---------GTAAAA---------------------------------------------------G-----CATACCATCCTTAGATCAGACCCTAATA-----------------------TAT--------------------------------------------------------------------------CACAG-----------------------------------------------------------------------TGG----AAGCAAT-------CACAGCC----TAGGATTCAAAATTGTCAAGATATACAGATTTCCTTTGACCGCCGATTTAAGATAGTCCTCGGTTGATGTCGAAAGTTCCAGAAATCAGAGAAGAGTGCTTCGGACTTTTTT-------CAGATTG------------------GTCCTA
droEre2 scaffold_4845:22247900-22248138 + AG-GGGCGCAGAGGAAAGTGCGG-------------ACCATTTGCGATTTTGA----------------------------------------------------------------------------------------------------------------------------------------GGTAAGTAAGTTAGA----GAGAACTGCAC--------------AT---------------------------------------------------C-----CTTACCATCCCTAGATCAG--------A-----------------------TAT--------------------------------------------------------------------------CATAG-----------------------------------------------------------------------TAACTACAAGCAGT-------CAACACC----T-GGACTCAACATTGTCAGGATAGACAGATTTCCTT-AAGCACAGCATTACGGCAGCCCTCGGTTTATCTCGACGTCTCCGGAAATCGGAACGTAGCA-------CTATT-TCTAGATCCCGATTG------------------GTCCAA
droYak3 2R:20839056-20839262 + GG-A-GAGCGGAGG--------A-------------ACCATTTGCGGTTTTAAAAC------------------------------------------------------------------------------------------------------------------------------GTTGACAAGT----AAGTTACA----GTGAAATGCTCA---------GCAGGC---------------------------------------------------T-----CTTACCAT--------CAGATCCTAAAA-----------------------TAT--------------------------------------------------------------------------CATAG-----------------------------------------------------------------------GAG----AACGAACAGGTGTTC---GCCTAGGTAGGAATCTAAATTTTCAGGATAGATAGATTTACT--------------------------------TCTCGAAGTCTCCAGC-ATAGAAAACTAATA-------ATAC-TT-------CAGATTG------------------GTCCTA
droEug1 scf7180000409464:1448644-1448842 - AA-TAGCCCCGTGGAAAGTCTTA-------------AACATCACCGAGTTCAAAAA------------------------------------------------------------------------------------------------------------------------------CTCCAAAGGT----AAGTAGCA----A-------GCGG---------ATAAAATTGTTCGATACCTATAGGACATAGTTATTAAAATAAGTCTTTAAACCAGACAAAAGCCTTAGTAA--------ATAATCCTAAAA-----------------------TGA--------------------------------------------------------------------------ACTG-----------------------------------------------------------------------GGAT----TGATAGCAAAAAAATG---TC------------------------------------------------------------------------------------------CAAACAGAAATCTTTTCGA------------------------------------------TAA
droBia1 scf7180000301754:5847754-5848054 + GA-GAACGCAGTGGCAGGTCTGA-------------ACCGTGGGCGAATTCAAGCG------------------------------------------------------------------------------------------------------------------------------CTCCAAAGGT----AGGTAAAA-----------------------------AG---------------------------------------------------T-----CAAACATTATTTACGGCACTCCCAGAACTAGCCCACTCGCACTGGTTACCATACTTTGGGCTAAAGGTTAAAATAAGAATACGTTTGGATCTCAGTAGCTTGTAGTTTTGCCATCCTAGGACTTATCAAGTAAGGATTACAAATCAAACTAGGAATAAACGTTATTTCTGCAAACTTGGTTCCTGAGGAAGAATGACCTTGTGGG---------------------------------------------------------------------------------------------------------------------------------------------AT-------TGAAAATAAAGTTCAAGGCCCACAAGTCCTA
droTak1 scf7180000415805:339435-339481 - GA-AAGCGCAGTGGAAAGTCTGA-------------GCCATT-----------GGA------------------------------------------------------------------------------------------------------------------------------CTCCAAAAGT----AAGTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491107:308257-308315 - GG-GAGCACAGT--------------------------CACCAACGAATCGGAGAG------------------------------------------------------------------------------------------------------------------------------CTATAAAAGT----AAGTAGCA--------------AG---------GGAAAA---------------------------------------------------G-----CAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000778233:12987-13003 + GG-GAGCGCAGTGGCAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453858:619433-619632 - AA-ACCCTCGGAAAGACGTCTTC-------------AGCTGAAGCGATCGAAGGCC------------------------------------------------------------------------------------------------------------------------------CTCCAAGGGT----AAGTGAAGTGGAGAAGCATCCAGGAAGCACATTTAAAAATTGTTAGCATTAAAAAGGACTTTGTTCCTG----------------------------------------------------TAATAGTTTTCATTAGCTAGTTACGATAT--------------------------------------------------------------------------TCAGG-----------------------------------------------------------------------GGGATGCAGGTAGC-------CG---AG---CT-GGAATA------------------------------------------------------------------------------------------------AATCTTTT-------TAGAGTA------------------AT--GA
droKik1 scf7180000302366:1020336-1020345 + AG-GGGGGCGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13266:12167318-12167516 + ACAGAGTGCGGACGGGGGCAGGAGGCCTATAGGACAACTACCAACAAGCTCGAGGGCTCTCTGGTAAGTGTGGATTCA--------TGCTCCCCACATCCCACATCCCATACCCCACTCCATACGTCATACTCCCATCCCAGAGCAGTGAGCAGTGGCGGACAAAGA---AGGACTTGAGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-------TAGATCGGTCCTCCAAGGCCATAAA-----G
droBip1 scf7180000396547:312888-313050 - AA-GTGCGGACGGGG--GCGGGCAGCCAAGACAA----CAACTACCAACTCGAGAGTTACCTGGTAAGTGTG---TCAGGAGAGTGTGC--C-----------------TACC-------CTACATCATACTCCCATCTCGGAGCAGTG-----------ACAAAGAACAAGGACTTGAGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-------TAGATCGGTCCTCCAAGACCATAAA-----G

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AG-GAGCGCGGAGGGAAGTACGA-------------ACCATTTGCGAACTCGAGAG------------------------------------------------------------------------------------------------------------------------------GTCGACAAGT----AAGTCAGA----G-------CAGA---------GTAAAA---------------------------------------------------C-----CATACCATCCTTAGATCAGACCCTAAGA-----------------------TAT--------------------------------------------------------------------------CATAG-----------------------------------------------------------------------TAG----AAGCAAT-------CGCAGCA----TAGGACTCCAAATTGTCAAGATATACAGATTTCGTTTGACCACCGATTTGAGATAGCCCTCGGTTGATCTCGAAGGTTCCAGAAAGCAGAGAAGAGTGCTTCGGACTTTTTT-------CAGATTG------------------GTCCTASizeHit CountTotal NormTotalM023
Head
M024
Male-body
M025
Embryo
M053
Female-body
O001
Testis
O002
Head
SRR553485
Ovary
SRR553486
Ovary
SRR553487
Ovary
SRR553488
Ovary
SRR618934
Ovary
V044
Embryo
SRR902008
Ovary
SRR902009
Testis
SRR1275487
Male larvae
SRR1275485
Male prepupae
SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACTTTTTT-------CAGATTG------------------GTC...2111.00110000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATTTCGTTTGACCAC...........................................................................................................1811.00110000000000000000
droSec2
AG-GAGCGCGGAGGGAAGTACGA-------------ACCATTTGCGATCTCGAGAG------------------------------------------------------------------------------------------------------------------------------GTCGACAAGT----AAGTTAGA----G-------CAGA---------GTAAAA---------------------------------------------------C-----CATACCATCCTTAGATCAGATCCTAAGA-----------------------TAT--------------------------------------------------------------------------CATAG-----------------------------------------------------------------------TAG----AAGCAAT-------CGCAGCA----TAGGACTCAAAATTGTCAAGATCTACATATTTCGTTTGACCACCGATTTAAGATAGCCCTCGGTTGATCTCGAAGGTTCCAGAAAGCAGAGAAGAGTGCTTCGGACTTTTTT-------CAGATTG------------------GTCCTASizeHit CountTotal NormTotalM054
Female-body
V113
Male-body
V114
Embryo
V115
Head
No Reads
dm3
AG-GAGCGCGGAGAGAAGTACGA-------------ACCATTTGCGATTTCAAGAG------------------------------------------------------------------------------------------------------------------------------GTCGACAAGT----AAGTTAGA----GTGAACTGCAGA---------GTAAAA---------------------------------------------------G-----CATACCATCCTTAGATCAGACCCTAATA-----------------------TAT--------------------------------------------------------------------------CACAG-----------------------------------------------------------------------TGG----AAGCAAT-------CACAGCC----TAGGATTCAAAATTGTCAAGATATACAGATTTCCTTTGACCGCCGATTTAAGATAGTCCTCGGTTGATGTCGAAAGTTCCAGAAATCAGAGAAGAGTGCTTCGGACTTTTTT-------CAGATTG------------------GTCCTASizeHit CountTotal NormTotalGSM154618
