ID:

dsi_27889

 Coordinate:

3r:20620992-20621065 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.0 -1.8

Flybase annnotation

CDS [3r_20620785_20620969_+]; three_prime_UTR [3r_20620970_20621112_+]; exon [3r_20620785_20621112_+]

No Repeatable elements found

Sense Strand Reads

###########################################################################################################################################################################---
GCAACTTGGCTACTTTAAATGTCTATAGCTCTGATCTACTTACATAAATAGTATGTTTCTCTTATTTTGTTTATTCTATTATTTTGTTTTTCGGTTTAAATACATATGTAGGTACTTACGAAAGGAACATTCTTTTCAATAAAAGATTATTACTAAAACAGGAAACGGAAATGC
***************************************************************************((((.....(((((........))))).....))))..........***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 M025
embryo
 O002
Head
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
....................GTCTATAGCTCTGATCTA........................................................................................................................................ 18 0 1 3.00 3 1 0 2 0 0 0 0 0
......................................................................................................CATATGTAGGTACTTACGA..................................................... 19 0 1 2.00 2 0 0 2 0 0 0 0 0
................AAATGTCTATAGCTCTGATC.......................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0
...........................................................................................CGGTTTAAATACATATGTAGGTACT.......................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................ATTTTGTTTTTCGGTTTAAATAC....................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................TTACGAAAGGAACATTCTT........................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................TTAAATACATATGTAGGTACTTACGAAA................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................ATATGTAGGTACTTACGAAAGGAA............................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................CTATTATTTTGTTTTTCGGT............................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................TGTTTTTCGGTTTAAATACATAT................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................CATATGTAGGTACTTACGAAA................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
....................GTCTATAGCTCTGATCTACTT..................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0
.............................................................................ATTATTTTGTTTTTCGGTTTAAATAC....................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
..AACTTGGCTACTTTAAATGTCTAT.................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................ATATGTAGGTACTTACGA..................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
....................GTCTATAGCTCTGATCTAC....................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................TTTTCTAATAAAAGATTATTACTAAAACAG............. 30 3 1 1.00 1 0 0 0 0 1 0 0 0
......................CTATAGCTCTGATCTACTTACATA................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0
......................CTATAGCTCTGATCTACTTAC................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................TTGTTTTTCGGTTTAAATACATATGT................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................AAATACATATGTAGGTACTTACGAAAG.................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
......................CTATAGCTCTGATCTACT...................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
......................CTATAGCTCTGATCTACTTACATAAATA............................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................TTTCGGTTTAAATACATATGTAGGTACT.......................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................TTCGGTTTAAATACATATGTAGGTACT.......................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................GTAGGTACCTGCGGAAGGA................................................ 19 3 18 0.56 10 0 0 0 0 0 5 4 1
...........................................................................................................GTAGGTACCTGCGGAAGG................................................. 18 3 20 0.10 2 0 0 0 0 0 2 0 0
...................................................................................................................GTACGAAAGGACCGTTCT......................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

CGTTGAACCGATGAAATTTACAGATATCGAGACTAGATGAATGTATTTATCATACAAAGAGAATAAAACAAATAAGATAATAAAACAAAAAGCCAAATTTATGTATACATCCATGAATGCTTTCCTTGTAAGAAAAGTTATTTTCTAATAATGATTTTGTCCTTTGCCTTTACG
*****************************************************((((.....(((((........))))).....))))..........*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
............................................................................................................................CTAGTAAGAAAGGTTATTTT.............................. 20 2 4 0.25 1 1 0 0
............................................................................................................................CTAGTAAGAAAGGTTATTTTGT............................ 22 3 8 0.13 1 0 1 0
...............................ACTAGGTGAATGTATTTG............................................................................................................................. 18 2 9 0.11 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:20620942-20621115 + dsi_27889 GCAACTTGGCTACTTTA-AATG-TCTATAGCTC-------TGATCTACTTACATAAATAGTATGTTTCTCTTATTTTG------------------------------------------------------------------------------------------TTTATTCTATTATTTTGTTTTTCGGTTTAA-------------------------------ATACATAT-----------------------------------GTAGGTACTTACGAAAGGAA-----CATTCTTTT--------------------------C--AATAAAAGATTATTACTAAAACAGGAAACGGAAATGC-----
droSec2 scaffold_33:371909-372100 + GCAACTTGGCTACTTTA-AATG-TCTATAGCTC-------TGATCTACTTACATTAAT---ATGTTTCCTTTATTTTGTTAATCCATTATATACTTATACTTATACATACATACTTATACTTATACATA----------------------------------------------------------------------------------------------------ATACTTAT-----------------------------------GTAGGTACTTACGAAAGGTA-----CATTTATTT--------------------------C--AATAAAAGATTATTACTAAAACAAGAAACGGAAATGC-----
dm3 chr3R:21110785-21110959 + GCAACTTGGCTACTTTA-AATG-TCTATAGCTC-------TCATTTATTTACATAAAT---ATGTTGCCCTTATTTTG------------------------------------------------------------------------------------------TTTATTCCATTATTTTGTTTTCCGGTTGAA-------------------------------ATACATATGTAC-------------------------------ATAAGTACTTACGAAAGGAA-----CATTTCTTC--------------------------C--AATAAAAGATTATTACTGAAACATGAAACGGAAAGAC-----
droEre2 scaffold_4820:6932439-6932637 - GCAACTGGGCTACTTTA-AAGG-TCTATAGTTA-------TGATTTATTTTTATAAAT---GTGTTTCTCTTGTTTTGTTTATACCGCCTAC---------------------------------------------------------------ACCCA------------------------------------------------------TTTTGTTATTGTTTTATACATATTTATGTAT----TCAAGTCTCTTAAGTTTAAATATATAAATACCTAAAAAAGGTA-----AATTTTGTT--------------------------A--A-------AATATTACTGGAACAGGAAACGGAAATGT-----
