ID:

dsi_27894

 Coordinate:

2r:5777081-5777230 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [2r_5777231_5777284_+]; exon [2r_5777231_5777284_+]; intron [2r_5776067_5777230_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTTAACTCCTAAATAATGTTGTGATAAGCTTATCAAAAATAGGACTGGTTCAAATTGGACCATTAGAAAAGTATTAAGAGTAACCCAAAAGCTTATTAACAAAATATAGCAAGTAAAATTACTGATAAAGCTTTGTTGTACCGGGTATATAATAGTCGCAACACTTAACTTCAACGTTCTCTCTTATTTTTATGTTATAGATGTCAGCCGAATCTTCAAAAGGAGCTATTAACAATGGCTACGAACTGGA
**************************************************................(((((((...((((.(((....(((((((((..............((((....))))))).))))))(((((...(((.(((...))).))))))))............)))))))..))))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M023
head
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
........................................................................................................................................................................................................................CAAAAGGAGCTATTAACAAT.............. 20 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................AAAAGGAGCTATTAACAATGG............ 21 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................TTCAAAAGGAGCTATTAAC................. 19 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................AGATTACTGATAAAGCTTTGAAG................................................................................................................ 23 3 2 0.50 1 0 1 0 0 0 0 0
......................................................................................................................TTACTGATAAAGCTTTGAAGA............................................................................................................... 21 3 3 0.33 1 0 0 0 1 0 0 0
...................................................................................................................................TTTGTGGTACCCGGTATAAAA.................................................................................................. 21 3 4 0.25 1 0 0 0 0 0 0 1
........TTAAATAATGTTGTGA.................................................................................................................................................................................................................................. 16 1 12 0.25 3 0 0 0 0 0 3 0
...............................................................................................................................AACCTCTGTTGTACCGGTTA....................................................................................................... 20 3 4 0.25 1 0 0 0 0 1 0 0
..................................AAAAAGAGGACTGGT......................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 1 0 0 0 0
...........................................................................................................................GATTAAGCTTTGTTGT............................................................................................................... 16 1 8 0.13 1 0 0 1 0 0 0 0
.......................................TAGGACTGCTTTAAAATGGA............................................................................................................................................................................................... 20 3 8 0.13 1 0 0 1 0 0 0 0
................................................................................................................................ACCTTTGTTGTACCGGT......................................................................................................... 17 2 13 0.08 1 0 0 0 0 1 0 0

Anti-sense strand reads

GAATTGAGGATTTATTACAACACTATTCGAATAGTTTTTATCCTGACCAAGTTTAACCTGGTAATCTTTTCATAATTCTCATTGGGTTTTCGAATAATTGTTTTATATCGTTCATTTTAATGACTATTTCGAAACAACATGGCCCATATATTATCAGCGTTGTGAATTGAAGTTGCAAGAGAGAATAAAAATACAATATCTACAGTCGGCTTAGAAGTTTTCCTCGATAATTGTTACCGATGCTTGACCT
**************************************************................(((((((...((((.(((....(((((((((..............((((....))))))).))))))(((((...(((.(((...))).))))))))............)))))))..))))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
..........................................................................ATTCTCATTAGGTGTTCGA............................................................................................................................................................. 19 2 1 1.00 1 1 0 0 0 0 0
.......................................................................AGAATTCTCATTAGGTGTTCGA............................................................................................................................................................. 22 3 3 0.33 1 0 1 0 0 0 0
.....GAGGAGTTATTCCAAAACTAT................................................................................................................................................................................................................................ 21 3 3 0.33 1 0 0 1 0 0 0
.........................................................................AATTCTCATCGGGTTTT................................................................................................................................................................ 17 1 7 0.29 2 0 2 0 0 0 0
..................GACACTATTCGAGTAGTT...................................................................................................................................................................................................................... 18 2 9 0.22 2 0 0 0 2 0 0
.......................................................................AGAATTCTCATTAGGTGTTCG.............................................................................................................................................................. 21 3 6 0.17 1 1 0 0 0 0 0
.......................................................................................................................................................................................AAAAAAAATACAATATCTGCCGT............................................ 23 3 7 0.14 1 0 0 0 0 1 0
....................................................................................GGATTTCGAATAATTATT.................................................................................................................................................... 18 2 11 0.09 1 0 0 0 0 0 1
............................................................................................................................................................GTGTTGTGAATTGAA............................................................................... 15 1 16 0.06 1 0 0 0 1 0 0
.........................................................................................................................................................TCAGCGTTCGGAATTG................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0

Generated: 04/23/2015 at 10:09 PM