ID:

dsi_28

 Coordinate:

node_17753:671-727 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.3 -16.3 -16.0 -15.8

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron+
mature
star
  1. 2r:2236456-2236478 -
  2. 3l:24054889-24054911 +
  3. dsi_28  node_17753:705-727 -

Sense Strand Reads

CGTGGCAACATGGGTCTACAAATTGCGCTGCACCAATGTCTCTGGAATCTGTATGCTGAATCTCAACCTTCTGTTGCTGTTATAGTTCCTGAGATCTCGACGTTCAAACGGACAGACGGACATGTCCAGATCGGCTCGGCCATTGATCCTGATCAAG
***********************************...((.......((((((((.(((((((((.....((((.......))))....)))))).))).)))....))))).....))************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 M053
female body
 M025
embryo
 SRR902009
testis
 O001
Testis
 M024
male body		 M023
head
.............................................................................TGTTATAGTTCCTGAGATCTCGACGTT..................................................... 27 0 1 34.00 34 8 18 4 4 0 0 0 0 0 0 0 0
............................................................................................................CGGACAGACGGACATGTCCAGATCGGC...................... 27 0 1 28.00 28 23 1 3 0 0 1 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACGGACA........................................... 25 0 3 26.00 78 35 9 13 15 0 0 1 5 0 0 0 0
..................................................GTATGCTGAATCTCAACCTTCTGTT.................................................................................. 25 0 1 25.00 25 3 15 1 4 0 0 2 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTT..................................................... 23 0 20 24.70 494 180 0 312 0 0 0 0 0 0 0 2 0
.................................................................................ATAGTTCCTGAGATCTCGACGTTCAA.................................................. 26 0 2 14.00 28 8 8 3 5 0 2 1 1 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTTCAAA................................................. 27 0 2 13.50 27 7 3 11 3 1 1 0 0 0 0 1 0
.............................................................................TGTTATAGTTCCTGAGATCTCGACGT...................................................... 26 0 1 13.00 13 5 3 0 1 3 1 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACGGACAGA......................................... 27 0 2 12.00 24 10 0 10 1 1 0 1 1 0 0 0 0
..................................................GTATGCTGAATCTCAACCTTCTGTTGC................................................................................ 27 0 1 9.00 9 4 4 0 0 0 0 1 0 0 0 0 0
..........................................................................TGCTGTTATAGTTCCTGAGATCTCGA......................................................... 26 0 1 9.00 9 5 3 0 1 0 0 0 0 0 0 0 0
..................................................GTATGCTGAATCTCAACCTTCTGT................................................................................... 24 0 1 8.00 8 1 1 0 1 0 0 4 1 0 0 0 0
................................................................................TATAGTTCCTGAGATCTCGACGTTCAAA................................................. 28 0 2 7.50 15 6 5 2 2 0 0 0 0 0 0 0 0
.............................................................................TGTTATAGTTCCTGAGATCTCGACG....................................................... 25 0 1 7.00 7 1 4 0 1 0 0 1 0 0 0 0 0
..........................................................................TGCTGTTATAGTTCCTGAGATCTCGACG....................................................... 28 0 1 6.00 6 2 4 0 0 0 0 0 0 0 0 0 0
..................................................GTATGCTGAATCTCAACCTTCTGTTG................................................................................. 26 0 1 4.00 4 0 3 0 0 0 0 1 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACGGAC............................................ 24 0 3 3.33 10 3 0 3 2 0 1 0 1 0 0 0 0
................................................................................................................................GATCGGCTCGGCCATTGATCCTGA..... 24 0 1 3.00 3 2 0 0 0 0 0 1 0 0 0 0 0
............................TGCGCCAATGTCTCTGGAATCTGTA........................................................................................................ 25 1 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGT...................................................... 22 0 20 2.85 57 0 0 0 0 57 0 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACGGA............................................. 23 0 3 2.67 8 4 3 0 0 0 1 0 0 0 0 0 0
................................................................................TATAGTTCCTGAGATCTCGACGTTCAA.................................................. 27 0 2 2.50 5 1 2 0 1 0 1 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTTCAAT................................................. 27 1 2 2.00 4 0 0 2 0 0 0 0 2 0 0 0 0
............................................................................................................CGGACAGACGGACATGTCCAGATCGGCTCGGA................. 32 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
......................................................................................TCCTGAGATCTCGACGTTCAAACGG.............................................. 25 0 2 2.00 4 0 0 0 0 0 2 0 0 0 2 0 0
..........................................................................................................................TGTCCAGATCGGCTCGGCCATTGA........... 24 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0
.......................................................................TGTTGCTGTTATAGTTCCTGAGATCT............................................................ 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.............................................................................TGTTATAGTTCCTGAGATCTCGA......................................................... 23 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTTCAAAA................................................ 28 1 2 2.00 4 1 1 0 2 0 0 0 0 0 0 0 0
.............................................................................TGTTATAGTTCCTGAGATCTCGAC........................................................ 24 0 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................CGGATAGACGGACATGTCCAGATCGGC...................... 27 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACGGACAG.......................................... 26 0 2 2.00 4 3 0 0 0 0 1 0 0 0 0 0 0
..................................................GTATGCTGAATCTCAACCTTCTGTTGCT............................................................................... 28 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................GCTGTTATAGTTCCTGAGATCTCGACG....................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TTCAAACGGACAGACGGACATGTC............................... 24 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0
....................................TGTCTCTGGAATCTGTATGCTGAATC............................................................................................... 26 0 5 2.00 10 0 0 8 2 0 0 0 0 0 0 0 0
..................................AATGTCTCTGGAATCTGTATGCTGA.................................................................................................. 25 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATGTCGACGTTCAA.................................................. 26 1 4 1.75 7 2 5 0 0 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTAAGATCTCGACGTTCAA.................................................. 26 1 15 1.60 24 0 0 1 2 0 20 1 0 0 0 0 0
......................................................................................TCCTGAGATCTCGACGTTCAAACGGAC............................................ 27 0 2 1.50 3 0 0 0 0 0 2 0 1 0 0 0 0
...............................................................................TTATAGTTCCTGAGATCTCGACGTTCA................................................... 27 0 20 1.35 27 0 0 0 3 0 0 0 24 0 0 0 0
...................................................................................AGTTCCTGAGATCTCGACGTTCAAA................................................. 25 0 3 1.33 4 2 2 0 0 0 0 0 0 0 0 0 0
..................................................................................TAGTTCCTGAGATCTCGACGTTCAAA................................................. 26 0 3 1.33 4 2 0 1 1 0 0 0 0 0 0 0 0
......................................................................................TCCTGAGATCTCGACGTTCAAACGGA............................................. 26 0 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0 0
..TGGCAACATGGGTCTACAAATTGCGC................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................TGCTGAATCTCAACCTTCTGTTGCT............................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................TATGCTGAATCTCAACCTTCTGTTG................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................CGGACGGACGGACATGTCCAGATCGGC...................... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................TGCTGTTATAGTTCCTGAGATCTCG.......................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................GTATGCTGAATCTCAACCTTCTG.................................................................................... 23 0 3 1.00 3 0 1 0 2 0 0 0 0 0 0 0 0
...................................ATGTCTCTGGAATCTGTATGCTGAA................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................TGTATGCTGAATCTCAACCTTCTGT................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................CGGACAGACGGACATGTCCAGATCGGCTC.................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................TTGCGCTGCGCCAATGTCTCTGGAAT............................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................GCTGTTATAGTTCCTGAGATCTCGACGT...................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................TATGCTGAATCTCAACCTTCTGTTGC................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CGGACATGTCCAGATCGGCTC.................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................ACAAATTGCGCTGCGCCAA......................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................AGACGGACATGTCCAGATCGGCTC.................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................GCTGTTATAGTTCCTGAGATCTCGAC........................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TCCAGATCGGCTCGGCCATTGATC......... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................CAAACGGACAGACGGACATGTCCAGA........................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CGGACATGTCCAGATCGGCTCGGCC................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................CGACGTTCAAACGGACAGACGGACA................................... 25 0 3 1.00 3 1 1 0 0 0 1 0 0 0 0 0 0
.............................................................................TGTTATAGTTCCTGAGATC............................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
CGTGGCAACATGGGTCTACAAATTGC................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................TTCAAACGGACAGACGGACATGTCCAT............................ 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................AGTTCCTGAGATCTCGACGTTCAAAC................................................ 26 0 3 1.00 3 0 0 2 1 0 0 0 0 0 0 0 0
.GTGGCAACATGGGTCTACAAATTGCGC................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................TGCTGTTATAGTTCCTGAGATC............................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................TTATGCTGAATCTCAACCTTCTGTTGC................................................................................ 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................TGCTGTTATAGTTCCTGAGATCT............................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CGGCTCGGCCATTGATCCTGATCA.. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..............TCTACAAATTGCGCTGCACCAATGTCTC................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................TGCTGTTATAGTTCCTGAGATCTCGAC........................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................TGTCTCTGGAATCTGTATGCTGAA................................................................................................. 24 0 5 0.80 4 0 0 2 2 0 0 0 0 0 0 0 0
.................................................................................................TGACGTTCAAACGGACAGACTGACAT.................................. 26 2 10 0.60 6 2 1 0 1 0 2 0 0 0 0 0 0
.................................................................................................CGACGTTCAAACGGACAGACGGACATG................................. 27 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................ATAGTTCCTGCGATCTCGACGTTCAA.................................................. 26 1 4 0.50 2 0 0 0 2 0 0 0 0 0 0 0 0
................................................................................TATAGTTCCTGAGATCTCGACGTTCAAAA................................................ 29 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TCTCGTCGTTCAAACGGACAGACGGA..................................... 26 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................TCCTGAGATCTCGACGTTCAAACGGACA........................................... 28 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................TCTCTGGAATCTGTATGCTGAATCTC............................................................................................. 26 0 4 0.50 2 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATGTCGACGTTCAAA................................................. 27 1 4 0.50 2 0 2 0 0 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTTCAATA................................................ 28 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................TTCCTGAGATCTCGACGTTCAAACGGAC............................................ 28 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................TAGTTCCTGAGATCTCGACGTTCA................................................... 24 0 20 0.50 10 0 0 0 0 0 1 0 9 0 0 0 0
..........................................................................................GAGATCTCGACGTTCAAACGGACAG.......................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TCCTGAGATCTCGACGTTCAAACGGACAGA......................................... 30 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACGGACAGT......................................... 27 1 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0 0
....................................TGTCTCTGGAATCTGTATGCTGAAT................................................................................................ 25 0 5 0.40 2 0 0 0 2 0 0 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAATGGACA........................................... 25 1 5 0.40 2 0 0 2 0 0 0 0 0 0 0 0 0
....................................TGTCTCTGGAATCTGTATGCTGA.................................................................................................. 23 0 5 0.40 2 0 0 0 2 0 0 0 0 0 0 0 0
........................................................................................................TAAACGGACAGACGGACATCT................................ 21 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................GACGTTCAAACGGACAGACGGACA................................... 24 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................TATAGTTCCTTAGATCTCGACGTTCAA.................................................. 27 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TCCTGAGATCTCGACGTTCAAA................................................. 22 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................TGACGTTCAAACGGACAGACTGACA................................... 25 2 12 0.33 4 0 1 0 0 0 2 0 0 1 0 0 0
........................................TCTGGAATCTGTATGCTGAATCTCAACC......................................................................................... 28 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................TATAGTTCTTGAGATCTCGACGTTCAA.................................................. 27 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTGCAA.................................................. 26 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................TCCTGAGATCTCGACGTTCAA.................................................. 21 0 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................CGACGTTCAAACGGACAGACGGA..................................... 23 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACGGACAT.......................................... 26 1 12 0.33 4 1 0 1 0 0 2 0 0 0 0 0 0
.......................................CTCTGGAATCTGTATGCTGAATCTCAAC.......................................................................................... 28 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................ATGTCTCTGGAATCTGTATGCT.................................................................................................... 22 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................TGGAATCTGTATGCTGAATCTCAACC......................................................................................... 26 0 6 0.33 2 0 0 0 0 1 1 0 0 0 0 0 0
..................................................................................TAGTTCCTGAGATCTCGACGTTCAA.................................................. 25 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................TGGAATCTGTATGCTGAATCTCAAC.......................................................................................... 25 0 6 0.33 2 0 1 0 0 0 1 0 0 0 0 0 0
...............................................TCTGTATGCTGAATCTCAACCTT....................................................................................... 23 0 20 0.30 6 6 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TTCAAACGGACAGACGGACATG................................. 22 0 7 0.29 2 0 0 1 0 0 0 0 0 1 0 0 0
..................................................................................TAGTTCCTGAGATCTCGACGTCCAAAA................................................ 27 2 8 0.25 2 0 0 2 0 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTTAAA.................................................. 26 1 8 0.25 2 0 0 0 1 0 1 0 0 0 0 0 0
.........................................CTGGAATCTGTATGCTGATTC............................................................................................... 21 1 8 0.25 2 0 0 0 0 0 0 0 0 0 0 0 2
................................................................................TATGGTTCCTGAGATCTCGACGTTCAA.................................................. 27 1 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0
..........................................TGGAATCTGTATGCTGAA................................................................................................. 18 0 8 0.25 2 0 0 0 0 2 0 0 0 0 0 0 0