droYak3 3R:25377756-25377931 - GCAACTGGGCTACTTTA-AGGG-TCTATAGCTT-------TGATTTATAT----AA---------------------------------------------------------------------------------------------------ACCCA------------------------------------------------------TTTTGTTATTGTTTTATACATATTTAAGTATATGTTGATGTTT----------------------TTTAAAAAAGCTA-----AAATT-GTTAATATTGTTACTAAAATATATTGTTAC--TAAATAATATTGTTACTAAAACAGGAAACGGAAATGA-----
droEug1 scf7180000409692:266772-266836 - AGAAATGGGATATTTTA-AGGA-TCTGTAGATC-------TAGATTAA-----AGA---------------------------------------------------------------------------------------------------G-----CTAGTTA-----------------------------------------------------------------------------------------C---------------------------------------------------------------------------TCAATAG-------------------------G-----CAGGTT
droBia1 scf7180000302136:1927285-1927402 + GAAGCTTGGCTATTTCA-AAGG-TCTATAATG----------ATTTATGATGATAA---------------------------------------------------------------------------------------------------A-----CT---------------------------------AACATTTCTAGTCTTATACTGTATAACAAATTTATATATATTTGTGGAA----AT------------------------------------AAAAA-----TATTTTGTT--------------------------T--AATAA-------------------------------------
droTak1 scf7180000413457:118412-118493 + GGAATTGGGATACTTTA-AAGA-TCTGTAAATTAAAATTTTGATA-----AAAAAAAA---ATATT-------------------------------------------------------------------------------------------TTAAAATGTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGTAT-------------------------A-----TTACTT
droEle1 scf7180000491212:466775-466812 + AAAACTGGGCTACTTTA-AGGG-TCTTTAATTT-------CAATATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779365:140058-140235 - AAAACTGGGCTACTTCA-AGGG-TCTTTAATTT-------TTAAATT--------------------------------------------------------------------------GATTCATAATACCAAAAGTTGTAATAATAAAATAAGCCAACCTGTTA-----------------TTTGTTGAACTAA-------------------------------CATCTGCA-----------------------------------ATAAAGAAAAACTAAAAGAACAATACAATTTCTT--------------------------T--TAGAAAATAAAATGAGTAAGTAAAAAAGTATAAACAT-----
droFic1 scf7180000454055:1028304-1028344 + AGAAGTGGGATATTTTA-AAGA-TCTATGAACT-------TAATCAACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droKik1 scf7180000302307:770595-770657 + AAAACTGGGTTACTTCA-AGGG-GCTTTAATAT-------ATATATATT------------TGGTT---------------------------------------------------------------------------------------------------TTT----------------------------------------------------------------------------------------------------------------------------------------T----------------------------CTAATGA-------------------------A-----TTCACT
droAna3 scaffold_13340:1306868-1306895 + AGAACTGGGGTATTTTA-ATGA-TTTATAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396712:520499-520525 - AGAACTGGGCTATTTTA-AAAA-TTTATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 2:20559530-20559557 - ACAAATAGGCTATTTTA-AGGA-TCTATAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_3:3282657-3282726 + TAGATTGGGCTACTTTG-AAGA-ACTATGAGCA-AAGCATTGACTTGT--------------------------TATG------------------------------------------------------------------------------------------AATTTTCATGAATTTTATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT
droWil2 scf2_1100000004943:13512158-13512214 - AAGGCTTGGCTATTTTG-ATGG-TATTTAAAAA-------TGAAGCA---------------------------------------------------------------------------------------------------------------------ATTA-----------------------------------------------------------------------------------------A---------------------------------------------------------------------------TAAATGA-------------------------A-----TTATTT
droVir3 scaffold_13047:2286495-2286521 - GAAAGAGGGATACTTTGCAAAG-TCTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:22622800-22622848 + AAAATTTGGATATTTTG-ACTGATTTATATAAC-------ATGTATAA-----------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------A-----TCATAT
droGri2 scaffold_14906:9143507-9143559 - AAAACTGGGATATTTTG-ATTG--ATATGGATA-------TGTT-TGATAAGATAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----T-AATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCAACTTGGCTACTTTA-AATG-TCTATAGCTC-------TGATCTACTTACATAAATAGTATGTTTCTCTTATTTTG------------------------------------------------------------------------------------------TTTATTCTATTATTTTGTTTTTCGGTTTAA-------------------------------ATACATAT-----------------------------------GTAGGTACTTACGAAAGGAA-----CATTCTTTT--------------------------C--AATAAAAGATTATTACTAAAACAGGAAACGGAAATGC-----SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................G-TCTATAGCTC-------TGATCTA..........................................................................................................................................................................................................................................................................................................................................1813.00301200000000000000
........................................................................................................................................................................................................................................CATAT-----------------------------------GTAGGTACTTACGA...........................................................................................1912.00200200000000000000
................A-AATG-TCTATAGCTC-------TGATC............................................................................................................................................................................................................................................................................................................................................2012.00202000000000000000
..............................................................................................................................................................................................CGGTTTAA-------------------------------ATACATAT-----------------------------------GTAGGTACT................................................................................................2511.00101000000000000000
...................................................................................................................................................................................ATTTTGTTTTTCGGTTTAA-------------------------------ATAC................................................................................................................................................2311.00101000000000000000
........................................................................................................................................................................................................................................................................................TTACGAAAGGAA-----CATTCTT.........................................................................1911.00101000000000000000
..................................................................................................................................................................................................TTAA-------------------------------ATACATAT-----------------------------------GTAGGTACTTACGAAA.........................................................................................2811.00101000000000000000
