ID:

dsi_27995

 Coordinate:

2r:5779017-5779083 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-9.7 -9.1 -9.1

Flybase annnotation

exon [2r_5778689_5779016_+]; CDS [2r_5778689_5779016_+]; CDS [2r_5779084_5779264_+]; exon [2r_5779084_5779264_+]; intron [2r_5779017_5779083_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------##################################################
TTGTGGCCTATGAGCGTCTGGGTCAATACATCGAAAATAATGATATCACTGTAAGTTGTTGATGGTGTAAAACCCACAACTCATATGGAAACTAACGATTGAGGTCGATTTTTGTAGGCCCGCAGCGCTGGAATCGCCACATTCGCCATCTGCGGCTTTGCCAATCC
**************************************************...((((((....(((.....))).))))))..((((((((....((((....)))).)))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR902008
ovaries
 SRR902009
testis
 M025
embryo
 O002
Head
 GSM343915
embryo
.....................................TAATGCTGTCACTGTAAGATGTT........................................................................................................... 23 3 1 5.00 5 4 0 1 0 0 0 0 0 0
.....................................................................ACAACCTCAACTCATATGGAAAC........................................................................... 23 3 3 4.67 14 0 2 0 2 5 5 0 0 0
.....................................TAATACTATCACTGTAAGATGTT........................................................................................................... 23 3 1 3.00 3 3 0 0 0 0 0 0 0 0
.....................................................................ACAACCTCAACTCATATGGAAACT.......................................................................... 24 3 1 2.00 2 0 2 0 0 0 0 0 0 0
...........................................................TGATGGTGTAAAACCCAC.......................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0
................TCTGGGTCAATACATCGAAAAT................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.................................AATATAATGATATCACTGTAAA................................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................TAATACTGTCACTGTAAGTTGTT........................................................................................................... 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................TAATAATGTCACTGTAAGATGTT........................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0
..GTGGCCTATGAGCGTCTGG.................................................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.....................................TAATACTATCACTGTAAGATGT............................................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................CAACTCATATGGAAA............................................................................ 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................GCTGGAATCGCCGCATT........................ 17 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.......................................................................AACCTCAACTCATATGGAAA............................................................................ 20 2 3 0.33 1 0 1 0 0 0 0 0 0 0
.........................................................................CCTCAACTCATATGGAA............................................................................. 17 1 4 0.25 1 0 1 0 0 0 0 0 0 0
.....................................................................AAAACCTCAACTCATATGGA.............................................................................. 20 2 4 0.25 1 0 1 0 0 0 0 0 0 0
.....................................................................AAAACCTCAACTCATATGGCAA............................................................................ 22 3 5 0.20 1 0 1 0 0 0 0 0 0 0
................................................................................................................TGACTGCCCGCAGCGCTGGA................................... 20 3 8 0.13 1 0 0 0 1 0 0 0 0 0
......................................................................CACCCACAACTCATATGT............................................................................... 18 2 9 0.11 1 0 1 0 0 0 0 0 0 0
.....................................................................AAAAACACAACTCATATGGGA............................................................................. 21 3 10 0.10 1 0 0 0 0 0 0 0 0 1
...........................................TGTCACTGTAAGATGTT........................................................................................................... 17 2 16 0.06 1 1 0 0 0 0 0 0 0 0
.........................................................................................ACCTAACGATTCAGGT.............................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

AACACCGGATACTCGCAGACCCAGTTATGTAGCTTTTATTACTATAGTGACATTCAACAACTACCACATTTTGGGTGTTGAGTATACCTTTGATTGCTAACTCCAGCTAAAAACATCCGGGCGTCGCGACCTTAGCGGTGTAAGCGGTAGACGCCGAAACGGTTAGG
**************************************************...((((((....(((.....))).))))))..((((((((....((((....)))).)))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR902009
testis
.....................CAGTTATGTAGCTTTTAT................................................................................................................................ 18 0 1 2.00 2 2 0 0 0 0
...................................................................ATGTTGGGAGTTGAGTATA................................................................................. 19 2 1 1.00 1 0 1 0 0 0
................AGACTAAGTTACGTAGCTTTTAT................................................................................................................................ 23 3 3 0.33 1 0 0 1 0 0
............................................................................................................................TGCGCCCCTAGCGGTGTAAG....................... 20 3 6 0.17 1 0 0 0 1 0
...................................................................ATGTTGGGAGTTGAGTA................................................................................... 17 2 8 0.13 1 0 1 0 0 0
...................................................................................................................................TTTGAGGTGTAAGCGGAAGA................ 20 3 20 0.05 1 0 0 0 0 1

Generated: 04/23/2015 at 10:15 PM