ID:

dsi_27878

 Coordinate:

3r:25270655-25270804 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

0.0 0.4 0.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AATAACCACTCTAAAGCCAAATAAAAGCGCCGAACAACCAAGTTCAAAAGGTAAAAGATCAACAGAAGCGAAGTTAATAAATTACATAAAAAGCCTGCAGTTTTTTTATACACCTGTGAACCTCGTGAAAAAATAATAAAAAGTCAGCCTGAAGAAAATAAAAGCAAGCTAAAAAAAACACAAAAGTTGACAAAAATAAACTTAATCACACACACACGCGGGACCTATATGCAAATTATAAAAAACATAT
***********************************************************************************************************...(((...........)))..............................********************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
...........................................................................................................ATACACCTGTGAACCTCGT............................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................ATAAAAAGTCAGCCTGAAGAAA............................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................TAAAAAGTCAGCCTGAAGAAAATAAA........................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................AAATTACATAAAAAGCCTGCAGTT.................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......ACTCTAAAGCCAAATAAAAGCGCC........................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................AAAATGTCCGCCTGAAGA............................................................................................... 18 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0
.........................................GTTCAAAAGGTAAAAGAC............................................................................................................................................................................................... 18 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATGAACCTCTTGAAAAAAAA................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0
.....................TAAAAGCGCTGAACAACCAAAA............................................................................................................................................................................................................... 22 3 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0
...................................................................GCGCAGTTAATAAACTAC..................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0
...............................................................................CACTACATGAAAAGCCTGCA....................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................TCACACACACACTGGGGAC.......................... 19 2 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0
.........................................GTTCAAAAGCTAAAAG................................................................................................................................................................................................. 16 1 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................GCTAGCTAAAAAAAA........................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................AAGGTGACAAGAAGAAACT................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

TTATTGGTGAGATTTCGGTTTATTTTCGCGGCTTGTTGGTTCAAGTTTTCCATTTTCTAGTTGTCTTCGCTTCAATTATTTAATGTATTTTTCGGACGTCAAAAAAATATGTGGACACTTGGAGCACTTTTTTATTATTTTTCAGTCGGACTTCTTTTATTTTCGTTCGATTTTTTTTGTGTTTTCAACTGTTTTTATTTGAATTAGTGTGTGTGTGCGCCCTGGATATACGTTTAATATTTTTTGTATA
*********************************************************************************************...(((...........)))..............................*********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
...................................................................................................................................TTATTATTTTTCAGTCGGACT.................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
........GAGATTTCGGTTTATTT................................................................................................................................................................................................................................. 17 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................GATGGTTCAGGTTTTCTATTTT.................................................................................................................................................................................................. 22 3 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................TCAGTCGGACTTCTTTTATTT........................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0
.......................................................TCTAGTTGTCTTCGCTTCAAT.............................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................................ATGTTTTCAACTGTTTTTATTT.................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0
............................................GTTTTCCATTTTCTAGTTGTC......................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0
.......................................................................................TTTTTCGGACGTCAAAAAAAT.............................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0
...............CGGTTTAATTTGGCGGCTT........................................................................................................................................................................................................................ 19 2 3 0.67 2 0 0 0 2 0 0 0 0
.................................................................................................................................................................................TGTGTTTTCAACTGTCTTTTTGT.................................................. 23 3 3 0.67 2 0 2 0 0 0 0 0 0