.........................................................................................................................................................................................................................................ATAT-----------------------------------GTAGGTACTTACGAAAGGAA-----................................................................................2411.00100010000000000000
..............................................................................................................................................................................CTATTATTTTGTTTTTCGGT.......................................................................................................................................................................................2011.00100010000000000000
.......................................................................................................................................................................................TGTTTTTCGGTTTAA-------------------------------ATACATAT-----------------------------------.........................................................................................................2311.00100010000000000000
........................................................................................................................................................................................................................................CATAT-----------------------------------GTAGGTACTTACGAAA.........................................................................................2111.00100010000000000000
.....................G-TCTATAGCTC-------TGATCTACTT.......................................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
................................................................................................................................................................................ATTATTTTGTTTTTCGGTTTAA-------------------------------ATAC................................................................................................................................................2611.00101000000000000000
..AACTTGGCTACTTTA-AATG-TCTAT.............................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
.........................................................................................................................................................................................................................................ATAT-----------------------------------GTAGGTACTTACGA...........................................................................................1811.00100010000000000000
.....................G-TCTATAGCTC-------TGATCTAC.........................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
........................CTATAGCTC-------TGATCTACTTACATA..................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
........................CTATAGCTC-------TGATCTACTTAC.....................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
......................................................................................................................................................................................TTGTTTTTCGGTTTAA-------------------------------ATACATAT-----------------------------------GT.......................................................................................................2611.00100010000000000000
....................................................................................................................................................................................................AA-------------------------------ATACATAT-----------------------------------GTAGGTACTTACGAAAG........................................................................................2711.00101000000000000000
........................CTATAGCTC-------TGATCTACT........................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
........................CTATAGCTC-------TGATCTACTTACATAAATA..............................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
...........................................................................................................................................................................................TTTCGGTTTAA-------------------------------ATACATAT-----------------------------------GTAGGTACT................................................................................................2811.00101000000000000000
............................................................................................................................................................................................TTCGGTTTAA-------------------------------ATACATAT-----------------------------------GTAGGTACT................................................................................................2711.00101000000000000000
droSec2
GCAACTTGGCTACTTTA-AATG-TCTATAGCTC-------TGATCTACTTACATTAAT---ATGTTTCCTTTATTTTGTTAATCCATTATATACTTATACTTATACATACATACTTATACTTATACATA----------------------------------------------------------------------------------------------------ATACTTAT-----------------------------------GTAGGTACTTACGAAAGGTA-----CATTTATTT--------------------------C--AATAAAAGATTATTACTAAAACAAGAAACGGAAATGC-----SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................A----------------------------------------------------------------------------------------------------ATACTTAT-----------------------------------GTAGGTACTTACGAAAGGT......................................................................................2815.0050500
...........................................................................................................................................................................................................................................AT-----------------------------------GTAGGTACTTACGAAAGGT......................................................................................2113.0030300
................................................................................................................................................................................................................................................................................GTAGGTACTTACGAAAGGT......................................................................................1912.0022000
............................................................................................................................................................................................................................................T-----------------------------------GTAGGTACTTACGAAAGGT......................................................................................2012.0020200
......................................................................................................ATACATACATACTTATACTTATACAT.........................................................................................................................................................................................................................................................2612.0022000