..................................................................................TACTTCCTGAGATCTCGACGTTCAAA................................................. 26 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTAAAACGGAC............................................ 24 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................TGTCTCTGGAATCTGTATGCTGAATCTC............................................................................................. 28 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGAGAAA.................................................. 26 3 13 0.23 3 2 0 1 0 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGAGAAAA................................................. 27 3 9 0.22 2 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTCCAA.................................................. 26 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACTGACA........................................... 25 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................ACGTTCAAACGGACA........................................... 15 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................TATAGTTCCTGAGATCTCGACTTTCAA.................................................. 27 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................GGACGGACATGTCCAGATCGGC...................... 22 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................CGACTTTCAAACGGACAGACGGA..................................... 23 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................TGTCTCTGGAATCTGTATGCTG................................................................................................... 22 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTTAGATCTCGACGTTCAAAT................................................ 28 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTTCTA.................................................. 26 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................GACGTTTAAACGGACAGACTGACAT.................................. 25 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATATCGACGTTCAA.................................................. 26 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................TTATAGTTCCTGAGATCTCGACGAGAAA.................................................. 28 3 11 0.18 2 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTTGACGTTCAAA................................................. 27 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................ACAGACGGACATGTCCAGATC......................... 21 0 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACCGACA........................................... 25 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTTAAAA................................................. 27 1 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................GACAGACGGACATGTCCAGATC......................... 22 0 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................TATAGTTCCTGAGATCTCGACGTTAAAA................................................. 28 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GACAGACGGACATGTCCAGAT.......................... 21 0 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................GGAGATCTCGACGTTCAAACGGACA........................................... 25 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TGAGATGTCGACGTTCAAACGGACAGA......................................... 27 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTTGACGTTCAA.................................................. 26 1 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................CGACGGTCAAACGGACAGACGGACA................................... 25 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................GGAGATCTCGACGTTCAAACGGAC............................................ 24 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................TGGAATCTGTATGCTGAATCTCAA........................................................................................... 24 0 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................TATAGTTCCTGAGATCTCGACGTTCA................................................... 26 0 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0 0
...................................................................................................................ACGGACATGACCAGATCGGCTCGGC................. 25 1 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................TGTCTCTGGAAACTGTATGCTGAATC............................................................................................... 26 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACTTTCAA.................................................. 26 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................TTAGTTCCTGAGATCTCGACGTTCAAA................................................. 27 1 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................TCTGTATGCTGAATCTCAACCTTTTCT................................................................................... 27 2 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................TATAGTTCCTGTGATCTCGACGTTCAAA................................................. 28 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................TATAGTTCCTGAGATCTCGACGAGAAAA................................................. 28 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTAAAA.................................................. 26 2 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTTAAAAA................................................ 28 2 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTTCAAAAA............................................... 29 2 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACGGACAGACA....................................... 29 1 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................ACCCTCTGTTGCGGTTA........................................................................... 17 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGGCGTAAAA.................................................. 26 3 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................TTGACGTTCAAACGGACAGACTGACAT.................................. 27 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................TGTCTCTGGAATCTGTATGCT.................................................................................................... 21 0 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................TATAGTTCCTGAGATCTCGACGTTC.................................................... 25 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
..............................................................................GTTATAAATCCTTAGATCTCGACGTT..................................................... 26 3 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................TCAAACGGACAGACGG...................................... 16 0 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTTCTAAAA............................................... 29 3 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................TTTCTCTGGAATCTGTATGGTGAA................................................................................................. 24 2 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................TCTGTATGCTGAATCTCAACCTTC...................................................................................... 24 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................TATAGTTCCTGAGATCTCGACTTTAAAA................................................. 28 2 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................................ATCTGTATGCTGAATCTCAACCTTC...................................................................................... 25 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0
.........................................CTGGAAACTGTATGCTGAATC............................................................................................... 21 1 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................TGACGTTCAAACGGACAGACTGACATG................................. 27 2 10 0.10 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................GTATGCTGAATCTCAACCTTCT..................................................................................... 22 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TTATAGTTCCTGAGATCTCGACGTTC.................................................... 26 0 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0 0
......................................................................................TCCTGAGATCTCGACGTTCGA.................................................. 21 1 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................TAAGATCTCGACGTTCAAACGGACAGA......................................... 27 1 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................TCTCGACGTTGAAACG............................................... 16 1 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................TAAACGGACAGACGGACATGTCTAGA........................... 26 2 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................GTTTAAACGGACAGACTGACATG................................. 23 2 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................TGACATGTCCAGATCGTCTCGGCGA............... 25 3 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................ATAGTTCCTAAGATCTCGACGTTCAAA................................................. 27 1 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................TATAGTTCCTAAGATCTCGACGTTCAAA................................................. 28 1 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................TATAGTTCCTAAGATCTCGACGTTCAA.................................................. 27 1 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACGGAAAT.......................................... 26 2 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACGGACTT.......................................... 26 2 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................GATGTCTCTGAAATCTGTATG...................................................................................................... 21 2 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
..TGGCAACATGGGTCT............................................................................................................................................ 15 0 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCG.......................................................... 18 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................AATCTGTATGCTGAATCTCAACCTT....................................................................................... 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCA................................................... 17 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................AATACCAACCTTTTGTTGCT............................................................................... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTTCA................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACGGTTT........................................... 25 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
..............................................ATCTGTATGCTGAATCTCAACCT........................................................................................ 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTCCTGAGATCTCGACGTTCA................................................... 21 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................ATAGTTCCTAAGATCTCGACGTTAAA.................................................. 26 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................TTGAATCTGTATGCTGAATCTCAAGCT........................................................................................ 27 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................TATAGTTCCTGAGATC............................................................. 16 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................GTATGCTGAATCTCAACCTTC...................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................AGTTCCTAAGATCTCGACGTTCAAAT................................................ 26 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGAC........................................................ 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
......................TTACGCTGAACCAAAGTCT.................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GCACCGTTGTACCCAGATGTTTAACGCGACGTGGTTACAGAGACCTTAGACATACGACTTAGAGTTGGAAGACAACGACAATATCAAGGACTCTAGAGCTGCAAGTTTGCCTGTCTGCCTGTACAGGTCTAGCCGAGCCGGTAACTAGGACTAGTTC
**************************************...((.......((((((((.(((((((((.....((((.......))))....)))))).))).)))....))))).....))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M053
female body
 M025
embryo
 O002
Head
 M023
head
 SRR902009
testis
 M024
male body
.................................................................TGGAAGACAACGACAATATCAAGGAC.................................................................. 26 0 1 85.00 85 45 29 7 0 3 1 0 0 0 0 0 0
...........................................................................CGACAATATCAAGGACTCTAGAGC.......................................................... 24 0 1 38.00 38 16 20 0 0 1 1 0 0 0 0 0 0
..................................................................GGAAGACAACGACAATATCAAGGAC.................................................................. 25 0 1 12.00 12 8 3 1 0 0 0 0 0 0 0 0 0
........................................................................CAACGACAATATCAAGGACTCTAGAGC.......................................................... 27 0 1 8.00 8 3 2 0 0 3 0 0 0 0 0 0 0
................................................................TTGGAAGACAACGACAATATCAAGGAC.................................................................. 27 0 1 6.00 6 0 4 1 1 0 0 0 0 0 0 0 0
.....................................................................AGACAACGACAATATCAAGGACTCTAG............................................................. 27 0 1 6.00 6 0 3 0 0 1 1 1 0 0 0 0 0
...................................................................GAAGACAACGACAATATCAAGGAC.................................................................. 24 0 1 3.00 3 0 1 2 0 0 0 0 0 0 0 0 0
................................................................................................AGCTGCAAGTTTGCCTGTCTGCCTGT................................... 26 0 3 2.33 7 0 1 0 2 2 0 0 2 0 0 0 0
..................................................................................................................CTGCCTGTACAGGTCTAGCCGAGC................... 24 0 1 2.00 2 0 0 0 1 0 0 1 0 0 0 0 0
.................................................................AGGAAGACAACGACAATATCAAGGAC.................................................................. 26 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.................................................................TGGAAGACAACGACAATATCAAGGACT................................................................. 27 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................TAGCCGAGCCGGTAACTAGGAC...... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................GAAGACAACGACAATATCAAGGACT................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................TGCCTGTACAGGTCTAGCCGAGC................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................CAACGACAATATCAAGGACTCTAG............................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................ACAACGACAATATCAAGGACTCTAGAGC.......................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......TGTACCCAGATGTTTAACGCGACGT............................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TGCCTGTACAGGTCTAGCCGAGCCG................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................TACAGAGACCTTAGACATACGACTT................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................GAGTTGGAAGACAACGACAATATCAAGGAC.................................................................. 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................ATGTTTAACGCGACGT............................................................................................................................. 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................AGAGTTGGAAGACAAC................................................................................. 16 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................CTGTACAGGTCTAGCCGAGCCGGAA.............. 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................TGGAAGACAACGACAATATCAAGGGC.................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TTGCCTGTACAGGTCTAGCCGAGCCG................. 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................GAGTTGGAAGACAACGACAATAT......................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............AGATGTTTAACGCGACGTGGTT......................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................CAACGACAATATCAAGGACTCTAGAGCT......................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................TGGAAGACAACGACAATATCAAGGA................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................GTCTGCCTGTACAGGTCTAGCCGAGC................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................ACGACAATATCAAGGACTCTAGAGC.......................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................TGAAGACAACGACAATATCAAGGAC.................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CTAGCCGAGCCGGTAAC............ 17 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................GTACAGGTCTAGCCGAGCCGG................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................AAGACAACGACAATATCAAGGAC.................................................................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................AGAGCTGCAAGTTTGCCTGTCTGCCTGT................................... 28 0 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................GTACAGGTCTAGCCGAGCCGGTAAC............ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................CCGGTAACTAGGACTAGTT. 19 0 6 1.00 6 0 0 0 0 0 0 0 0 6 0 0 0
..........ACCCAGATGTTTAACGCGACGTGGTT......................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................CAGGTCTAGCCGAGCCGGTAAC............ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................TACAGAGACCTTAGACATACAACT.................................................................................................. 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................AAAGACAACGACAATATCAAGGAC.................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................ATGTTTAACGCGACGTGG........................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................ACAGAGACCTTAGACATACGACTT................................................................................................. 24 0 5 0.60 3 0 0 0 1 1 0 0 0 0 0 1 0