.......AGAGATTTCGGTTTATTT................................................................................................................................................................................................................................. 18 1 4 0.25 1 0 1 0 0 0 0 0 0
..............TCGGTTGATTTTCGGGGTTTGT...................................................................................................................................................................................................................... 22 3 6 0.17 1 0 0 0 0 0 0 1 0
.............................................TTTTCTATTTACTAGTTCTCT........................................................................................................................................................................................ 21 3 20 0.10 2 0 2 0 0 0 0 0 0
....................................................................................................................................AATTATTTTTCAGTCGGGCT.................................................................................................. 20 2 10 0.10 1 1 0 0 0 0 0 0 0
...........................................................................................TCGGACATAAAAAAAATAT............................................................................................................................................ 19 2 14 0.07 1 0 0 0 0 1 0 0 0
..........................CTCGGCTTGTTGGTT................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 1
...................................................................................................................................................................AGTTTGATTTTTTCTGTGTTT.................................................................. 21 3 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:25270605-25270854 + dsi_27878 AATA--ACCACTCTA---------------AAG--CCAAAT-------AAA--A-GCG---CCGAAC----AACC---AAGTTCAAAAGGTAAAA-GATCAAC--------------------A--------------------------------------------GA----------------------------------------------------------A-GC-GAAGTTAA-TAAATTACATAAAA-AGCC-----------------TGCA-GTTTTTTTATA-----CACCT-GTGAACCTCGTGA--------------------AAA-AATAAT--------------AAAAAGTCAGCCTGAA--GAAAATAAAA--GC-AA-GCT----AAA-----AAAAACACA----------A--AAG--TTGACAAAAATAAACTTAATCACA--------------------------------------------CACACACGCGG-GA-CCT--ATATGCAAATTAT--AAAA---AACATAT
droSec2 scaffold_4:4770063-4770312 + AATA--ACCACTCTA---------------AAG--CCAAAT-------AAA--A-GCG---CTGAAC----AACC---AAGTTCAAAAGGTAAAA-GATCAAC--------------------A--------------------------------------------GA----------------------------------------------------------A-GC-GAAGTTAA-TAAATTACATAAAA-AGCC-----------------TGCA-GTTTTTTTATA-----CACCT-GTGAACCTCGTGA--------------------AAA-AATAAT--------------AAAAAGTCAGCCTGAA--GAAAATAAAA--GC-AA-GCT----AAA------AAAATACT----------A--AAG--TTGACAAAAATAAACTTAATCACA--------------------------------------------CACACACGCGGGGG-CCT--ATATGCAAATTAT--AAAA---AACATAT
dm3 chr3R:25925591-25925845 + AATA--ACCACTCAA---------------AAG--CCAAAT-------AAA--A-GCG---GTGAAC----AACT---AAGTTCAAAAGGTAAAA-GATCAAC--------------------A--------------------------------------------GA----------------------------------------------------------A-GC-GAAATTAA-TAAATTACATAAAA-AGCC-----------------TGCA-GTTTTTTTATA-----CACCT-GTGAACCTCGTGA--------------------AAA-AATAAT--------------AAAAAGTCAGCCTGAA--GAAAATAA---AACAAA-GCT----AAAAA-AAAAAAATACA----------A--AAG--TTGACAAAAATAAACTTAATCACA--------------------------------------------CACACACGCGGGGG-CCT--ATATGCAAATTAT--AAAA---AACATAT
droEre2 scaffold_4820:2074941-2075193 - AATA--ACCACTCAA---------------AAG--CCAAAT-------AAA--A-GCG---CTGAAC----AACC---AAGTTCAAAAGGTAAAA-GATCAAC--------------------A--------------------------------------------GA----------------------------------------------------------A-GC-GAAGTTAA-CAAATTACATAAAA-AGTC-----------------TGCA-GTTTTTTTATA-----CACCT-GTGAATCTCGTGA--------------------AAA-AATAAT--------------AAAAAGTCAGCCTAAA--GAATATAAAAAT-CCAA-GCG----AAA-----AAAAATACA----------A--AAG--TTGACAAAAATAAATTTAATCACA--------------------------------------------CACACAAGTGGGGG-CCT--ATATGCAAATTAT--AAAA---AACATAT
droYak3 3R:26856082-26856338 + AATA--ACCACTCAA---------------AAG--CCAAAT-------AAA--A-GCG---CTGAAC-------C---AAGTTCAAAAGGTAAAA-GATCAAC--------------------A--------------------------------------------GA----------------------------------------------------------A-GC-GAAGTTAA-TAAATTACATAAAA-AGCC-----------------TGCA-GTTTTTTTATA-----CACCT-GTGAACCTCGTGAAAATATAA--------------A-AATAAT--------------AAAAAGTCAGCCTCAA--GAATATAA---AATCAA-GCT----AAAA--AAAAAAATACA----------A--AAG--TTGACAAAAATAAACTTAATCACA--------------------------------------------CACACAAGTGGGGG-CCT--ATATGCAAATTAT--AAAA---AACATAT
droEug1 scf7180000409555:408335-408587 + ATTA--ATCACTCAA---------------AAAA-GC-AGT-------AAA--ACGCG---CTGAAC----AACCG--AAGTTCAAAAGGTAAAG-GATCAAC---G----------------A--------------------------------------------GA----------------------------------------------------------A-GC-AAAGTTAA-TAAATTACATAAAA-AGCC-----------------TAAA-GTTGTTTTGTA-----CACCTTGTGAAGCTCGTGA--------------------AA--AATAAT--------------AAAAAGTCAGC-TGAA----AAATAA---AACA-AACCG----AAA--AAAAAA--CATA-----A------AAAA--TTGACAAAAATAAACTTAATCACA--------------------------------------------CACACAAGCGGGGG-ACT--ATATACACATTAT--AAAA---AACATAT