..AACTTGGCTACTTTA-AATG-TC................................................................................................................................................................................................................................................................................................................................................................2111.0010001
.....................G-TCTATAGCTC-------TGATCTACTTAC.....................................................................................................................................................................................................................................................................................................................................2311.0011000
.......................................................................................................................................................................................................................................ACTTAT-----------------------------------GTAGGTACTTACGAAAGGT......................................................................................2511.0011000
...............TA-AATG-TCTATAGCTC-------TGAT.............................................................................................................................................................................................................................................................................................................................................2011.0010100
.......................................................AAT---ATGTTTCCTTTATTTTGTT.........................................................................................................................................................................................................................................................................................................2211.0010100
.................................................................................................................................................................................................................................................................................................................T--------------------------C--AATAAAAGATTATTACTA........................2011.0011000
...........................................................................................................................................................................................................................................AT-----------------------------------GTAGGTACTTACGAAAGGTA-----................................................................................2211.0011000
.......................................................................................................TACATACATACTTATACTTATACATA----------------------------------------------------------------------------------------------------....................................................................................................................................................2611.0011000
.........................................................................................................................................................................................................................................TTAT-----------------------------------GTAGGTACTTACGAAAGGTA-----................................................................................2411.0010100
.....................................................................................................................................................................................................................................ATACTTAT-----------------------------------GTAGGTACTTACGAAAGGTA-----................................................................................2811.0011000
.....................................................................................................................................................................................................................................ATACTTAT-----------------------------------GTAGGTACTTACGAAA.........................................................................................2411.0011000
..........................ATAGCTC-------TGATCTACTTACA....................................................................................................................................................................................................................................................................................................................................2011.0011000
...ACTTGGCTACTTTA-AATG-TCTA..............................................................................................................................................................................................................................................................................................................................................................2211.0010010
...ACTTGGCTACTTTA-AATG-T.................................................................................................................................................................................................................................................................................................................................................................1911.0010100
................................................................................................................................A----------------------------------------------------------------------------------------------------ATACTTAT-----------------------------------GTAGGTACTTA..............................................................................................2011.0011000
.....................................................................................................................................................................................................................................ATACTTAT-----------------------------------GTAGGTACTTACGAAAGGT......................................................................................2711.0011000
.......................................................................................................................................................................................................................................ACTTAT-----------------------------------GTAGGTACTTACGAAAGGTA-----CA..............................................................................2811.0010010
..AACTTGGCTACTTTA-AATG-TCTAT.............................................................................................................................................................................................................................................................................................................................................................2411.0011000