......................................................................................AGGACTCTAGAGCTGCAAGTTTGCCTG............................................ 27 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................AGCTGCAAGTTTGCCTGTCTGCCTGTAC................................. 28 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CTGTACAGGTCTAGCCGA..................... 18 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................GAGCTGCAAGTTTGCCTGT........................................... 19 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................TGCAAGTTTGCCTGTC.......................................... 16 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TGACAATATCAAGGACTCTAGAGC.......................................................... 24 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................CGACAATATCAAGGAC.................................................................. 16 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TGCAAGTTTGCCTGTCTGCCTGT................................... 23 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................CGCCTGTACAGGTCTAGCCGAGC................... 23 1 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................TCAATATCAAGGACTCTAGAGCTGCA...................................................... 26 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................AACTGCAAGTTTGCCTGTCTGACTGT................................... 26 2 11 0.27 3 1 0 0 0 1 1 0 0 0 0 0 0
..........................................................................................................TTGCCTGTCTGCCTATACTGGTCTAGC........................ 27 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................TAGAGCTGCAAGTTTGCCTG............................................ 20 0 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0
...................................TACAGAGACCTTAGACATA....................................................................................................... 19 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................CAGGTCTAGCCGAGCCGATAACTAGGAC...... 28 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................CTGCAAATTTGCCTGTCTGACTGTA.................................. 25 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................TACAGAGACCTTAGACA......................................................................................................... 17 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................GGCGAGCCGGGAACTAGG........ 18 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................TCTAGAGCTGCAAGTT.................................................. 16 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................AGGTCGAGCCGCGCCGGT............... 18 2 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................TTACAGAGATCTTAGACATACGACTT................................................................................................. 26 1 20 0.15 3 0 0 0 0 0 0 0 0 0 0 3 0
.....................................................................................................................................CGAGCCGGGAACGAGGA....... 17 2 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................AGAGACCTTAGACATACGCCTT................................................................................................. 22 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CTGCCTGTACAGGTCTAGC........................ 19 0 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................AACTGCAAGTTTGCCTGTCTGACTGTA.................................. 27 2 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................TGCCTGTACAGGTCTAGC........................ 18 0 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................ATATCAAGGACTCTAGAGCTGCAAGT................................................... 26 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................ATATCAAGGACTCTAGAGCTGCAA..................................................... 24 0 20 0.10 2 0 1 0 1 0 0 0 0 0 0 0 0
..............................................TAGACATACGACTTAGAGT............................................................................................ 19 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0
....................................ACAGAGACCTTAGACATACG..................................................................................................... 20 0 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................ATCAAGGACTCTAGAGCTGCAAGT................................................... 24 0 20 0.10 2 0 0 0 0 1 0 1 0 0 0 0 0
....................................................................................CAAGGACTCTAGAGCTGCAAG.................................................... 21 0 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0 0
......GTGTACCACGATGTTTAAC.................................................................................................................................... 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0
...................................................ATACGACTTAGAGTTGGAAGA..................................................................................... 21 0 20 0.10 2 0 0 1 0 0 0 0 0 0 0 1 0
...............................................AGACATACGACTTAGAGTTG.......................................................................................... 20 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
..................................................................................................................CTGCCTGTACAGGTCTA.......................... 17 0 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................CGAGCCGGTTTCTAGG........ 16 2 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
...............................................................................................................TGTCTGCCTGTACAGGTC............................ 18 0 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................AACTAGAGCTGCAAGTTTGCCTGT........................................... 24 2 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CTGCCTGTACAGGTCT........................... 16 0 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................TACAGAGACCTTAGA........................................................................................................... 15 0 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................CTGCAAATTTGCCTGTCTGACTGT................................... 24 2 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................AGAGACCTTAGACATA....................................................................................................... 16 0 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................TCAAGGACTCTAGAGCTGCAAGT................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GAGCCGGGAACAAGGAC...... 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................TAGACATACGACTTAGAGTTGGAA....................................................................................... 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................GGACTCTAGAGCTGCAAG.................................................... 18 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................ACAGACTTTAGACATGCGACTT................................................................................................. 22 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................AAAGCCCTAGCCGAGCCGG................ 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................AGACATACGACTTAGAGT............................................................................................ 18 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................TATCAAGGACTCTAGAGCTGCAAGT................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................CAAGTTTGCCCGTCTGCCTTA................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................ATATCAAGGACTCTAGAGCTG........................................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
......................................................CGACTTAGAGTTGGAAG...................................................................................... 17 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................CGACTTAGAGTTGGAAGA..................................................................................... 18 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 node_17753:621-777 - dsi_28 CGTGGCAACATGGGTCTACAAATTGCGCTGCACCAATGTCTCTGGAATCTGTATGCTGAATCTCAACCTTCTGTTGCTGTTATAGTTCCTGAGATCTCGACGTTCAA------------A----CGGACAGACGGACATGTCCAGATCGGCTCGGCCATTGATCCTGATCAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_281:11265-11387 - ------------------------------------------------------------------------------------------GAGATCTCGACGTTCAA------------A----CGGACAGACGGACATGTCCAGATCGGCTCGGCCATTGATCCTGATCAAGAACGC---A----TAT--ACTTTATATGGTCGGTTTT------------------------------------------------------------------------------------------------------------------------------------------------------CGAAAAAAAATTCACAGTT--ATCCCACTT
dm3 chrX:22369829-22370002 + ------------------------------------------------------------------------------------------CAACCTTAGTGGGT---------------AGTGACCGAGAGATGGTCACGTGT--CTCAAGTCGGCC------------CCAAAATAG---C----CATCTCCCCATTTATGCCGCAATT-----------------------------------------------CATATCAGAACAACAACAACAAT--TT-----------GGATCAAGC--CACGAAGG--------GCTTAATAAAAAGTTCCACCGCGATCTTTGAACTTTTCCCATGG------------------TCG--A
droEre2 scaffold_4784:24793643-24793807 - ------------------------------------------------------------------------------------------CAGATCGAGCCGTTCAT------------A----CGGACAGACGGTCATAGCCAGATCGACTCGGGTATTGATCCTGATCAAGAATAT---A----TAT--AATTTATATGGTCGAAAACGTTTCCTTCTGCCTGTTA-CACAC------T----TCTCAGAAATTCTAGT--------------ATATT-------C--T----CTAAAAGTAAA------TGG-------------------------------------------TAAAA-----------------------AAAC
droYak3 v2_chr2h_random_005:817623-817785 - ------------------------------------------------------------------------------------------GAGATCTCGACGTTCAT------------ACGAACGGACAGACGGACATGGCCAGATCGACTCGGCTATTGATCCTGATCAAGAATAT---A----TAT--ACTTTATATGGTC-----------CTTCTGCCTGTTA-CATAC------T----TTTCAACGAATCTATT--------------ATATCCTTTTA-T--T----CTACGAGTAAC------GGG-------------------------------------------TATAAAAA------------------------
droEug1 scf7180000409724:1793-1953 - ------------------------------------------------------------------------------------------GAGATCTCAGCGTTCAT------------ACGGACAGACTGACAGACATGGCTCAATCGACATCGCTATTGATCCTGATCAAGAATAT---ACGAGTAT--ACT------------------------------GTTACAATAC------T----TTTCAACGAATTTAAT--------------ATACCCTTTTA-C--T----CTACGAGTAAC------GGG-------------------------------------------TATAAAACGAA------------AAATAAAAC
droBia1 scf7180000302468:34417-34561 - ------------------------------------------------------------------------------------------GAGATCTCAGCGTTCAT------------A----CGGACAGACGGACATGCCTAGATCGACTCGTCTTGTGACGCTGATCAAGAGTAT---A----TAT--ACTTTATGGGGTCGGAAACGTCTCCTTCACTGCGTT-----------------------------------------------------------------------------CACTGCAAAG--------GTA-----AAAAGCAT----------------------CAAAGA------------------TATAAT
droTak1 scf7180000415755:44580-44724 - ------------------------------------------------------------------------------------------GGGAACTCTGCGTTCAT------------ATGGACAGACAGATGGACATGGCTATATCGACTCGGCTAGTGATCCTGATTAAGAATAT---A----TAT--ACTTTATACTTTTGC--------------------------------------------ACGAATAGAAT--------------ATACCCTTTTA-C--T----CTACGATTAAA------GGA-------------------------------------------TATAACAA------------------TAG--A
droEle1 scf7180000491278:1934390-1934539 - ------------------------------------------------------------------------------------------GAGTTCTCGACGTTCAT------------ACGGACGAACAAACAAACATGGCTAGATCGACACGGCTTTTGATCCTGATCAAGAATAT---A----TAT--ACTTTATAGGGTTAC---------TTTGTGTGTGC----------CGACTGCGGTTTG--------------------------ATACTGTTTT----------------------------------------A-----A---------------------ACTCTTATAAAAA------------------CAAATT
droRho1 scf7180000771496:14599-14741 - ------------------------------------------------------------------------------------------CG-------ACAG----------------ACGGACGGACAGACGGACATGGCTAGATCGACTCTCCTGGTGATGCTGATCAAGAATAT---A----TAT--ACTTTATAGGGTCGGAAATGTCTCCTTCACTGCGTTG-CAAAC------T----TTTGA------------------------------------------------------------------------------------------------------------CATAAAATGAAA------ATAAAATGAAAAAT
droFic1 scf7180000453158:69326-69432 - ------------------------------------------------------------------------------------------AAGATTTCGATGTTCAT------------A----CGGACAGACAGACAGACATTGACCGACCCGTCTGATGATACTGATCGATTGTAT---G----TATTATCTTTATGGAGTCGCATTT-------------------------------------------------------------------------------------------------------------------------------------------------------AGAGA------------------CAGG-A
droKik1 scf7180000302471:157536-157677 - ------------------------------------------------------------------------------------------ACGA-------------------------ACGGACGGAAAGACGGACATGGCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATAT---A----TAT--ACTTTATAGGGTCGGAAAT-----------------------------------------------TATA--------------ATACC--------------------------CTGCAAGG--------GTATAATAAATAGTATTAA-----------TAAATAAATACAAA------------------TAAAGT
droAna3 scaffold_13230:3168858-3168997 - ------------------------------------------------------------------------------------------GAGATCTACGCGTTCAT------------A----CAGACAGACGGACATGGCTATATTGACTCGGCTGTTAATGCTGATCAAAAATTC---A--------------------------------------CTGCGTTG-CACAC------T----TTTGAGAAAAATTATA--------------ATACCCTCT------------------------GCATGA--------AT-----------------------------------ATAAAATGAG---------T--AAAAAGTAA
droBip1 scf7180000392505:635-775 - ------------------------------------------------------------------------------------------GA--------CGG----------------ACAGACGGACAGACGGACATGCTCATATCAACTCAGGAGGTGATCCTGATCAAGAATAT---A----TAT--ACTTTAAAAAAAAAA---TA------------------CA---------------------------AAA--------------AAAAA-------T--T----CCAAAAAAA----------------------AACAAAAAATACCAA-----------AA-A-----AATACCAA------------AAAAAATAC
dp5 Unknown_singleton_3119:156-337 - ------------------------------------------------------------------------------------------GAGCACTAGGCGCTGAAGCGGACGGACAGACGGACGGACAGACAGACAGGGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATAT---A----TAT--ACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTA-CACACATCGACT----TTTA--------------------------------------C--C----ACA---------------------AATCT-A-----A---TATCTA-----------AA-A--TATAATA----------------ATATAATAT
droPer2 scaffold_550:10131-10299 - ------------------------------------------------------------------------------------------GAGATCTAGGCACTCAT------------GGGGACGGACAGACGGACGGGGCTCTATCGACTCGGCTATTGATGCTGATCAAGAATAT---A----TAG--ACTTTATGGGGTCGGAAACGCTTTCTGCTGGACGTT--------------------CA--------CCAC--------------AAACCTCTATC-CCCATT---------------TCAAGT--------GTAA-----A---------------------ATTTACACAAAAA------------------TCTAAG
droWil2 scf2_1100000004968:2269095-2269248 - ------------------------------------------------------------------------------------------GAGATCGAGGCGCTCAT------------A----CGGACAGACGGACATGGCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATAT---A----TAT--TCTTTATAGGGTCGGAAAAGCTTCCTTCTTCCTGTTA-CATAC---------------------------------------------CATTTCA-C--C----CTATGGGTGTA------TGG-------------------------------------------TATAAAAA------------------TAAAA-
droVir3 scaffold_13050:2904024-2904196 - ------------------------------------------------------------------------------------------GAGATCCTTGCGTTCATA--------CATACGGATGGATGGACGGACATGGATAGATCGACTCGGCTATTGGTGCTGATCAAGAATAT---A----TAT--ACTTTATGGGGTCGGAGATG------------------CA--------------------CAAATACAAT--------------ATACCCTTATA-CCTATTTTTAATGGGTTCA------GGG-------------------------------------------TATAAAAAGGGA------CTT--AAATAGCAT
droMoj3 scaffold_6498:1269789-1269962 - ------------------------------------------------------------------------------------------GAGATCGCCGCGTTCATA--------CATACGGACAGACGGACGGACAGGGCCAATTCGACTCAGCTCGTCGCCCTGATCAAGAATAT---A----TAT--ACTTTGTGCTT----------------C-GCCTGTTG-CATAC------A----TTTCAACAAAACCAAT--------------TTATCCTGATTTCCCATTTTCAATGGGTTCA------GGG-------------------------------------------TACAAAAA------------------TAAATT
droGri2 scaffold_14906:8359753-8359915 - ------------------------------------------------------------------------------------------AG-----CTCTGTTCAA------------A----TAGACAGACGGACATGGCTGGATCGACTCTGTTTTTGATCTTCATCAGGAATATACTA----TAT--ACTTTATGGGATAGGAAATGTCTCTTTCTA--------CACA---------------------------------------------------------------AATGGGTTTA------GGGTAAAAATGT------------A---TTCCCAGCTATAAAAATAAATCAAAA------------------TAAATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGTGGCAACATGGGTCTACAAATTGCGCTGCACCAATGTCTCTGGAATCTGTATGCTGAATCTCAACCTTCTGTTGCTGTTATAGTTCCTGAGATCTCGACGTTCAA------------A----CGGACAGACGGACATGTCCAGATCGGCTCGGCCATTGATCCTGATCAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................TGTTATAGTTCCTGAGATCTCGACGTT..............................................................................................................................................................................................................................................................................................27134.0034000000484180000000
............................................................................................................................CGGACAGACGGACATGTCCAGATCGGC...............................................................................................................................................................................................................................................27128.0028000000323010010000
.........................................................................................TGAGATCTCGACGTTCAA------------A----CGGACA....................................................................................................................................................................................................................................................................25326.007800510013351590000000
..................................................GTATGCTGAATCTCAACCTTCTGTT...........................................................................................................................................................................................................................................................................................................................25125.0025000200134150000000
.................................................................................ATAGTTCCTGAGATCTCGACGTT..............................................................................................................................................................................................................................................................................................232024.70494020000312180000000000
.................................................................................ATAGTTCCTGAGATCTCGACGTTCAA------------...............................................................................................................................................................................................................................................................................26214.002800110038580020000