droBia1 scf7180000302113:1463482-1463722 - AATAATACTACTCCA---------------AAAA--CAAACCGAGC--AA-------A---CCGAAC----AACCG--AAGTTCGAAAGGTAAAG-GATCAG--------------------------------------------------------------------------------------------------------------------------------GC-AAAGTAAA-TAAATTACATAAAA-AGCC-----------------CCAA-GTTTTTTTATGC---CCACCTAGTGAAGCTCGTGA--------------------AAA-AAT--T-A----AA------AAAAAACCAGCAAA-----AATATAA---AAC-------------------AAAAATACA----------A-AAAA--TTGACAAAAATAAACTTAATCACT--------------------------------------------CACACAAGCGGGCGACGT--ATAC--GTATTTT--A-AA---AACACAT
droTak1 scf7180000415765:348509-348770 + AATA--ACTACTCAA---------------AGAAACCAAACCCACT--AAA----------CTGAAC----AACCA--AAGTTCAAAAGGTAAAA-GATCAAC-----------------------------------------------------------------GAAGT--AAA--------------------------------------------------A-CCAAAAGTTAA-TAAATTACATAAAA-AGCC-----------------TCAA-GTTTTTTTATAC---CCACCTAGTGAAGCTCGTGA--------------------AA--AATAATA----AAA------AAAAAGTCAGCAAAAAAAG-AAATAA---AAC-------------------AAAAATACA----------AAAAGA--TTGACAAAAATAAACTTAATCACA--------------------------------------------CACACAAGCGGGGGACCT--ATATACATATTAT--AAAA---AACATAT
droEle1 scf7180000491280:2212110-2212374 + AAAA--GCTACTCAA---------------AAAA-CC-AAT-----GAAAA--A-GCG---CTGAAC----AAGTA--ACGTTCAAAAGGTAAAA-GATCAAC---AAC--------------A---------------------------------------------A-----------AA-----------------TAGAAACCCTTTTA-------------AA-ACAAAAGTTAA-TAAATTACATAAAA-ATCC-----------------TAAA-GTTTTTTTGTA-------CCTAGTGAACCTCGTGA--------------------AA--AATAAT--------------AAAAAGTCAGCAAA------AAATAA---AAC-AA-GA----------AAAAAA--CAAA-----A------ATAA--TTGTCAAAAATAAACTTAATCACA------------------------------------------CACACACAAGCGGTGG-TCT--ATAT----ATTATAGAAAA---AACATAT
droRho1 scf7180000779336:36627-36890 - TACA--ACTACTCAA---------------AAAA-CC-AAT-----GAAAA--A-GCG---CTGAAC----AAGTA--ACGTTCAAAAGGTAAAA-GATCAAC--------------------A--------------------------------------------AA-----------AA-----------------TAGAAACCC---------------CTT--AA-AAAAGTTAA-TAAATTACATAAAA-AGCC-----------------TAAA-GTTTTTTTATA-------CCTAGTGAACCTCGTGA--------------------AA--AATAAT--------------AAAAAGTCAGCAAAAA--AAAAGTAA---AAC-AA-GCA----AAAAAGAAAAA--CAAA-----A------AAAA--TTGACAAAAATAAACTTAATCACA--------------------------------------------CACACAAGCGGAGG-ACT--ATAT----ATTA---AAAA---AACATAT
droFic1 scf7180000454073:3415246-3415486 - A-TA--ACTATTAAA---------------AA---CAAAAA-------AAAATA-ACG---CTGAAC----AAGTA--AAGTTTCAAAGGTAAAA-GATCAGC-----------------------------------------------------------------CCAAT--A----------------------------------------------------A-T-AAGAGTAAATTAAATTACATAAAA-AGCC-----------------TAAA-GTTTTTTTGTA-----CACCTAGTGAAACTCGTGA--------------------A---AATAAT--------------AAAAAGTCACCAAA------AAATAA---AAC-------------------------AAA-----AAGTAA-AAAA--TTGACGAAAATAAACTTAATCACA--------------------------------------------CACACAAGCGGGGG-ACT--ATAAGTATATTA---AAAA---AACATAT
droKik1 scf7180000302261:372278-372540 + AAA--------------------------------------------------------------AC----AAGTAACAAGTTCAAAAGGTAAAACGATTGTCATCAT----C-------------------------------------------------------GCA----------------------------------ACAC---------------GAA-A-GT-TAATTTAA-TAAATTACATAAAAACGTCAAGTG------------TAGA-GTTT--TTGTAT-----TTGT-GTGATCGTGTTCA--------------------AA--AAAATT-AAGAAG---------AA---------AA-----AAAAAG---AATA-AATAGTCAAAAAA--ACAAAAATACGACACAAA-CAA-CAAA--TTGACAAAAATAAACTTTATTATGCGTGGAA-----------------CAC------ACAC----ACTCACTTGGTCAGGCG-AAT--ATAT--AA--TTT--AAAA---CACATAT
droAna3 scaffold_13340:20913961-20914322 + GCTT--TAAACTGT----------------------------------AAA--T-ACG---C-GAAA----AAGCA--ACGTTCAAAAGGTAAAA-GATCAAC---TT----AA---AAACACAAAAGCGAG---AAAAAGTC-CAAATTTTATTTAAAAAAAA-----AAGTAA------AATCAAAA--AAACAAAAATAGAATTGATTTCAAAAGTAACGCCACCAAA-AAAAGTTAA-TAAATTACATAAAA-TGTCAAGAGGCGCAAAATGCGTTCA-GTTTTT-TGTATT---TT-CGAGT----GTCGTGA--------------------AAAAAATAAT--------------AATAAATAA----------AATATAA---TAC-AA---------AAAAATAAAA--CAAA-----A------AAAA--TTGACAAAAATAAACTTTATTATGCGTGTTT-----------------CAC------ACACAC--ACACACACATGCAGTGG-AAT--ATAT--A-ATTTT--AAAAAAGAACATAT
droBip1 scf7180000396413:1490721-1491047 - TCTA--------------------------AAAA--AATAT-----AGAAA--T-CCG---C-GAAC----AAACA--ACGTTCAAAAGGTAAAA-GATCAAC---TTCTAAAA---AATCACAA---------AAAAAAGTC-CAAATTTTAT--------------------------------AAA--AAACAAAAATAGAATTGAATT-AAAAGTAACGCCAG--AAT-AAAGTTAA-TAAATTACATAAAA-TGTCAAGAGGCGCGAAATGCGTTCA-GTTTC-------------------------AGTGA--------------------AAAAAATTATA----AG---------AAAATAATAATGAA--TAAAAT-------------TTTAAT-----AAAAAA--CAAA-----AA-----AAAAATTAGACAAAAATAAACTTTATTATGCGTGTAT-----------------CAC------ACACAC--TCACACACATGCAGTGG-AAT--ATAT--A-ATTTT--AAAG---AACATAT
dp5 2:1032345-1032674 + ACGG--AACGG----GAGAAATGCAAAGTT-------AATT-------AAA--G-GAAATTTCGAGAGAGAGAGTT--TCGATC-AAAGGTAA-A-GATCCGC---TA------GGA----------------------------------------------------------AATTTC--------------------------------AAC--TG-------GCGA-AAAAGTTAA-TAAATTACATAAAA-TATCAAGAG---C-AAAGGCGTTCCAATT---TTGTATTTT-GTGAT-GTGAATATCGTGGAATAAAACAAATTCTAAAAC----------CA---AG-AAACAA--------------------AAATTA---AACA-AATTGCCATAG--AGAAAAA--CAAA-----AA-----AAAA--ATGACAAAAATAAACTTTATTATGCGTGGAATGACACA------CAAACAC------ACACACAAACACACTCGTGCAG----ATAATATAT--AG--CTT--AAAG---TATATAT
droPer2 scaffold_7:3818580-3818915 + ACGG--AACGG----GAGAAATGCAAAGTT-------AATT-------AAA--G-GAAATTTCGAGATAGAGAGTT--TCGATC-AAAGGTAA-A-GATCCGC---TA------GGA----------------------------------------------------------AATTTC--------------------------------AAC--TG-------GCGA-AAAAGTTAA-TAAATTACATAAAA-TATCAAGAG---C-AAAGGCGTTCCAATT---TTGTATTTT-GTGAT-GTGAATATCGTGGAATAAAACAAATTCTAAAAC----------CA---AG-AAACAA--------------------AAATTA---AACA-AATTGCCATAG--AGAAAAA--CAAA-----AA-----AAAA--ATGACAAAAATAAACTTTATTATGCGTGGAATGACACA------CAAACACACACACACACACAAACACACTCGTGCAG----ATAATATAT--AG--CTT--AAAG---TATATAA