..........................................................................................................................................................................................................................................TAT-----------------------------------GTAGGTACTTACGAAAGGT......................................................................................2211.0011000
.............TTTA-AATG-TCTATAGCTC-------T................................................................................................................................................................................................................................................................................................................................................1911.0010010
..........................................................................................................................................................................................................................................TAT-----------------------------------GTAGGTACTTACGAAAGGTA-----................................................................................2311.0010100
..AACTTGGCTACTTTA-AATG-TCTATAGC..........................................................................................................................................................................................................................................................................................................................................................2711.0011000
...........ACTTTA-AATG-TCTATAGCTC-------TGATCTAC.........................................................................................................................................................................................................................................................................................................................................2811.0011000
dm3
GCAACTTGGCTACTTTA-AATG-TCTATAGCTC-------TCATTTATTTACATAAAT---ATGTTGCCCTTATTTTG------------------------------------------------------------------------------------------TTTATTCCATTATTTTGTTTTCCGGTTGAA-------------------------------ATACATATGTAC-------------------------------ATAAGTACTTACGAAAGGAA-----CATTTCTTC--------------------------C--AATAAAAGATTATTACTGAAACATGAAACGGAAAGAC-----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................ATTCCATTATTTTGTTTTCCGGTTGA....................................................................................................................................................................................2616.0060000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................ATGTAC-------------------------------ATAAGTACTTACGAAAGG.......................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................AGATTATTACTGAAACATGA................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TAAAAGATTATTACTGAAACAT..................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................TTATTACTGAAACATGAAAAA............2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................AGATTATTACTGAAACATGAA...............2112.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TC--------------------------C--AATAAAAGATTATTACTGAAACATG.................2812.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................TTGCCCTTATTTTG------------------------------------------------------------------------------------------TTTATTCCATTAT....................................................................................................................................................................................................2712.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TTC--------------------------C--AATAAAAGATTATTACTGAAACA...................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................AT---ATGTTGCCCTTATTTTG------------------------------------------------------------------------------------------TT...............................................................................................................................................................................................................2112.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................C--------------------------C--AATAAAAGATTATTACTGAAACATG.................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................ATTATTTTGTTTTCCGGTTGAA-------------------------------....................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................AC-------------------------------ATAAGTACTTACGAAAGGAA-----C...............................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................TTATTACTGAAACATGAAA..............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................TTTTGTTTTCCGGTTGAA-------------------------------....................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................TTCCGGTTGAA-------------------------------ATACATAT............................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................ACTTACGAAAGGAA-----CATTT...........................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................TATTTTGTTTTCCGGTTGAA-------------------------------....................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TTTCTTC--------------------------C--AATAAAAGATTATTACTGTT......................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................ATATGTAC-------------------------------ATAAGTACTT...............................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TATTTTGTTTTCCGGTTGAA-------------------------------A...................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................AAAGATTATTACTGAAACATG.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TTC--------------------------C--AATAAAAGATTATTACTGAAACATG.................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................TTCCATTATTTTGTTTTCCGGTTG.....................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TTACGAAAGGAA-----CATTT...........................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................ATTTTG------------------------------------------------------------------------------------------TTTATTCCATTATTT..................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................ATTTTGTTTTCCGGTTGAA-------------------------------....................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