.................................................................................ATAGTTCCTGAGATCTCGACGTTCAA------------A----..........................................................................................................................................................................................................................................................................27213.5027010000117331010000
.............................................................................TGTTATAGTTCCTGAGATCTCGACGT...............................................................................................................................................................................................................................................................................................26113.001300000005133010000
.........................................................................................TGAGATCTCGACGTTCAA------------A----CGGACAGA..................................................................................................................................................................................................................................................................27212.00240011001010101000000
..................................................GTATGCTGAATCTCAACCTTCTGTTGC.........................................................................................................................................................................................................................................................................................................................2719.00900010004040000000
..........................................................................TGCTGTTATAGTTCCTGAGATCTCGA..................................................................................................................................................................................................................................................................................................2619.00900000005130000000
..................................................GTATGCTGAATCTCAACCTTCTGT............................................................................................................................................................................................................................................................................................................................2418.00800140001110000000
................................................................................TATAGTTCCTGAGATCTCGACGTTCAA------------A----..........................................................................................................................................................................................................................................................................2827.501500000026250000000
.............................................................................TGTTATAGTTCCTGAGATCTCGACG................................................................................................................................................................................................................................................................................................2517.00700010001140000000
..........................................................................TGCTGTTATAGTTCCTGAGATCTCGACG................................................................................................................................................................................................................................................................................................2816.00600000002040000000
..................................................GTATGCTGAATCTCAACCTTCTGTTG..........................................................................................................................................................................................................................................................................................................................2614.00400010000030000000
.........................................................................................TGAGATCTCGACGTTCAA------------A----CGGAC.....................................................................................................................................................................................................................................................................2433.331000100033200010000
................................................................................................................................................GATCGGCTCGGCCATTGATCCTGA..............................................................................................................................................................................................................................2413.00300010002000000000
.................................................................................ATAGTTCCTGAGATCTCGACGT...............................................................................................................................................................................................................................................................................................22202.8557000000000057000000
.........................................................................................TGAGATCTCGACGTTCAA------------A----CGGA......................................................................................................................................................................................................................................................................2332.67800000004030010000
................................................................................TATAGTTCCTGAGATCTCGACGTTCAA------------...............................................................................................................................................................................................................................................................................2722.50500000001120010000
.................................................................................ATAGTTCCTGAGATCTCGACGTTCAA------------T----..........................................................................................................................................................................................................................................................................2722.00400200020000000000
............................................................................................................................CGGACAGACGGACATGTCCAGATCGGCTCGGA..........................................................................................................................................................................................................................................3212.00200000020000000000
......................................................................................TCCTGAGATCTCGACGTTCAA------------A----CGG.......................................................................................................................................................................................................................................................................2522.00400002000000020000
..........................................................................................................................................TGTCCAGATCGGCTCGGCCATTGA....................................................................................................................................................................................................................................2412.00200000000000020000
.......................................................................TGTTGCTGTTATAGTTCCTGAGATCT.....................................................................................................................................................................................................................................................................................................2612.00200000000020000000
.............................................................................TGTTATAGTTCCTGAGATCTCGA..................................................................................................................................................................................................................................................................................................2312.00200000001010000000
.................................................................................ATAGTTCCTGAGATCTCGACGTTCAA------------A----A.........................................................................................................................................................................................................................................................................2822.00400000001210000000
.............................................................................TGTTATAGTTCCTGAGATCTCGAC.................................................................................................................................................................................................................................................................................................2412.00200100001000000000
.........................................................................................TGAGATCTCGACGTTCAA------------A----CGGACAG...................................................................................................................................................................................................................................................................2622.00400000003000010000
..................................................GTATGCTGAATCTCAACCTTCTGTTGCT........................................................................................................................................................................................................................................................................................................................2812.00200010001000000000
...........................................................................GCTGTTATAGTTCCTGAGATCTCGACG................................................................................................................................................................................................................................................................................................2712.00200000002000000000
......................................................................................................TTCAA------------A----CGGACAGACGGACATGTC........................................................................................................................................................................................................................................................2412.00200200000000000000
....................................TGTCTCTGGAATCTGTATGCTGAATC........................................................................................................................................................................................................................................................................................................................................2652.001000000080200000000
..................................AATGTCTCTGGAATCTGTATGCTGA...........................................................................................................................................................................................................................................................................................................................................2512.00200000001100000000
......................................................................................TCCTGAGATCTCGACGTTCAA------------A----CGGAC.....................................................................................................................................................................................................................................................................2721.50300100000000020000
...............................................................................TTATAGTTCCTGAGATCTCGACGTTCA............................................................................................................................................................................................................................................................................................27201.3527002400000300000000
...................................................................................AGTTCCTGAGATCTCGACGTTCAA------------A----..........................................................................................................................................................................................................................................................................2531.33400000002020000000
..................................................................................TAGTTCCTGAGATCTCGACGTTCAA------------A----..........................................................................................................................................................................................................................................................................2631.33400000012100000000
......................................................................................TCCTGAGATCTCGACGTTCAA------------A----CGGA......................................................................................................................................................................................................................................................................2621.00200000000200000000
..TGGCAACATGGGTCTACAAATTGCGC..........................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
.....................................................TGCTGAATCTCAACCTTCTGTTGCT........................................................................................................................................................................................................................................................................................................................2511.00100000000010000000
...................................................TATGCTGAATCTCAACCTTCTGTTG..........................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
..........................................................................TGCTGTTATAGTTCCTGAGATCTCG...................................................................................................................................................................................................................................................................................................2511.00100000000100000000
..................................................GTATGCTGAATCTCAACCTTCTG.............................................................................................................................................................................................................................................................................................................................2331.00300000000210000000
...................................ATGTCTCTGGAATCTGTATGCTGAA..........................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
.................................................TGTATGCTGAATCTCAACCTTCTGT............................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
............................................................................................................................CGGACAGACGGACATGTCCAGATCGGCTC.............................................................................................................................................................................................................................................2911.00100000000010000000
...........................................................................GCTGTTATAGTTCCTGAGATCTCGACGT...............................................................................................................................................................................................................................................................................................2811.00100000001000000000
...................................................TATGCTGAATCTCAACCTTCTGTTGC.........................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
....................................................................................................................................CGGACATGTCCAGATCGGCTC.............................................................................................................................................................................................................................................2111.00100000000010000000
.................................................................................................................................AGACGGACATGTCCAGATCGGCTC.............................................................................................................................................................................................................................................2411.00100010000000000000
...........................................................................GCTGTTATAGTTCCTGAGATCTCGAC.................................................................................................................................................................................................................................................................................................2611.00100000001000000000
............................................................................................................................................TCCAGATCGGCTCGGCCATTGATC..................................................................................................................................................................................................................................2411.00100000000001000000
........................................................................................................CAA------------A----CGGACAGACGGACATGTCCAGA....................................................................................................................................................................................................................................................2611.00100000000010000000
....................................................................................................................................CGGACATGTCCAGATCGGCTCGGCC.........................................................................................................................................................................................................................................2511.00100000001000000000