droWil2 scf2_1100000004943:5344608-5344919 + AAAA--GAAAG----AAAGAGTAAATAAAT-------AACC-------A----------------------------------------------------A---------------AAACAAAAAAGTGCTAAAGAAATGTTGCAAATT-T----AGAAAAAAATTAAA-----------AAACGAAACCAAACAAAAAAGGTAAAGATTT-C-------------CA-GCAAAATCCAA-AAAATAACATAAAA-A----------------------AA-GTCTTTGTGAAATT--TAAAA-ATGTTTTTCGAGAAAAAACAAAAATTCT------------AAT--------------GAGAATTTTACACAAAATT-AAAT---------A---TT----A------AAAATATACT----------AAACGC--TTGACGAAAATAAACTTTATTATGCGTGGAATGACAACGACCAGCAAATCT------C-------------------------TAT--ATACACACACTTT--TAAA---TGTATAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AATA--ACCACTCTA---------------AAG--CCAAAT-------AAA--A-GCG---CCGAAC----AACC---AAGTTCAAAAGGTAAAA-GATCAAC--------------------A--------------------------------------------GA----------------------------------------------------------A-GC-GAAGTTAA-TAAATTACATAAAA-AGCC-----------------TGCA-GTTTTTTTATA-----CACCT-GTGAACCTCGTGA--------------------AAA-AATAAT--------------AAAAAGTCAGCCTGAA--GAAAATAAAA--GC-AA-GCT----AAA-----AAAAACACA----------A--AAG--TTGACAAAAATAAACTTAATCACA--------------------------------------------CACACACGCGG-GA-CCT--ATATGCAAATTAT--AAAA---AACATATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................ATA-----CACCT-GTGAACCTCGT.................................................................................................................................................................................................................................................1911.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................AT--------------AAAAAGTCAGCCTGAA--GAAA.............................................................................................................................................................................2211.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................T--------------AAAAAGTCAGCCTGAA--GAAAATAAA........................................................................................................................................................................2611.00100000000010000000
...................................................................................................................................................................................................................................................AAATTACATAAAA-AGCC-----------------TGCA-GTT...............................................................................................................................................................................................................................................................................2411.00100010000000000000
.........ACTCTA---------------AAG--CCAAAT-------AAA--A-GCG---CC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
................................................................................GTTCAAAAGGTAAAA-GAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.33110000000000000000
droSec2
AATA--ACCACTCTA---------------AAG--CCAAAT-------AAA--A-GCG---CTGAAC----AACC---AAGTTCAAAAGGTAAAA-GATCAAC--------------------A--------------------------------------------GA----------------------------------------------------------A-GC-GAAGTTAA-TAAATTACATAAAA-AGCC-----------------TGCA-GTTTTTTTATA-----CACCT-GTGAACCTCGTGA--------------------AAA-AATAAT--------------AAAAAGTCAGCCTGAA--GAAAATAAAA--GC-AA-GCT----AAA------AAAATACT----------A--AAG--TTGACAAAAATAAACTTAATCACA--------------------------------------------CACACACGCGGGGG-CCT--ATATGCAAATTAT--AAAA---AACATATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................TTCAAAAGGTAAAA-GATCAAC--------------------A--------------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
....................................................................................AAAAGGTAAAA-GATCAAC--------------------A--------------------------------------------G....................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACA--------------------------------------------CACACACGCGGGGG-TT................................2211.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACA--------------------------------------------CACACACGCGGG.....................................1811.0010010
..........................................................................................................................................................................................................................................................................................................................................................AT--------------AAAAAGTCAGCCTGAA--GA...............................................................................................................................................................................2011.0010100
..................................................................................TCAAAAGGTAAAA-GATCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
dm3