........................................................................................................................................................................TTTATTCCATTATTTTGTTTT............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TTC--------------------------C--AATAAAAGATTATTACT.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................TTTCCGGTTGAA-------------------------------ATACATATGTAC-------------------------------.........................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AACTTGGCTACTTTA-AATG-TCTATAG...........................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................CGGTTGAA-------------------------------ATACATATGTAC-------------------------------AT.......................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TTC--------------------------C--AATAAAAGATTATTACTG........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................ATATGTAC-------------------------------ATAAGTACTTACGAAAGGAA-----................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................ATGTAC-------------------------------ATAAGTACTTACGAAAGGAA-----CATT............................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................CATTATTTTGTTTTCCGGTTGA....................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................TATTACTGAAACATGAAAAA............2040.7530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCAACTGGGCTACTTTA-AAGG-TCTATAGTTA-------TGATTTATTTTTATAAAT---GTGTTTCTCTTGTTTTGTTTATACCGCCTAC---------------------------------------------------------------ACCCA------------------------------------------------------TTTTGTTATTGTTTTATACATATTTATGTAT----TCAAGTCTCTTAAGTTTAAATATATAAATACCTAAAAAAGGTA-----AATTTTGTT--------------------------A--A-------AATATTACTGGAACAGGAAACGGAAATGT-----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................GTGTTTCTCTTGTTTTGTT.........................................................................................................................................................................................................................................................................................................1911.0010000100
........................................................................................................................................................................................................................................CATATTTATGTAT----TCAAGTCTCTTAAGT.................................................................................................................2811.0010000100
.CAACTGGGCTACTTTA-AAGG-T.................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.....................................................................CTTGTTTTGTTTATACCGC.................................................................................................................................................................................................................................................................................................1911.0010000010
..AACTGGGCTACTTTA-AAGG-T.................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
...........................................................................................................................................................................................................................................................................................................................................................TTACTGGAACAGGAAACGGAA.........2111.0010000100
..AACTGGGCTACTTTA-AAG....................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
..........................................................................................................................................................................................................................................................................................................................................................ATTACTGGAACAGGAAACGG...........2011.0010000100
...................................................................................................................................................................................................................................................AT----TCAAGTCTCTTAAGTTT...............................................................................................................1911.0010000100
.......................................................AAT---GTGTTTCTCTTGTTTTGTT.........................................................................................................................................................................................................................................................................................................2211.0010000010
..........TACTTTA-AAGG-TCTATAGTTA-------TGATTT...........................................................................................................................................................................................................................................................................................................................................2711.0010000010
........................................................................................................................................................................................................................................................................................................................................................ATATTACTGGAACAGGAAAC.............2011.0010000100
droYak3
GCAACTGGGCTACTTTA-AGGG-TCTATAGCTT-------TGATTTATAT----AA---------------------------------------------------------------------------------------------------ACCCA------------------------------------------------------TTTTGTTATTGTTTTATACATATTTAAGTATATGTTGATGTTT----------------------TTTAAAAAAGCTA-----AAATT-GTTAATATTGTTACTAAAATATATTGTTAC--TAAATAATATTGTTACTAAAACAGGAAACGGAAATGA-----SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................ATTTAAGTATATGTTGATGT..........................................................................................................................2014.00400000040000
................................................................................................................................................................................................................................................................T----------------------TTTAAAAAAGCTA-----AAATT-GTTA......................................................................2312.00200000020000
............................................................................................................................................................................................................................................................................................................................................................TACTAAAACAGGAAACGGA..........1912.00200000020000
..AACTGGGCTACTTTA-AGGG-TCT...............................................................................................................................................................................................................................................................................................................................................................2212.00200000020000
..........................ATAGCTT-------TGATTTATAT----AA---------------------------------------------------------------------------------------------------AC............................................................................................................................................................................................................................2112.00201001000000
.CAACTGGGCTACTTTA-AGGG-TCT...............................................................................................................................................................................................................................................................................................................................................................2312.00201000010000