.................................................................................................CGACGTTCAA------------A----CGGACAGACGGACA............................................................................................................................................................................................................................................................2531.00300000001010010000
.............................................................................TGTTATAGTTCCTGAGATC......................................................................................................................................................................................................................................................................................................1911.00100000000001000000
CGTGGCAACATGGGTCTACAAATTGC............................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
......................................................................................................TTCAA------------A----CGGACAGACGGACATGTCCAT.....................................................................................................................................................................................................................................................2711.00100000000001000000
...................................................................................AGTTCCTGAGATCTCGACGTTCAA------------A----C.........................................................................................................................................................................................................................................................................2631.00300000020100000000
.GTGGCAACATGGGTCTACAAATTGCGC..........................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
..........................................................................TGCTGTTATAGTTCCTGAGATC......................................................................................................................................................................................................................................................................................................2211.00100000010000000000
..........................................................................TGCTGTTATAGTTCCTGAGATCT.....................................................................................................................................................................................................................................................................................................2311.00100000000010000000
...................................................................................................................................................CGGCTCGGCCATTGATCCTGATCA...........................................................................................................................................................................................................................2411.00100000000001000000
..............TCTACAAATTGCGCTGCACCAATGTCTC............................................................................................................................................................................................................................................................................................................................................................2811.00100000000100000000
..........................................................................TGCTGTTATAGTTCCTGAGATCTCGAC.................................................................................................................................................................................................................................................................................................2711.00100000000010000000
....................................TGTCTCTGGAATCTGTATGCTGAA..........................................................................................................................................................................................................................................................................................................................................2450.80400000020200000000
.................................................................................................CGACGTTCAA------------A----CGGACAGACGGACATG..........................................................................................................................................................................................................................................................2720.50100000000000010000
................................................................................TATAGTTCCTGAGATCTCGACGTTCAA------------A----A.........................................................................................................................................................................................................................................................................2920.50100000001000000000
......................................................................................TCCTGAGATCTCGACGTTCAA------------A----CGGACA....................................................................................................................................................................................................................................................................2820.50100000000000010000
......................................TCTCTGGAATCTGTATGCTGAATCTC......................................................................................................................................................................................................................................................................................................................................2640.50200000011000000000
.................................................................................ATAGTTCCTGAGATCTCGACGTTCAA------------T----A.........................................................................................................................................................................................................................................................................2820.50100000000100000000
.....................................................................................TTCCTGAGATCTCGACGTTCAA------------A----CGGAC.....................................................................................................................................................................................................................................................................2820.50100000000000010000
..................................................................................TAGTTCCTGAGATCTCGACGTTCA............................................................................................................................................................................................................................................................................................24200.501000900000000010000
..........................................................................................GAGATCTCGACGTTCAA------------A----CGGACAG...................................................................................................................................................................................................................................................................2520.50100000001000000000
......................................................................................TCCTGAGATCTCGACGTTCAA------------A----CGGACAGA..................................................................................................................................................................................................................................................................3020.50100000001000000000
.........................................................................................TGAGATCTCGACGTTCAA------------A----CGGACAGT..................................................................................................................................................................................................................................................................2750.40200000002000000000
....................................TGTCTCTGGAATCTGTATGCTGAAT.........................................................................................................................................................................................................................................................................................................................................2550.40200000000200000000
....................................TGTCTCTGGAATCTGTATGCTGA...........................................................................................................................................................................................................................................................................................................................................2350.40200000000200000000
..................................................................................................GACGTTCAA------------A----CGGACAGACGGACA............................................................................................................................................................................................................................................................2430.33100000000000010000
......................................................................................TCCTGAGATCTCGACGTTCAA------------A----..........................................................................................................................................................................................................................................................................2230.33100000000000010000
........................................TCTGGAATCTGTATGCTGAATCTCAACC..................................................................................................................................................................................................................................................................................................................................2830.33100000000001000000
......................................................................................TCCTGAGATCTCGACGTTCAA------------...............................................................................................................................................................................................................................................................................2130.33100000000000001000
.................................................................................................CGACGTTCAA------------A----CGGACAGACGGA..............................................................................................................................................................................................................................................................2330.33100000001000000000
.........................................................................................TGAGATCTCGACGTTCAA------------A----CGGACAT...................................................................................................................................................................................................................................................................26120.33400000011000020000
.......................................CTCTGGAATCTGTATGCTGAATCTCAAC...................................................................................................................................................................................................................................................................................................................................2830.33100000000010000000
...................................ATGTCTCTGGAATCTGTATGCT.............................................................................................................................................................................................................................................................................................................................................2230.33100000010000000000
..........................................TGGAATCTGTATGCTGAATCTCAACC..................................................................................................................................................................................................................................................................................................................................2660.33200000000001010000
..................................................................................TAGTTCCTGAGATCTCGACGTTCAA------------...............................................................................................................................................................................................................................................................................2530.33100000000010000000
..........................................TGGAATCTGTATGCTGAATCTCAAC...................................................................................................................................................................................................................................................................................................................................2560.33200000000010010000
...............................................TCTGTATGCTGAATCTCAACCTT................................................................................................................................................................................................................................................................................................................................23200.30600000006000000000
......................................................................................................TTCAA------------A----CGGACAGACGGACATG..........................................................................................................................................................................................................................................................2270.29200000010000001000
..........................................TGGAATCTGTATGCTGAA..........................................................................................................................................................................................................................................................................................................................................1880.25200000000002000000
....................................TGTCTCTGGAATCTGTATGCTGAATCTC......................................................................................................................................................................................................................................................................................................................................2840.25100000010000000000
...................................................................................................ACGTTCAA------------A----CGGACA....................................................................................................................................................................................................................................................................1550.20100000000001000000
....................................TGTCTCTGGAATCTGTATGCTG............................................................................................................................................................................................................................................................................................................................................2250.20100000010000000000
...............................................................................................................................ACAGACGGACATGTCCAGATC..................................................................................................................................................................................................................................................2160.17100000000001000000
..............................................................................................................................GACAGACGGACATGTCCAGATC..................................................................................................................................................................................................................................................2260.17100000000001000000
..............................................................................................................................GACAGACGGACATGTCCAGAT...................................................................................................................................................................................................................................................2160.17100000000001000000
..........................................TGGAATCTGTATGCTGAATCTCAA....................................................................................................................................................................................................................................................................................................................................2460.17100000000000010000
................................................................................TATAGTTCCTGAGATCTCGACGTTCA............................................................................................................................................................................................................................................................................................26200.15300000000003000000
.................................................................................ATAGTTCCTGAGATCTCGACGTTCAA------------A----AA........................................................................................................................................................................................................................................................................2980.13100000000100000000
.........................................................................................TGAGATCTCGACGTTCAA------------A----CGGACAGACA................................................................................................................................................................................................................................................................2990.11100000010000000000