AATA--ACCACTCAA---------------AAG--CCAAAT-------AAA--A-GCG---GTGAAC----AACT---AAGTTCAAAAGGTAAAA-GATCAAC--------------------A--------------------------------------------GA----------------------------------------------------------A-GC-GAAATTAA-TAAATTACATAAAA-AGCC-----------------TGCA-GTTTTTTTATA-----CACCT-GTGAACCTCGTGA--------------------AAA-AATAAT--------------AAAAAGTCAGCCTGAA--GAAAATAA---AACAAA-GCT----AAAAA-AAAAAAATACA----------A--AAG--TTGACAAAAATAAACTTAATCACA--------------------------------------------CACACACGCGGGGG-CCT--ATATGCAAATTAT--AAAA---AACATATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................TTATA-----CACCT-GTGAACCT....................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000001310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................AAAA-GATCAAC--------------------A--------------------------------------------GA----------------------------------------------------------A-GC-GAAA................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............AA---------------AAG--CCAAAT-------AAA--A-GCG---GTGAAC----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCACA--------------------------------------------CACACACGCGGGGG-C.................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................T-------AAA--A-GCG---GTGAAC----AACT---AAGTTCAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................A--A-GCG---GTGAAC----AACT---AAGTTCAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................T--------------AAAAAGTCAGCCTGAA--GAAAATAA---AAA...................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................ATCAAC--------------------A--------------------------------------------GA----------------------------------------------------------A-GC-GAAATTAA-T..........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................................................................................................................................................................................................................................ATA-----CACCT-GTGAACCTCGTGA--------------------...........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.........ACTCAA---------------AAG--CCAAAT-------AAA--A-GCG---GT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................................AA--A-GCG---GTGAAC----AACT---AA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................C----AACT---AAGTTCAAAAGGTAAAA-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................TCAGCCTGAA--GAAAATAA---AACAAA-GC.............................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TTTTATA-----CACCT-GTGAACC.....................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................AAAT-------AAA--A-GCG---GTGAAC----AACT---AA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................A--A-GCG---GTGAAC----AACT---AAGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................T-------AAA--A-GCG---GTGAAC----AACT---AAGTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAATCACA--------------------------------------------CACACACGCGG......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................AAA-GATCAAC--------------------A--------------------------------------------GA----------------------------------------------------------A-GC-GAAAT...............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................A-GCG---GTGAAC----AACT---AAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACA--------------------------------------------CACACACGCGGGGG-CCT--.............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................AAT--------------AAAAAGTCAGCCTGAA--GA...............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGG-CCT--ATATGCAAATT..................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CTCAA---------------AAG--CCAAAT-------AAA--A-GCG---................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AAG--CCAAAT-------AAA--A-GCG---GT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACA--------------------------------------------CACACACGCGGGGG-C.................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AAG--CCAAAT-------AAA--A-GCG---GTGAAC----A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................A-AATAAT--------------AAAAAGTCAGCCTG.....................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................CAAAT-------AAA--A-GCG---GTGAAC----AAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................CCAAAT-------AAA--A-GCG---GTGAAC----AACT---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................T-GTGAACCTCGTGA--------------------AAA-AATA...................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AAA--A-GCG---GTGAAC----AACT---AAGTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............A---------------AAG--CCAAAT-------AAA--A-GCG---GTGAAC----AAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACGCGGGGG-CCT--ATATGC.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CAAAT-------AAA--A-GCG---GTGAAC----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA--------------------------------------------CACACACGCGGGGG-CCT--A............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................GTGAAC----AACT---AAGTTCAAAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCACA--------------------------------------------CACACACGCGGGGG-C.................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACA--------------------------------------------CACACACGCGGGGG-CT................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