Ovary
GSM154620
Ovary
GSM154621
Ovary
GSM154622
Ovary
GSM180328
Head
GSM180329
Mixed-body
GSM180330
Embryo
GSM180331
Embryo
GSM180332
Embryo
GSM180333
Embryo
GSM180334
Larvae
GSM180335
Disc
GSM180336
Pupae
GSM180337
S2
GSM231091
Ovary
GSM239041
Head
GSM239050
Head
GSM239051
S2
GSM239052
S2
GSM246084
Head
GSM266765
S2
GSM280082
Ovary
GSM280083
Ovary
GSM280084
Ovary
GSM280085
Testis
GSM280086
Ovary
GSM280087
S2-NP
GSM280088
S2-NP
GSM312995
Head
GSM313160
Head
GSM313161
Head
GSM313162
Head
GSM313163
Head
GSM313164
Head
GSM313165
Head
GSM343287
Embryo
GSM379050
Ovary
GSM379051
Ovary
GSM379052
Ovary
GSM379053
Ovary
GSM379054
Ovary
GSM379055
Ovary
GSM379056
Ovary
GSM379057
Ovary
GSM379058
Ovary
GSM379059
Ovary
GSM379060
Ovary
GSM379061
Ovary
GSM379062
Ovary
GSM379063
Ovary
GSM379064
Ovary
GSM379065
Ovary
GSM379066
Ovary
GSM379067
Ovary
GSM424739
S2
GSM424740
S2
GSM424741
S2
GSM467729
Female-body
GSM467730
Female-body
GSM467731
Female-body
M002
CS
M003
Male-body
M004
Male-body
M005
ML-DmD32
M006
ML-DmD32
M029
OSC
M030
OSC
M031
OSC
M032
S2-R+
M033
S2-R+
M034
S2-R+
M035
S2-R+
M036
S2-R+
M037
S2-R+
M038
S2-R+
M039
S2-R+
M048
S2-R+
OSS2
OSS
OSS6
OSS
OSS7
OSS
OSS8
OSS
S1
Head
S10
Embryo
S11
Embryo
S12
Embryo
S13
Embryo
S14
Embryo
S15
S2-GMR
S16
Kc
S17
Larvae
S18
Larvae
S19
Pupae
S2
Head
S20
Pupae
S21
Disc
S22
Head
S23
Female-body
S24
Male-body
S25
Larvae
S26
Larvae
S27
Pupae
S28
Pupae
S29
Head
S3
Male-body
S30
S2-GMR
S31
S2
S32
S2
S33
Kc
S34
Kc
S35
Kc
S4
Female-body
S5
Disc
S6
Embryo
S7
Embryo
S8
S2
S9
Embryo
SRR001337
Head
SRR001338
Head
SRR001339
Head
SRR001340
Head
SRR001341
Head
SRR001342
Head
SRR001343
Head
SRR001344
Head
SRR001345
Head
SRR001346
Head
SRR001347
Head
SRR001348
Head
SRR001349
Head
SRR001664
Head
SRR010951
Ovary
SRR010952
Ovary
SRR010953
Ovary
SRR010954
Ovary
SRR010955
Ovary
SRR010956
Ovary
SRR010957
Ovary
SRR010958
Ovary
SRR010959
Ovary
SRR010960
Ovary
SRR014268
Embryo
SRR014269
Embryo
SRR014270
Embryo
SRR014271
Embryo
SRR014272
Embryo
SRR014273
Ovary
SRR014274
Ovary
SRR014275
Ovary
SRR014276
Ovary
SRR014277
Ovary
SRR014278
Ovary
SRR014279
Ovary
SRR014280
Ovary
SRR014281
Ovary
SRR014282
Ovary
SRR023197
S2
SRR023399
S2
SRR023400
S2
SRR023402
S2
SRR023407
S2
SRR029028
S2
SRR029029
S2
SRR029030
S2
SRR029031
S2
SRR029032
S2
SRR029033
S2
SRR029608
Head
SRR029633
Head
SRR030145
gb3
SRR031692
Head
SRR031693
Head
SRR031694
Head
SRR031696
Head
SRR031697
Head
SRR031698
Head
SRR031699
Head
SRR031700
Head
SRR031701
Head
SRR031702
Head
SRR031703
Head
SRR031704
Head
SRR032092
S2
SRR032093
S2
SRR032094
S2
SRR032095
S2-NP
SRR032096
S2-NP
SRR032152
Head
SRR060643
Testis
SRR060644
Ovary
SRR060645
Testis
SRR060646
Ovary
SRR060647
Ovary
SRR060648
Ovary
SRR060649
Ovary
SRR060650
Testis
SRR060651
Ovary
SRR060652
Testis
SRR060653
Ovary
SRR065151
Ovary
SRR065152
Ovary
SRR065153
Ovary
SRR065154
Ovary
SRR065155
Ovary
SRR065800
Ovary
SRR065801
Ovary
SRR065802
Ovary
SRR065803
Ovary
SRR065804
Ovary
SRR065805
Ovary
SRR065806
Ovary
SRR065807
Ovary
SRR097865
S2-NP
SRR097866
S2-NP
SRR097867
S2-NP
SRR298536
Ovary
SRR298537
Ovary
SRR298711
Ovary
SRR298712
Ovary
SRR317110
Ovary
SRR317111
Ovary
SRR317112
Ovary
SRR317113
Ovary
SRR317114
Ovary
SRR317115
Ovary
SRR317116
Ovary
SRR317117
Ovary
SRR341115
S2
SRR341116
S2
SRR341117
S2
SRR341118
S2
SRR351332
Mixed-body
SRR351333
Mixed-body
T004
OSC
T005
CME-L1
V001
Embryo
V002
Embryo
V003
S2
V006
Female-body
V007
Head
V008
S2
V009
CME-L1
V010
ML-DmD20-C5
V011
Sg4
V012
Male-body
V013
Head
V014
DTT
V015
DreRFHV
V018
Kc167
V019
GM2
V020
S2-R+
V021
ML-DmD21
V022
ML-DmD32
V023
Head
V024
Kc167
V025
S2-R+
V026
1182-2H
V027
ML-DmD21
V028
CME-W1-Cl.8+
V029
ML-DmD9
V030
ML-DmD8
V031
GM2
V032
S1
V033
CME-W1-Cl.8+
V034
ML-DmD16-C3
V035
ML-DmD32
V036
ML-DmD20-C5
V037
S2
V038
S2
V063
Ovary
V0632
Ovary
V064
Ovary
V0642
Ovary
V065
Ovary
V0652
Ovary
V066
Ovary
V0662
Ovary
V067
S2-NP
V073
mbn2
V074
S3
V075
ML-DmBG1-C1
V076
ML-DmBG3-C2
V077
Head
V078
Head
V079
Head