....................................TGTCTCTGGAATCTGTATGCT.............................................................................................................................................................................................................................................................................................................................................21100.10100000010000000000
................................................................................TATAGTTCCTGAGATCTCGACGTTC.............................................................................................................................................................................................................................................................................................25200.10200000000200000000
.......................................................................................................TCAA------------A----CGGACAGACGG...............................................................................................................................................................................................................................................................16100.10100000000001000000
...............................................TCTGTATGCTGAATCTCAACCTTC...............................................................................................................................................................................................................................................................................................................................24200.10200000002000000000
..............................................ATCTGTATGCTGAATCTCAACCTTC...............................................................................................................................................................................................................................................................................................................................25200.10200000002000000000
..................................................GTATGCTGAATCTCAACCTTCT..............................................................................................................................................................................................................................................................................................................................22200.10200000002000000000
...............................................................................TTATAGTTCCTGAGATCTCGACGTTC.............................................................................................................................................................................................................................................................................................26200.10200000000000002000
.........................................................................................TGAGATCTCGACGTTCAA------------A----CGGACTT...................................................................................................................................................................................................................................................................26160.06100000000100000000
..TGGCAACATGGGTCT.....................................................................................................................................................................................................................................................................................................................................................................................15170.06100000000001000000
.................................................................................ATAGTTCCTGAGATCTCG...................................................................................................................................................................................................................................................................................................18200.05100000000010000000
.............................................AATCTGTATGCTGAATCTCAACCTT................................................................................................................................................................................................................................................................................................................................25200.05100000010000000000
.........................................................................................TGAGATCTCGACGTTCA............................................................................................................................................................................................................................................................................................17200.05100000000001000000
.................................................................................ATAGTTCCTGAGATCTCGACGTTCA............................................................................................................................................................................................................................................................................................25200.05100000000000001000
.........................................................................................TGAGATCTCGACGTTCAA------------A----CGGTTT....................................................................................................................................................................................................................................................................25200.05100000000000001000
..............................................ATCTGTATGCTGAATCTCAACCT.................................................................................................................................................................................................................................................................................................................................23200.05100000000010000000
.....................................................................................TTCCTGAGATCTCGACGTTCA............................................................................................................................................................................................................................................................................................21200.05100000000000010000
................................................................................TATAGTTCCTGAGATC......................................................................................................................................................................................................................................................................................................16200.05100000000001000000
..................................................GTATGCTGAATCTCAACCTTC...............................................................................................................................................................................................................................................................................................................................21200.05100000000100000000
.................................................................................ATAGTTCCTGAGATCTCGAC.................................................................................................................................................................................................................................................................................................20200.05100000000010000000
droSec2
------------------------------------------------------------------------------------------GAGATCTCGACGTTCAA------------A----CGGACAGACGGACATGTCCAGATCGGCTCGGCCATTGATCCTGATCAAGAACGC---A----TAT--ACTTTATATGGTCGGTTTT------------------------------------------------------------------------------------------------------------------------------------------------------CGAAAAAAAATTCACAGTT--ATCCCACTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................TCGGCTCGGCCATTGATCCTGA..............................................................................................................................................................................................................................2211.0010010
dm3
------------------------------------------------------------------------------------------CAACCTTAGTGGGT---------------AGTGACCGAGAGATGGTCACGTGT--CTCAAGTCGGCC------------CCAAAATAG---C----CATCTCCCCATTTATGCCGCAATT-----------------------------------------------CATATCAGAACAACAACAACAAT--TT-----------GGATCAAGC--CACGAAGG--------GCTTAATAAAAAGTTCCACCGCGATCTTTGAACTTTTCCCATGG------------------TCG--ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................T--CTCAAGTCGGCC------------CCAAAATAG---C----CA..........................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................T--CTCAAGTCGGCC------------CCAAAATAG---C----CATC........................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................AACAAT--TT-----------GGATCAAGC--CACGAAGG--------GCT.................................................................2822.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................CAAT--TT-----------GGATCAAGC--CACGAAGG--------GC..................................................................2522.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................T--TT-----------GGATCAAGC--CACGAAGG--------G...................................................................2121.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................ATGGTCACGTGT--CTCAAGTCG............................................................................................................................................................................................................................................2121.5030000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TT-----------GGATCAAGC--CACGAAGG--------GCTTA...............................................................2421.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TGGGT---------------AGTGACCGAGAGATGG...............................................................................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000
.............................................................................................................................CGAGAGATGGTCACGTGT--CTC..................................................................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................TGT--CTCAAGTCGGCC------------CCAAAATAG---C----CA..........................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................CAAAATAG---C----CATCTCCCCATTT...............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TT-----------GGATCAAGC--CACGAAGG--------GC..................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................G---C----CATCTCCCCATTTATGCCG.........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................CTTTGAACTTTTCCCATGG------------------TC....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................ACCGCGATCTTTGAACTTTTCCC............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TAGTGGGT---------------AGTGACCGAGAGATGG...............................................................................................................................................................................................................................................................2421.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................AATAG---C----CATCTCCCCATTTATGCCG.........................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................C----CATCTCCCCATTTATGCCGC........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................ATCAAGC--CACGAAGG--------GCTTAA..............................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................GTCACGTGT--CTCAAGTCGGC..........................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................T-----------------------------------------------CATATCAGAACAACAACAACAAT--T...........................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................GTGGGT---------------AGTGACCGAGAGATG................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................GAGAGATGGTCACGTGT--CTCA.................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................................GT---------------AGTGACCGAGAGATGGTC.............................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................AGAACAACAACAACAAT--TT-----------GGA............................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................GGGT---------------AGTGACCGAGAGATGGT..............................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................T--TT-----------GGATCAAGC--CACGAAGG--------GCT.................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................CAACCTTAGTGGGT---------------AGTGACC........................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................ACAAT--TT-----------GGATCAAGC--CACGAAGG--------....................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................GATGGTCACGTGT--CTCAAGTCGGCC------------CC...........................................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TAGTGGGT---------------AGTGACCGAGAGATGGT..............................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TAGTGGGT---------------AGTGACCGAGAGATGGTC.............................................................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................CGAAGG--------GCTTAATAAAAAGTT.....................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................T--TT-----------GGATCAAGC--CACGAAGG--------GCTTAAT.............................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................AGATGGTCACGTGT--CTCAAGT..............................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................................................TTAGTGGGT---------------AGTGACCGAGAGATGGT..............................................................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................................................................................CTTAGTGGGT---------------AGTGACCGAGAGATGGT..............................................................................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TCAGAACAACAACAACAAT--TT-----------GGAT...........................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................GAGAGATGGTCACGTGT--CTCAAGT..............................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................ATAAAAAGTTCCACCGCGATC..........................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................AATAAAAAGTTCCACCGCGAT...........................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................AGATGGTCACGTGT--CTCAAGTCGGC..........................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................T--TT-----------GGATCAAGC--CACGAAGG--------GCTTAAA.............................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................AT--TT-----------GGATCAAGC--CACGAAGG--------....................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...................................................................................................TGGGT---------------AGTGACCGAGAGATGGT..............................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................CACGTGT--CTCAAGTCGGCC------------CC...........................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................TGT--CTCAAGTCGGCC------------CCAAAA.......................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................C--CACGAAGG--------GCTTAATAAAAAGTT.....................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................TGT--CTCAAGTCGGCC------------CCAAA........................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
...........................................................................................AACCTTAGTGGGT---------------AGTGACC........................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TT-----------GGATCAAGC--CACGAAGG--------G...................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................CACGAAGG--------GCTTAATAAAAAG.......................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................TGT--CTCAAGTCGGCC------------CCAAAATAG---C----............................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TT-----------GGATCAAGC--CACGAAGG--------....................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............................................................................................ACCTTAGTGGGT---------------AGTGACCGAGAGATG................................................................................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................CCTTAGTGGGT---------------AGTGACCGAGA....................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................T-----------GGATCAAGC--CACGAAGG--------GCT.................................................................2120.5010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................ACCTTAGTGGGT---------------AGTGACCGA......................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................TAATAAAAAGTTCCACCGCGAT...........................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................GTGGGT---------------AGTGACCGAGAGAT.................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................................................TTAGTGGGT---------------AGTGACCGAGAG...................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................GAACAACAACAACAAT--TT-----------GGATCAAGC--....................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TTAGTGGGT---------------AGTGACCGAGAGATGGTCA............................................................................................................................................................................................................................................................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................TCACGTGT--CTCAAGTCGGCC------------CCAAAA.......................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................CACGTGT--CTCAAGTCGGCC------------.............................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................CAACAAT--TT-----------GGATCAAGC--CAC.................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................ACAAT--TT-----------GGATCAAGC--CACGAA..............................................................................2240.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................AACAAT--TT-----------GGATCAAGC--CACG................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................CAAT--TT-----------GGATCAAGC--CACGA...............................................................................2040.2510000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