...............................................................................AGTTCAAAAGGTAAAA-GA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................T-------AAA--A-GCG---GTGAAC----AACT---AA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCACA--------------------------------------------CACACACGCGGGGG-G.................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................CAAA-GCT----AAAAA-AAAAAAA...........................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AATA--ACCACTCAA---------------AAG--CCAAAT-------AAA--A-GCG---CTGAAC----AACC---AAGTTCAAAAGGTAAAA-GATCAAC--------------------A--------------------------------------------GA----------------------------------------------------------A-GC-GAAGTTAA-CAAATTACATAAAA-AGTC-----------------TGCA-GTTTTTTTATA-----CACCT-GTGAATCTCGTGA--------------------AAA-AATAAT--------------AAAAAGTCAGCCTAAA--GAATATAAAAAT-CCAA-GCG----AAA-----AAAAATACA----------A--AAG--TTGACAAAAATAAATTTAATCACA--------------------------------------------CACACAAGTGGGGG-CCT--ATATGCAAATTAT--AAAA---AACATATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................TTTTTTTATA-----CACCT-GTGAATCTCG..................................................................................................................................................................................................................................................25116.001600000016
...............................AG--CCAAAT-------AAA--A-GCG---CTGAAC----AACC---AAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
........................................................................................................................................................................................................................................................................................................................................................TAAT--------------AAAAAGTCAGCCTAAA--.................................................................................................................................................................................2011.0010000010
............................................................................................................................................................................................................................................................................................................ACCT-GTGAATCTCGTGA--------------------AAA-A......................................................................................................................................................................................................................2111.0010000010
....................................CAAAT-------AAA--A-GCG---CTGAAC----AA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
............................................................................................................................................................................................................................................................................................TTTTTTTATA-----CACCT-GTGAATCTCT..................................................................................................................................................................................................................................................2511.0010000001
droYak3
AATA--ACCACTCAA---------------AAG--CCAAAT-------AAA--A-GCG---CTGAAC-------C---AAGTTCAAAAGGTAAAA-GATCAAC--------------------A--------------------------------------------GA----------------------------------------------------------A-GC-GAAGTTAA-TAAATTACATAAAA-AGCC-----------------TGCA-GTTTTTTTATA-----CACCT-GTGAACCTCGTGAAAATATAA--------------A-AATAAT--------------AAAAAGTCAGCCTCAA--GAATATAA---AATCAA-GCT----AAAA--AAAAAAATACA----------A--AAG--TTGACAAAAATAAACTTAATCACA--------------------------------------------CACACAAGTGGGGG-CCT--ATATGCAAATTAT--AAAA---AACATATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................GTTCAAAAGGTAAAA-GAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000
.....................................AAAT-------AAA--A-GCG---CTGAAC-------C---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000
...........................................................................................AAAA-GATCAAC--------------------A--------------------------------------------GA----------------------------------------------------------A-GC-GAAGTT..............................................................................................................................................................................................................................................................................................................................2311.00100000010000
.......................................AT-------AAA--A-GCG---CTGAAC-------C---AAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...................................................................................................................................................................................................................................................AAATTACATAAAA-AGCC-----------------TGCA-..................................................................................................................................................................................................................................................................................2111.00101000000000
.................................................................................................................................................................................................................................................................................................TTATA-----CACCT-GTGAACCTCGT.................................................................................................................................................................................................................................................2111.00100000010000