V080
Head
V081
Embryo
V082
Embryo
V083
Male-body
V084
Female-body
V085
CME-W2
V086
Female-body
V088
Ovary
V0882
Ovary
V089
Ovary
V0892
Ovary
V090
Male-body
V091
fGS/OSS
V092
Male-body
V093
Male-body
V094
S2-R+
V095
S2-R+
V096
Ovary
V097
Ovary
V098
Ovary
V125
ML-DmD9
V126
CME-L1
V127
G2
V128
S3
V129
ML-DmBG1-C1
V130
ML-DmBG3-C2
V131
ML-DmD16-C3
V132
ML-DmD32
V133
Sg4
V134
ML-DmD8
V135
CME-W2
V136
Male-body
V137
Head
V138
Male-body
V139
Female-body
V140
Female-body
V141
Female-body
V142
Female-body
V144
OSC
V145
S2
V146
S1
V147
1182-2H
V148
mbn2
GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGGTTGATGTCGAAAGTTCCAGAA..................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAGTGCTTCGGACTTTTT.......................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAGAAGAGTGCTTCGGACTTTTT.......................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCAGAAATCAGAGAAGAGTGCT..................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................................................................................................................................................................................................................................................TAT--------------------------------------------------------------------------CACAG-----------------------------------------------------------------------TGG----AAGCAAT-------CACAGCC----TA....................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................................................................................................................................................................................................................................................................................................................................................T--------------------------------------------------------------------------CACAG-----------------------------------------------------------------------TGG----AAGCAAT-------CACAGCC----TA....................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG-----------------------------------------------------------------------TGG----AAGCAAT-------CACAGCC----......................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAGAAGAGTGCTTCGGACTTTT........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................AAGAG------------------------------------------------------------------------------------------------------------------------------GTCGACAAGT----AAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ACGA-------------ACCATTTGCGATTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....AGCGCGGAGAGAAGTACGG-------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAT-------CACAGCC----TAGGATTCA.............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CGCGGAGAGAAGTACGA-------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTTTGACCGCCGATT......................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATAGTCCTCGGTTGATGT................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......................................ATTTGCGATTTCAAGAG------------------------------------------------------------------------------------------------------------------------------GTCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............................................CGATTTCAAGAG------------------------------------------------------------------------------------------------------------------------------GTCGACAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................AATA-----------------------TAT--------------------------------------------------------------------------CACAG-----------------------------------------------------------------------TGG----AAGCAA.........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCTTCGGACTTTTTT-------CA.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAATCAGAGAAGAGTGCT..................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....AGCGCGGAGAGAAGTACGA-------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GTACGA-------------ACCATTTGCGATTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................GATTTCAAGAG------------------------------------------------------------------------------------------------------------------------------GTCGACAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................AAGAG------------------------------------------------------------------------------------------------------------------------------GTCGACAAGT----AAGTTAGA----GT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............GAGAAGTACGA-------------ACCATTTGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCAGAAATCAGAGAAGAGTGC...................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................................TTTGCGATTTCAAGAG------------------------------------------------------------------------------------------------------------------------------GTCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGAGAAGAGTGCTTCGGACTTTT........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................GA-------------ACCATTTGCGATTTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AG-GGGCGCAGAGGAAAGTGCGG-------------ACCATTTGCGATTTTGA----------------------------------------------------------------------------------------------------------------------------------------GGTAAGTAAGTTAGA----GAGAACTGCAC--------------AT---------------------------------------------------C-----CTTACCATCCCTAGATCAG--------A-----------------------TAT--------------------------------------------------------------------------CATAG-----------------------------------------------------------------------TAACTACAAGCAGT-------CAACACC----T-GGACTCAACATTGTCAGGATAGACAGATTTCCTT-AAGCACAGCATTACGGCAGCCCTCGGTTTATCTCGACGTCTCCGGAAATCGGAACGTAGCA-------CTATT-TCTAGATCCCGATTG------------------GTCCAASizeHit CountTotal NormTotalM055
Female-body
M057
Embryo
V060
Head
V040
Embryo
V107
Male-body
V108
Head
GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGATAGACAGATTTCC....................................................................................................................2011.0010000100
.........AGAGGAAAGTGCGG-------------ACCATTTGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
droYak3
GG-A-GAGCGGAGG--------A-------------ACCATTTGCGGTTTTAAAAC------------------------------------------------------------------------------------------------------------------------------GTTGACAAGT----AAGTTACA----GTGAAATGCTCA---------GCAGGC---------------------------------------------------T-----CTTACCAT--------CAGATCCTAAAA-----------------------TAT--------------------------------------------------------------------------CATAG-----------------------------------------------------------------------GAG----AACGAACAGGTGTTC---GCCTAGGTAGGAATCTAAATTTTCAGGATAGATAGATTTACT--------------------------------TCTCGAAGTCTCCAGC-ATAGAAAACTAATA-------ATAC-TT-------CAGATTG------------------GTCCTASizeHit CountTotal NormTotalM026
Head
M043
Female-body
M056
Embryo
V046
Embryo
V052
Head
V058
Head
V120
Male-body
SRR1275488
Male larvae
SRR1275486
Male prepupae
SRR1275484
Male prepupae
GSM1528802
follicle cells
.........GGAGG--------A-------------ACCATTTGCGGTTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
droEug1
AA-TAGCCCCGTGGAAAGTCTTA-------------AACATCACCGAGTTCAAAAA------------------------------------------------------------------------------------------------------------------------------CTCCAAAGGT----AAGTAGCA----A-------GCGG---------ATAAAATTGTTCGATACCTATAGGACATAGTTATTAAAATAAGTCTTTAAACCAGACAAAAGCCTTAGTAA--------ATAATCCTAAAA-----------------------TGA--------------------------------------------------------------------------ACTG-----------------------------------------------------------------------GGAT----TGATAGCAAAAAAATG---TC------------------------------------------------------------------------------------------CAAACAGAAATCTTTTCGA------------------------------------------TAASizeHit CountTotal NormTotal
No Reads
droBia1