------------------------------------------------------------------------------------------CAGATCGAGCCGTTCAT------------A----CGGACAGACGGTCATAGCCAGATCGACTCGGGTATTGATCCTGATCAAGAATAT---A----TAT--AATTTATATGGTCGAAAACGTTTCCTTCTGCCTGTTA-CACAC------T----TCTCAGAAATTCTAGT--------------ATATT-------C--T----CTAAAAGTAAA------TGG-------------------------------------------TAAAA-----------------------AAACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................GATCGACTCGGGTATTGATCCTGAT.............................................................................................................................................................................................................................2534.671400000014
droYak3
------------------------------------------------------------------------------------------GAGATCTCGACGTTCAT------------ACGAACGGACAGACGGACATGGCCAGATCGACTCGGCTATTGATCCTGATCAAGAATAT---A----TAT--ACTTTATATGGTC-----------CTTCTGCCTGTTA-CATAC------T----TTTCAACGAATCTATT--------------ATATCCTTTTA-T--T----CTACGAGTAAC------GGG-------------------------------------------TATAAAAA------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................ATCCTGATCAAGAATAT---A----TAT--.......................................................................................................................................................................................................21200.10202000000000
.........................................................................................................................................................................................................GTC-----------CTTCTGCCTGTTA-CATAC------T----TTT..............................................................................................................................................25110.09100100000000
.........................................................................................................................................................................................................GTC-----------CTTCTGCCTGTTA-CATAC------T----.................................................................................................................................................22130.08101000000000
..............................................................................................................................................................................................................................CTGTTA-CATAC------T----TTTCAAC..........................................................................................................................................19200.05101000000000
.......................................................................................................TCAT------------ACGAACGGACAGACGGAC.............................................................................................................................................................................................................................................................22200.05101000000000
...............................................................................................................................................................................................................................TGTTA-CATAC------T----TTTCAACGAATCTAT..................................................................................................................................26200.05101000000000
..........................................................................................................................AACGGACAGACGGACATGGCCA......................................................................................................................................................................................................................................................22200.05100000010000
droEug1
------------------------------------------------------------------------------------------GAGATCTCAGCGTTCAT------------ACGGACAGACTGACAGACATGGCTCAATCGACATCGCTATTGATCCTGATCAAGAATAT---ACGAGTAT--ACT------------------------------GTTACAATAC------T----TTTCAACGAATTTAAT--------------ATACCCTTTTA-C--T----CTACGAGTAAC------GGG-------------------------------------------TATAAAACGAA------------AAATAAAACSizeHit CountTotal NormTotal
No Reads
droBia1
------------------------------------------------------------------------------------------GAGATCTCAGCGTTCAT------------A----CGGACAGACGGACATGCCTAGATCGACTCGTCTTGTGACGCTGATCAAGAGTAT---A----TAT--ACTTTATGGGGTCGGAAACGTCTCCTTCACTGCGTT-----------------------------------------------------------------------------CACTGCAAAG--------GTA-----AAAAGCAT----------------------CAAAGA------------------TATAATSizeHit CountTotal NormTotal
No Reads
droTak1
------------------------------------------------------------------------------------------GGGAACTCTGCGTTCAT------------ATGGACAGACAGATGGACATGGCTATATCGACTCGGCTAGTGATCCTGATTAAGAATAT---A----TAT--ACTTTATACTTTTGC--------------------------------------------ACGAATAGAAT--------------ATACCCTTTTA-C--T----CTACGATTAAA------GGA-------------------------------------------TATAACAA------------------TAG--ASizeHit CountTotal NormTotal
No Reads
droEle1
------------------------------------------------------------------------------------------GAGTTCTCGACGTTCAT------------ACGGACGAACAAACAAACATGGCTAGATCGACACGGCTTTTGATCCTGATCAAGAATAT---A----TAT--ACTTTATAGGGTTAC---------TTTGTGTGTGC----------CGACTGCGGTTTG--------------------------ATACTGTTTT----------------------------------------A-----A---------------------ACTCTTATAAAAA------------------CAAATTSizeHit CountTotal NormTotal
No Reads
droRho1
------------------------------------------------------------------------------------------CG-------ACAG----------------ACGGACGGACAGACGGACATGGCTAGATCGACTCTCCTGGTGATGCTGATCAAGAATAT---A----TAT--ACTTTATAGGGTCGGAAATGTCTCCTTCACTGCGTTG-CAAAC------T----TTTGA------------------------------------------------------------------------------------------------------------CATAAAATGAAA------ATAAAATGAAAAATSizeHit CountTotal NormTotal
No Reads
droFic1
------------------------------------------------------------------------------------------AAGATTTCGATGTTCAT------------A----CGGACAGACAGACAGACATTGACCGACCCGTCTGATGATACTGATCGATTGTAT---G----TATTATCTTTATGGAGTCGCATTT-------------------------------------------------------------------------------------------------------------------------------------------------------AGAGA------------------CAGG-ASizeHit CountTotal NormTotal
No Reads
droKik1
------------------------------------------------------------------------------------------ACGA-------------------------ACGGACGGAAAGACGGACATGGCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATAT---A----TAT--ACTTTATAGGGTCGGAAAT-----------------------------------------------TATA--------------ATACC--------------------------CTGCAAGG--------GTATAATAAATAGTATTAA-----------TAAATAAATACAAA------------------TAAAGTSizeHit CountTotal NormTotal
No Reads
droAna3
------------------------------------------------------------------------------------------GAGATCTACGCGTTCAT------------A----CAGACAGACGGACATGGCTATATTGACTCGGCTGTTAATGCTGATCAAAAATTC---A--------------------------------------CTGCGTTG-CACAC------T----TTTGAGAAAAATTATA--------------ATACCCTCT------------------------GCATGA--------AT-----------------------------------ATAAAATGAG---------T--AAAAAGTAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
------------------------------------------------------------------------------------------GA--------CGG----------------ACAGACGGACAGACGGACATGCTCATATCAACTCAGGAGGTGATCCTGATCAAGAATAT---A----TAT--ACTTTAAAAAAAAAA---TA------------------CA---------------------------AAA--------------AAAAA-------T--T----CCAAAAAAA----------------------AACAAAAAATACCAA-----------AA-A-----AATACCAA------------AAAAAATACSizeHit CountTotal NormTotal
No Reads
dp5
------------------------------------------------------------------------------------------GAGCACTAGGCGCTGAAGCGGACGGACAGACGGACGGACAGACAGACAGGGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATAT---A----TAT--ACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTA-CACACATCGACT----TTTA--------------------------------------C--C----ACA---------------------AATCT-A-----A---TATCTA-----------AA-A--TATAATA----------------ATATAATATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................TGAAGCGGACGGACAGACGGACGGA......................................................................................................................................................................................................................................................................2531.0030000000300
........................................................................................................................................................................TCAAGAATAT---A----TAT--ACTTTATGGGGT...........................................................................................................................................................................................26200.701401400000000
......................................................................................................................................................................GATCAAGAATAT---A----TAT--ACTTTATGGG.............................................................................................................................................................................................26200.3570000000700
.......................................................................................................TGAAGCGGACGGACAGACGGACGGAC.....................................................................................................................................................................................................................................................................2630.3310000000100
......................................................................................................................GACGGACGGACAGACAGACAGG..........................................................................................................................................................................................................................................................22200.3060000000060
.................................................................................................AGGCGCTGAAGCGGACGGAC.................................................................................................................................................................................................................................................................................2040.2510100000000
.......................................................................................................................................ACAGGGCTCAATCGACTCGGC..........................................................................................................................................................................................................................................21200.2040000000040
................................................................................................................CGGACAGACGGACGGACAGAC.................................................................................................................................................................................................................................................................21200.2040000000400
............................................................................................................................................................................................................GGAAACGATTCCTTCTGGACGTT...................................................................................................................................................................23200.2040400000000
..................................................................................................................................................TCGACTCGGCTATTGATGCTGA..............................................................................................................................................................................................................................22200.2040400000000
.........................................................................................................................................................GGCTATTGATGCTGATCAAGAATA.....................................................................................................................................................................................................................24200.1530000000300
....................................................................................................................................CAGACAGGGCTCAATCGACTCGGCT.........................................................................................................................................................................................................................................25200.1530000000300
..................................................................................................................................................................TGCTGATCAAGAATAT---A----TAT--.......................................................................................................................................................................................................20200.1530000000030
..................................................................................................................................................................................................TTATGGGGTCGGAAACGATTC...............................................................................................................................................................................21200.1530000030000
......................................................................................................................................................................GATCAAGAATAT---A----TAT--ACTTTATGGGG............................................................................................................................................................................................27200.1020000000200
.......................................................................................................................ACGGACGGACAGACAGACAGGGCT.......................................................................................................................................................................................................................................................24200.1020000000020
............................................................................................................................................................................................................GGAAACGATTCCTTCTGGACGTTA-.................................................................................................................................................................24200.1020200000000
.............................................................................................................................................................................................................GAAACGATTCCTTCTGGACG.....................................................................................................................................................................20200.1020000002000
..............................................................................................................GACGGACAGACGGACGGACAGA..................................................................................................................................................................................................................................................................22200.1020000000200
.................................................................................................................................................................................................TTTATGGGGTCGGAAACG...................................................................................................................................................................................18200.1020000000200
...................................................................................................................ACAGACGGACGGACAGACAGACAGGGC........................................................................................................................................................................................................................................................27170.0610000000010
....................................................................................................................CAGACGGACGGACAGACAG...............................................................................................................................................................................................................................................................19200.0510000000010
...................................................................................................................ACAGACGGACGGACAGACAGACAG...........................................................................................................................................................................................................................................................24200.0510100000000
.......................................................................................................................ACGGACGGACAGACAGACAGGGCTCAAT...................................................................................................................................................................................................................................................28200.0510000000010
...................................................................................................................................ACAGACAGGGCTCAATCGAC...............................................................................................................................................................................................................................................20200.0510100000000