.........................................................................................GTAAAA-GATCAAC--------------------A--------------------------------------------GA----------------------------------------------------------A-GC-....................................................................................................................................................................................................................................................................................................................................1911.00100000010000
droEug1
ATTA--ATCACTCAA---------------AAAA-GC-AGT-------AAA--ACGCG---CTGAAC----AACCG--AAGTTCAAAAGGTAAAG-GATCAAC---G----------------A--------------------------------------------GA----------------------------------------------------------A-GC-AAAGTTAA-TAAATTACATAAAA-AGCC-----------------TAAA-GTTGTTTTGTA-----CACCTTGTGAAGCTCGTGA--------------------AA--AATAAT--------------AAAAAGTCAGC-TGAA----AAATAA---AACA-AACCG----AAA--AAAAAA--CATA-----A------AAAA--TTGACAAAAATAAACTTAATCACA--------------------------------------------CACACAAGCGGGGG-ACT--ATATACACATTAT--AAAA---AACATATSizeHit CountTotal NormTotal
No Reads
droBia1
AATAATACTACTCCA---------------AAAA--CAAACCGAGC--AA-------A---CCGAAC----AACCG--AAGTTCGAAAGGTAAAG-GATCAG--------------------------------------------------------------------------------------------------------------------------------GC-AAAGTAAA-TAAATTACATAAAA-AGCC-----------------CCAA-GTTTTTTTATGC---CCACCTAGTGAAGCTCGTGA--------------------AAA-AAT--T-A----AA------AAAAAACCAGCAAA-----AATATAA---AAC-------------------AAAAATACA----------A-AAAA--TTGACAAAAATAAACTTAATCACT--------------------------------------------CACACAAGCGGGCGACGT--ATAC--GTATTTT--A-AA---AACACATSizeHit CountTotal NormTotal
No Reads
droTak1
AATA--ACTACTCAA---------------AGAAACCAAACCCACT--AAA----------CTGAAC----AACCA--AAGTTCAAAAGGTAAAA-GATCAAC-----------------------------------------------------------------GAAGT--AAA--------------------------------------------------A-CCAAAAGTTAA-TAAATTACATAAAA-AGCC-----------------TCAA-GTTTTTTTATAC---CCACCTAGTGAAGCTCGTGA--------------------AA--AATAATA----AAA------AAAAAGTCAGCAAAAAAAG-AAATAA---AAC-------------------AAAAATACA----------AAAAGA--TTGACAAAAATAAACTTAATCACA--------------------------------------------CACACAAGCGGGGGACCT--ATATACATATTAT--AAAA---AACATATSizeHit CountTotal NormTotal
No Reads
droEle1
AAAA--GCTACTCAA---------------AAAA-CC-AAT-----GAAAA--A-GCG---CTGAAC----AAGTA--ACGTTCAAAAGGTAAAA-GATCAAC---AAC--------------A---------------------------------------------A-----------AA-----------------TAGAAACCCTTTTA-------------AA-ACAAAAGTTAA-TAAATTACATAAAA-ATCC-----------------TAAA-GTTTTTTTGTA-------CCTAGTGAACCTCGTGA--------------------AA--AATAAT--------------AAAAAGTCAGCAAA------AAATAA---AAC-AA-GA----------AAAAAA--CAAA-----A------ATAA--TTGTCAAAAATAAACTTAATCACA------------------------------------------CACACACAAGCGGTGG-TCT--ATAT----ATTATAGAAAA---AACATATSizeHit CountTotal NormTotal
No Reads
droRho1
TACA--ACTACTCAA---------------AAAA-CC-AAT-----GAAAA--A-GCG---CTGAAC----AAGTA--ACGTTCAAAAGGTAAAA-GATCAAC--------------------A--------------------------------------------AA-----------AA-----------------TAGAAACCC---------------CTT--AA-AAAAGTTAA-TAAATTACATAAAA-AGCC-----------------TAAA-GTTTTTTTATA-------CCTAGTGAACCTCGTGA--------------------AA--AATAAT--------------AAAAAGTCAGCAAAAA--AAAAGTAA---AAC-AA-GCA----AAAAAGAAAAA--CAAA-----A------AAAA--TTGACAAAAATAAACTTAATCACA--------------------------------------------CACACAAGCGGAGG-ACT--ATAT----ATTA---AAAA---AACATATSizeHit CountTotal NormTotal
No Reads
droFic1
A-TA--ACTATTAAA---------------AA---CAAAAA-------AAAATA-ACG---CTGAAC----AAGTA--AAGTTTCAAAGGTAAAA-GATCAGC-----------------------------------------------------------------CCAAT--A----------------------------------------------------A-T-AAGAGTAAATTAAATTACATAAAA-AGCC-----------------TAAA-GTTTTTTTGTA-----CACCTAGTGAAACTCGTGA--------------------A---AATAAT--------------AAAAAGTCACCAAA------AAATAA---AAC-------------------------AAA-----AAGTAA-AAAA--TTGACGAAAATAAACTTAATCACA--------------------------------------------CACACAAGCGGGGG-ACT--ATAAGTATATTA---AAAA---AACATATSizeHit CountTotal NormTotal
No Reads
droKik1
AAA--------------------------------------------------------------AC----AAGTAACAAGTTCAAAAGGTAAAACGATTGTCATCAT----C-------------------------------------------------------GCA----------------------------------ACAC---------------GAA-A-GT-TAATTTAA-TAAATTACATAAAAACGTCAAGTG------------TAGA-GTTT--TTGTAT-----TTGT-GTGATCGTGTTCA--------------------AA--AAAATT-AAGAAG---------AA---------AA-----AAAAAG---AATA-AATAGTCAAAAAA--ACAAAAATACGACACAAA-CAA-CAAA--TTGACAAAAATAAACTTTATTATGCGTGGAA-----------------CAC------ACAC----ACTCACTTGGTCAGGCG-AAT--ATAT--AA--TTT--AAAA---CACATATSizeHit CountTotal NormTotal
No Reads
droAna3
GCTT--TAAACTGT----------------------------------AAA--T-ACG---C-GAAA----AAGCA--ACGTTCAAAAGGTAAAA-GATCAAC---TT----AA---AAACACAAAAGCGAG---AAAAAGTC-CAAATTTTATTTAAAAAAAA-----AAGTAA------AATCAAAA--AAACAAAAATAGAATTGATTTCAAAAGTAACGCCACCAAA-AAAAGTTAA-TAAATTACATAAAA-TGTCAAGAGGCGCAAAATGCGTTCA-GTTTTT-TGTATT---TT-CGAGT----GTCGTGA--------------------AAAAAATAAT--------------AATAAATAA----------AATATAA---TAC-AA---------AAAAATAAAA--CAAA-----A------AAAA--TTGACAAAAATAAACTTTATTATGCGTGTTT-----------------CAC------ACACAC--ACACACACATGCAGTGG-AAT--ATAT--A-ATTTT--AAAAAAGAACATATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................AAA-TGTCAAGAGGCGCAAAATGC........................................................................................................................................................................................................................................................................................2311.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................A---------AAAAATAAAA--CAAA-----A------AAAA--.....................................................................................................................20200.051010000