................................................................................................................................................................................................................................................................T----------------------TTTAAAAAAGCTA-----AAATT-G.........................................................................2011.00100000010000
..........................................................................................................................................................................................................................................TATTTAAGTATATGTTGATGTTT----------------------..................................................................................................2311.00100000010000
...................................................................................................................................................................................................................................................................................................................ATATTGTTACTAAAATATAT..................................................2011.00101000000000
............................................................................................................................................................................................................................................................................................................................................................TACTAAAACAGGAAACGGAA.........2011.00100000010000
...............................................TAT----AA---------------------------------------------------------------------------------------------------ACCCA------------------------------------------------------TTTTGTTATT.........................................................................................................................................................2011.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................TGTTACTAAAACAGGAAACGGAAAT.......2511.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................GTTACTAAAACAGGAAACGG...........2011.00101000000000
.......................................................................................................................................................................................................................................................GTTGATGTTT----------------------TTTAAAAAAGCTA-----................................................................................2311.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................ATATTGTTACTAAAACAGGAAACGGA..........2611.00100000010000
......................................................................................................................................................................................................................................................TGTTGATGTTT----------------------TTTAAAAA..........................................................................................1911.00100000010000
........................CTATAGCTT-------TGATTTATAT----AA---------------------------------------------------------------------------------------------------ACCCA------------------------------------------------------TT.................................................................................................................................................................2811.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................TTACTAAAACAGGAAACGGA..........2011.00100000010000
........................................................................................................................................................................................................................................................................................TTAAAAAAGCTA-----AAATT-GTTAAT....................................................................2311.00101000000000
.........CTACTTTA-AGGG-TCTATAGCTT-------T................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................ATTGTTACTAAAACAGGAAACGGA..........2411.00100000010000
.......................................................................................................................................................................................................................................................GTTGATGTTT----------------------TTTAAAAAAG........................................................................................2011.00101000000000
..AACTGGGCTACTTTA-AGGG-T.................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
........GCTACTTTA-AGGG-TCTATA............................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.................................................................................................................................................................................................................................................GTATATGTTGATGTTT----------------------TTT...............................................................................................1911.00101000000000
..........................................................................................................................................................................................................................................................GATGTTT----------------------TTTAAAAAAGCT......................................................................................1911.00100000010000
..........TACTTTA-AGGG-TCTATAGCTT-------T................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.............................................................................................................................................................................................................................................TTAAGTATATGTTGATGTTT----------------------T.................................................................................................2111.00101000000000
..........TACTTTA-AGGG-TCTATAGCT.........................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
GCAACTGGGCTACTTTA-AGGG-T.................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
...........................................................................................................................................................................................................................................ATTTAAGTATATGTTGATGTT.........................................................................................................................2111.00100000010000
............................................................................................................................................................................................................................................TTTAAGTATATGTTGATGT..........................................................................................................................1911.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................GTTACTAAAACAGGAAAC.............1811.00101000000000