.......................................................................................................................ACGGACGGACAGACAGACAGGGC........................................................................................................................................................................................................................................................23200.0510000000010
.................................................................................................................................................................ATGCTGATCAAGAATAT---A----TA..........................................................................................................................................................................................................20200.0510000000010
......................................................................................................................GACGGACGGACAGACAGACAGGGCT.......................................................................................................................................................................................................................................................25200.0510000001000
.....................................................................................................................................................................................A----TAT--ACTTTATGGGGTCGGAAACGAT.................................................................................................................................................................................26200.0510000001000
........................................................................................................................................CAGGGCTCAATCGACTCGGCC.........................................................................................................................................................................................................................................21200.0510100000000
..............................................................................................................................GACAGACAGACAGGGCTCAAT...................................................................................................................................................................................................................................................21200.0510100000000
....................................................................................................................................CAGACAGGGCTCAATCGACTC.............................................................................................................................................................................................................................................21200.0510000000010
.........................................................................................................................GGACGGACAGACAGACAGG..........................................................................................................................................................................................................................................................19200.0510000000010
...............................................................................................................................................................TGATGCTGATCAAGAATAT---A----TAT--AC.....................................................................................................................................................................................................25200.0510000000010
.............................................................................................................................GGACAGACAGACAGGGCTCA.....................................................................................................................................................................................................................................................20200.0510000001000
droPer2
------------------------------------------------------------------------------------------GAGATCTAGGCACTCAT------------GGGGACGGACAGACGGACGGGGCTCTATCGACTCGGCTATTGATGCTGATCAAGAATAT---A----TAG--ACTTTATGGGGTCGGAAACGCTTTCTGCTGGACGTT--------------------CA--------CCAC--------------AAACCTCTATC-CCCATT---------------TCAAGT--------GTAA-----A---------------------ATTTACACAAAAA------------------TCTAAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................TGCTGATCAAGAATAT---A----TAG--ACTT...................................................................................................................................................................................................2430.331010000
..........................................................................................................T------------GGGGACGGACAGACGGACG............................................................................................................................................................................................................................................................20120.081010000
droWil2
------------------------------------------------------------------------------------------GAGATCGAGGCGCTCAT------------A----CGGACAGACGGACATGGCTAGATCGACTCGGCTGTTGATGCTGATCAAGAATAT---A----TAT--TCTTTATAGGGTCGGAAAAGCTTCCTTCTTCCTGTTA-CATAC---------------------------------------------CATTTCA-C--C----CTATGGGTGTA------TGG-------------------------------------------TATAAAAA------------------TAAAA-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................GACAGACGGACATGGCTAGATCGACT..............................................................................................................................................................................................................................................26200.35700070
.................................................................................................................................AGACGGACATGGCTAGATCGA................................................................................................................................................................................................................................................21200.25505000
..........................................................................................................T------------A----CGGACAGACGGACATGGCT.......................................................................................................................................................................................................................................................21200.05100001
..............................................................................................................................GACAGACGGACATGGCTAGATCGA................................................................................................................................................................................................................................................24200.05101000
droVir3
------------------------------------------------------------------------------------------GAGATCCTTGCGTTCATA--------CATACGGATGGATGGACGGACATGGATAGATCGACTCGGCTATTGGTGCTGATCAAGAATAT---A----TAT--ACTTTATGGGGTCGGAGATG------------------CA--------------------CAAATACAAT--------------ATACCCTTATA-CCTATTTTTAATGGGTTCA------GGG-------------------------------------------TATAAAAAGGGA------CTT--AAATAGCATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................TACGGATGGATGGACGGACATG..........................................................................................................................................................................................................................................................2211.001000000001000000000000000000000000000000000000000000000000000000
......................................................................................................TTCATA--------CATACGGATGGATGG...................................................................................................................................................................................................................................................................2120.501000000000000000000000000000000010000000000000000000000000000000
......................................................................................................TTCATA--------CATACGGATGGATGGAC.................................................................................................................................................................................................................................................................2320.501000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................TA--------CATACGGATGGATGGACG................................................................................................................................................................................................................................................................2020.501000000000000000000001000000000000000000000000000000000000000000
..........................................................................................................................................................................................TAT--ACTTTATGGGGTCGGAGATG------------------CA--------------------...........................................................................................................................................25130.152000000000000000000000000100000000000100000000000000000000000000
........................................................................................................................................CATGGATAGATCGACTCGGCTAT.......................................................................................................................................................................................................................................23160.132000002000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................T--ACTTTATGGGGTCGGAGATG------------------.................................................................................................................................................................21200.102000000000000000000000000000000020000000000000000000000000000000
............................................................................................................................................................................................T--ACTTTATGGGGTCGGAGATG------------------C................................................................................................................................................................22200.102000000000000000000000000000020000000000000000000000000000000000
......................................................................................................................................GACATGGATAGATCGACTCGG...........................................................................................................................................................................................................................................21160.061000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................CATGGATAGATCGACTCGGCTA........................................................................................................................................................................................................................................22160.061000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................TATTGGTGCTGATCAAGAAT......................................................................................................................................................................................................................20200.051000000000000000000000000000000100000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................TTTTTAATGGGTTCA------GGG-------------------------------------------T...............................19200.051000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................AGAATAT---A----TAT--ACTTTATGGGGTCGG........................................................................................................................................................................................26200.051000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................ATCGACTCGGCTATTGGTGCTGAT.............................................................................................................................................................................................................................24200.051000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................A----TAT--ACTTTATGGGGTCGGAGATG------------------C................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................CTATTTTTAATGGGTTCA------GGG-------------------------------------------................................21200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................GATCAAGAATAT---A----TAT--ACTTTATGGGG............................................................................................................................................................................................27200.051000000000000000000000000000000000010000000000000000000000000000
..............................................................................................TCCTTGCGTTCATA--------CATACG............................................................................................................................................................................................................................................................................20200.051000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................GACGGACATGGATAGATC..................................................................................................................................................................................................................................................18200.051100000000000000000000000000000000000000000000000000000000000000
.................................................................................................TTGCGTTCATA--------CATACGGATGGA......................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000001000000000000000000000000
.................................................................................................................................................................................T---A----TAT--ACTTTATGGGGTCGGAGAT....................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................ATCAAGAATAT---A----TAT--ACTTTATGGGG............................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
------------------------------------------------------------------------------------------GAGATCGCCGCGTTCATA--------CATACGGACAGACGGACGGACAGGGCCAATTCGACTCAGCTCGTCGCCCTGATCAAGAATAT---A----TAT--ACTTTGTGCTT----------------C-GCCTGTTG-CATAC------A----TTTCAACAAAACCAAT--------------TTATCCTGATTTCCCATTTTCAATGGGTTCA------GGG-------------------------------------------TACAAAAA------------------TAAATTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................TTCGACTCAGCTCGTCGCCCTG...............................................................................................................................................................................................................................2270.141100000
.............................................................................................................................................................................................................................................................................................TTCCCATTTTCAATGGGTTCA------GGG-------------------------------------------TAC.............................27110.091100000
.............................................................................................................................................................................................................................CCTGTTG-CATAC------A----TTTCAACAAAACC....................................................................................................................................26160.061100000
................................................................................................................................................................................................................................GTTG-CATAC------A----TTTCAACAAAACC....................................................................................................................................23170.061100000
.....................................................................................................................ATACGGACAGACGGACGGACA............................................................................................................................................................................................................................................................21200.051100000
............................................................................................................................CAGACGGACGGACAGGGCCAC.....................................................................................................................................................................................................................................................21200.051100000
..........................................................................................................................GACAGACGGACGGACAGGGCC.......................................................................................................................................................................................................................................................21200.051100000
.....................................................................................................................ATACGGACAGACGGACGGACAGGGC........................................................................................................................................................................................................................................................25200.051010000
......................................................................................................TTCATA--------CATACGGACAGACGGACGGA..............................................................................................................................................................................................................................................................26200.051100000
droGri2
------------------------------------------------------------------------------------------AG-----CTCTGTTCAA------------A----TAGACAGACGGACATGGCTGGATCGACTCTGTTTTTGATCTTCATCAGGAATATACTA----TAT--ACTTTATGGGATAGGAAATGTCTCTTTCTA--------CACA---------------------------------------------------------------AATGGGTTTA------GGGTAAAAATGT------------A---TTCCCAGCTATAAAAATAAATCAAAA------------------TAAATTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/15/2015 at 02:40 PM