GA-GAACGCAGTGGCAGGTCTGA-------------ACCGTGGGCGAATTCAAGCG------------------------------------------------------------------------------------------------------------------------------CTCCAAAGGT----AGGTAAAA-----------------------------AG---------------------------------------------------T-----CAAACATTATTTACGGCACTCCCAGAACTAGCCCACTCGCACTGGTTACCATACTTTGGGCTAAAGGTTAAAATAAGAATACGTTTGGATCTCAGTAGCTTGTAGTTTTGCCATCCTAGGACTTATCAAGTAAGGATTACAAATCAAACTAGGAATAAACGTTATTTCTGCAAACTTGGTTCCTGAGGAAGAATGACCTTGTGGG---------------------------------------------------------------------------------------------------------------------------------------------AT-------TGAAAATAAAGTTCAAGGCCCACAAGTCCTASizeHit CountTotal NormTotal
No Reads
droTak1
GA-AAGCGCAGTGGAAAGTCTGA-------------GCCATT-----------GGA------------------------------------------------------------------------------------------------------------------------------CTCCAAAAGT----AAGTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GG-GAGCACAGT--------------------------CACCAACGAATCGGAGAG------------------------------------------------------------------------------------------------------------------------------CTATAAAAGT----AAGTAGCA--------------AG---------GGAAAA---------------------------------------------------G-----CAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GG-GAGCGCAGTGGCAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AA-ACCCTCGGAAAGACGTCTTC-------------AGCTGAAGCGATCGAAGGCC------------------------------------------------------------------------------------------------------------------------------CTCCAAGGGT----AAGTGAAGTGGAGAAGCATCCAGGAAGCACATTTAAAAATTGTTAGCATTAAAAAGGACTTTGTTCCTG----------------------------------------------------TAATAGTTTTCATTAGCTAGTTACGATAT--------------------------------------------------------------------------TCAGG-----------------------------------------------------------------------GGGATGCAGGTAGC-------CG---AG---CT-GGAATA------------------------------------------------------------------------------------------------AATCTTTT-------TAGAGTA------------------AT--GASizeHit CountTotal NormTotal
No Reads
droKik1
AG-GGGGGCGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
ACAGAGTGCGGACGGGGGCAGGAGGCCTATAGGACAACTACCAACAAGCTCGAGGGCTCTCTGGTAAGTGTGGATTCA--------TGCTCCCCACATCCCACATCCCATACCCCACTCCATACGTCATACTCCCATCCCAGAGCAGTGAGCAGTGGCGGACAAAGA---AGGACTTGAGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-------TAGATCGGTCCTCCAAGGCCATAAA-----GSizeHit CountTotal NormTotalM044
Female-body
M058
Embryo
V039
Embryo
V055
Head
V105
Male-body
V106
Head
...GAGTGCGGACGGGGGCAGGAGGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002000002
..........................................AACAAGCTCGAGGGCTCTCTGGTAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100
...GAGTGCGGACGGGGGCAGGAGGCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
....................................ACTACCAACAAGCTCGAGGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
............................................................................................................................................................................GACTTGAGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-------TAGATCGGTCCTCC.................2611.001010000
...............................................................................................................................................................GACAAAGA---AGGACTTGAGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-------TAG............................2511.001010000
.......................GGCCTATAGGACAACTACCAACAAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
..........................................................................................................................ACGTCATACTCCCATCCCAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....................GGAGGCCTATAGGACAACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droBip1
AA-GTGCGGACGGGG--GCGGGCAGCCAAGACAA----CAACTACCAACTCGAGAGTTACCTGGTAAGTGTG---TCAGGAGAGTGTGC--C-----------------TACC-------CTACATCATACTCCCATCTCGGAGCAGTG-----------ACAAAGAACAAGGACTTGAGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-------TAGATCGGTCCTCCAAGACCATAAA-----GSizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 07:27 PM