..........TACTTTA-AGGG-TCTATAGCTT-------TGAT.............................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................ATTGTTACTAAAACAGGAAACGG...........2311.00100000010000
.....................................................................................................................................................................................................................................................ATGTTGATGTTT----------------------TTTAAAAAA.........................................................................................2111.00101000000000
................................................................................................................................................................................................................................................................................................................................................................AAAACAGGAAACGGAAATG......1920.50100000010000
droEug1
AGAAATGGGATATTTTA-AGGA-TCTGTAGATC-------TAGATTAA-----AGA---------------------------------------------------------------------------------------------------G-----CTAGTTA-----------------------------------------------------------------------------------------C---------------------------------------------------------------------------TCAATAG-------------------------G-----CAGGTTSizeHit CountTotal NormTotal
No Reads
droBia1
GAAGCTTGGCTATTTCA-AAGG-TCTATAATG----------ATTTATGATGATAA---------------------------------------------------------------------------------------------------A-----CT---------------------------------AACATTTCTAGTCTTATACTGTATAACAAATTTATATATATTTGTGGAA----AT------------------------------------AAAAA-----TATTTTGTT--------------------------T--AATAA-------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GGAATTGGGATACTTTA-AAGA-TCTGTAAATTAAAATTTTGATA-----AAAAAAAA---ATATT-------------------------------------------------------------------------------------------TTAAAATGTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGTAT-------------------------A-----TTACTTSizeHit CountTotal NormTotal
No Reads
droEle1
AAAACTGGGCTACTTTA-AGGG-TCTTTAATTT-------CAATATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AAAACTGGGCTACTTCA-AGGG-TCTTTAATTT-------TTAAATT--------------------------------------------------------------------------GATTCATAATACCAAAAGTTGTAATAATAAAATAAGCCAACCTGTTA-----------------TTTGTTGAACTAA-------------------------------CATCTGCA-----------------------------------ATAAAGAAAAACTAAAAGAACAATACAATTTCTT--------------------------T--TAGAAAATAAAATGAGTAAGTAAAAAAGTATAAACAT-----SizeHit CountTotal NormTotal
No Reads
droFic1
AGAAGTGGGATATTTTA-AAGA-TCTATGAACT-------TAATCAACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droKik1
AAAACTGGGTTACTTCA-AGGG-GCTTTAATAT-------ATATATATT------------TGGTT---------------------------------------------------------------------------------------------------TTT----------------------------------------------------------------------------------------------------------------------------------------T----------------------------CTAATGA-------------------------A-----TTCACTSizeHit CountTotal NormTotal
No Reads
droAna3
AGAACTGGGGTATTTTA-ATGA-TTTATAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AGAACTGGGCTATTTTA-AAAA-TTTATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
ACAAATAGGCTATTTTA-AGGA-TCTATAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TAGATTGGGCTACTTTG-AAGA-ACTATGAGCA-AAGCATTGACTTGT--------------------------TATG------------------------------------------------------------------------------------------AATTTTCATGAATTTTATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AAGGCTTGGCTATTTTG-ATGG-TATTTAAAAA-------TGAAGCA---------------------------------------------------------------------------------------------------------------------ATTA-----------------------------------------------------------------------------------------A---------------------------------------------------------------------------TAAATGA-------------------------A-----TTATTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...GCTTGGCTATTTTG-ATGG-T.................................................................................................................................................................................................................................................................................................................................................................1911.00101000
..............................AAA-------TGAAGCA---------------------------------------------------------------------------------------------------------------------ATTA-----------------------------------------------------------------------------------------A---------------------------------------------------------------------------TAAATGA-------------------------A-----T.....2411.00101000
droVir3
GAAAGAGGGATACTTTGCAAAG-TCTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...AGAGGGATACTTTGCAAA....................................................................................................................................................................................................................................................................................................................................................................1811.001000000010000000000000000000000000000000000000000000000000000000
droMoj3
AAAATTTGGATATTTTG-ACTGATTTATATAAC-------ATGTATAA-----------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------A-----TCATATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......TGGATATTTTG-ACTGATTTATGG...........................................................................................................................................................................................................................................................................................................................................................2311.001100000
.....TTGGATATTTTG-ACTGATTT...............................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
AAAACTGGGATATTTTG-ATTG--ATATGGATA-------TGTT-TGATAAGATAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----T-AATGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................G-ATTG--ATATGGATA-------TGTT-TGAT........................................................................................................................................................................................................................................................................................................................................2211.00110
............TTTTG-ATTG--ATATGGATA-------TGT..............................................................................................................................................................................................................................................................................................................................................2111.00101

Generated: 05/18/2015 at 01:59 PM