droBip1
TCTA--------------------------AAAA--AATAT-----AGAAA--T-CCG---C-GAAC----AAACA--ACGTTCAAAAGGTAAAA-GATCAAC---TTCTAAAA---AATCACAA---------AAAAAAGTC-CAAATTTTAT--------------------------------AAA--AAACAAAAATAGAATTGAATT-AAAAGTAACGCCAG--AAT-AAAGTTAA-TAAATTACATAAAA-TGTCAAGAGGCGCGAAATGCGTTCA-GTTTC-------------------------AGTGA--------------------AAAAAATTATA----AG---------AAAATAATAATGAA--TAAAAT-------------TTTAAT-----AAAAAA--CAAA-----AA-----AAAAATTAGACAAAAATAAACTTTATTATGCGTGTAT-----------------CAC------ACACAC--TCACACACATGCAGTGG-AAT--ATAT--A-ATTTT--AAAG---AACATATSizeHit CountTotal NormTotal
No Reads
dp5
ACGG--AACGG----GAGAAATGCAAAGTT-------AATT-------AAA--G-GAAATTTCGAGAGAGAGAGTT--TCGATC-AAAGGTAA-A-GATCCGC---TA------GGA----------------------------------------------------------AATTTC--------------------------------AAC--TG-------GCGA-AAAAGTTAA-TAAATTACATAAAA-TATCAAGAG---C-AAAGGCGTTCCAATT---TTGTATTTT-GTGAT-GTGAATATCGTGGAATAAAACAAATTCTAAAAC----------CA---AG-AAACAA--------------------AAATTA---AACA-AATTGCCATAG--AGAAAAA--CAAA-----AA-----AAAA--ATGACAAAAATAAACTTTATTATGCGTGGAATGACACA------CAAACAC------ACACACAAACACACTCGTGCAG----ATAATATAT--AG--CTT--AAAG---TATATATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................GTT-------AATT-------AAA--G-GAAATTTCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACACACTCGTGCAG----ATAATATAT--A......................2811.0010100000000
...............................................................................................................................................................................................................................................................................................................................ATAAAACAAATTCTAAAAC----------CA---AG-AA.......................................................................................................................................................................................................2511.0010010000000
..GG--AACGG----GAGAAATGCAAAGTT-------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000001000
.......................................................GAAATTTCGAGAGAGAGAGTT--...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
droPer2
ACGG--AACGG----GAGAAATGCAAAGTT-------AATT-------AAA--G-GAAATTTCGAGATAGAGAGTT--TCGATC-AAAGGTAA-A-GATCCGC---TA------GGA----------------------------------------------------------AATTTC--------------------------------AAC--TG-------GCGA-AAAAGTTAA-TAAATTACATAAAA-TATCAAGAG---C-AAAGGCGTTCCAATT---TTGTATTTT-GTGAT-GTGAATATCGTGGAATAAAACAAATTCTAAAAC----------CA---AG-AAACAA--------------------AAATTA---AACA-AATTGCCATAG--AGAAAAA--CAAA-----AA-----AAAA--ATGACAAAAATAAACTTTATTATGCGTGGAATGACACA------CAAACACACACACACACACAAACACACTCGTGCAG----ATAATATAT--AG--CTT--AAAG---TATATAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................................................GTATTTT-GTGAT-GTGAATATCGTGGA..............................................................................................................................................................................................................................................2611.001001000
...............................................................................................................................................................................................................................................................................................................................................................................................................TGCCATAG--AGAAAAA--CAAA-----A.................................................................................................................................2011.001001000
droWil2
AAAA--GAAAG----AAAGAGTAAATAAAT-------AACC-------A----------------------------------------------------A---------------AAACAAAAAAGTGCTAAAGAAATGTTGCAAATT-T----AGAAAAAAATTAAA-----------AAACGAAACCAAACAAAAAAGGTAAAGATTT-C-------------CA-GCAAAATCCAA-AAAATAACATAAAA-A----------------------AA-GTCTTTGTGAAATT--TAAAA-ATGTTTTTCGAGAAAAAACAAAAATTCT------------AAT--------------GAGAATTTTACACAAAATT-AAAT---------A---TT----A------AAAATATACT----------AAACGC--TTGACGAAAATAAACTTTATTATGCGTGGAATGACAACGACCAGCAAATCT------C-------------------------TAT--ATACACACACTTT--TAAA---TGTATATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................AGTGCTAAAGAAATGTTGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCAAATCT------C-------------------------TAT--ATACA........................2111.00101000
..........................................................................................................................................ATGTTGCAAATT-T----AGAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
......................................................................................................................................................................................................................................................................................................................TTTCGAGAAAAAACAAAAATT..................................................................................................................................................................................................................................2111.00100010
...............................................................................................................................GTGCTAAAGAAATGTTGCAAATT-T----AGA..............................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010

Generated: 05/19/2015 at 05:37 AM