ID:

dsi_27861

 Coordinate:

2l:13360677-13360883 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.8 -17.7 -17.6

Flybase annnotation

three_prime_UTR [2l_13359964_13360628_-]; CDS [2l_13360629_13360676_-]; CDS [2l_13360884_13361035_-]; exon [2l_13360884_13361035_-]; exon [2l_13359964_13360676_-]; intron [2l_13360677_13360883_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGGTGATCCTGCTGCCGGGCACCGCTTTCGAGGCCAGCCAGATCCTTCAGGTAGAGCAGCCGGTGCTGGAGTAACCCCATCTAACCCATCCTAACAACCACACCTGTTCCCCCACCCAGCAATTCAAGTGTCCCTATACCATAGACCCATCCAGCTGCAGGAAGAAAAACTATCTAACCAACTTCTTACAAAACGACTAGAGTCGATCAAGCCACCTCCATATTCCAATTCAAATTCTTTACTTTGCATGCTATCAGATTATCATCGAGGGCAATGTTAGTCGCAAGACCAAGCGGAATCGCTAGCG
*********************************************************....(((((((((.............................((((.((..................)).))))..((((...)))).....))))))((.((((((.................)))))).))...((((....)))).....))).................***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 M024
male body		 M053
female body
 O001
Testis
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
...................................................................................................................................................................................................................................................................TATCATCGAGGGCAATGTTAGTCGCAA..................... 27 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CCACCTCCATATTCCAATT............................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................CATGCTATCAGATTATCATCGAGGGC................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................CAGATTATCATCGAGGGCAATG............................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................ATCATCGAGGGCAATGTTAGT.......................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................ATTATCATCGAGGGCAATGTTAGTAGT....................... 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................CCAGATCCTTCAGGTAGAGCA......................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................AGAGCAGCCGGTGCTGGATTT.......................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................CGCAAGACCAAGCGGAATCGCTAGC. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................TCGCAAGACCAAGCGGAA......... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................GATTATCATCGAGGGCAATGTT............................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................CAGCCAGATCCTTCAGGTA.............................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................ATTATCATCGAGGGCAATGTTAGTAGG....................... 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................AGCCGGTGCTGGAGTAACCCCATC.................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................CCAGTCAGCTCCTTCCGGT............................................................................................................................................................................................................................................................... 19 3 13 0.23 3 0 0 0 0 0 0 0 0 0 3 0 0 0
..........................................................................................................................................................................................................................................................................................GCAAGACCAACCGGA.......... 15 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................CAGAAACTTCACGTAGAGCA......................................................................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................................................................................................................TGTTAGTCGCAAGGCGA................ 17 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................CGAGTCGATCAAGCCAC............................................................................................ 17 1 17 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................................................................GGGCAAAGTTTGTCGCA...................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GCCACTAGGACGACGGCCCGTGGCGAAAGCTCCGGTCGGTCTAGGAAGTCCATCTCGTCGGCCACGACCTCATTGGGGTAGATTGGGTAGGATTGTTGGTGTGGACAAGGGGGTGGGTCGTTAAGTTCACAGGGATATGGTATCTGGGTAGGTCGACGTCCTTCTTTTTGATAGATTGGTTGAAGAATGTTTTGCTGATCTCAGCTAGTTCGGTGGAGGTATAAGGTTAAGTTTAAGAAATGAAACGTACGATAGTCTAATAGTAGCTCCCGTTACAATCAGCGTTCTGGTTCGCCTTAGCGATCGC
*****************************************************************************....(((((((((.............................((((.((..................)).))))..((((...)))).....))))))((.((((((.................)))))).))...((((....)))).....))).................********************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 M053
female body
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
..............................................................................................................................................................................................................AGTTCGGTGGAGGAATCA................................................................................... 18 2 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................CGGTGGAGGTATAAGGTTAAGT........................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...............................TCGGTCGGTCTAGGAAGTCCAT.............................................................................................................................................................................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................TAGCTCCCGTTACAATCAGCG....................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................GATAGATTGGTTGAAGAATGT..................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................TGGGTCGGTCTAGGAAGTCCAT.............................................................................................................................................................................................................................................................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................CCGGTCAGTCGAGGAAGGCCA............................................................................................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................TTTTGGGGTAGATTGGGTAGGAT...................................................................................................................................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................AACGTACGATAGTCTAATAGT........................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.................................GGTCAGTCTAGGAAGGCCA............................................................................................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GAGGTATAAGGTTAAGTTTAA....................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................................................................................GGTGGGACGTTAAATTGACA................................................................................................................................................................................ 20 3 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GTGGAGGTATAAGGTTAAGTTT......................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.................................GGTCAGTCGAGGAAGGCCA............................................................................................................................................................................................................................................................... 19 3 13 0.23 3 3 0 0 0 0 0 0 0 0
.................................GGTCGGTCGAGGAAGGCCA............................................................................................................................................................................................................................................................... 19 2 6 0.17 1 1 0 0 0 0 0 0 0 0
.............................CTCCGGTCAGTCGAGGAA.................................................................................................................................................................................................................................................................... 18 2 6 0.17 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................GAATCGTGCGATAGTCT................................................. 17 2 9 0.11 1 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................................................................................CTGATTCGCCTTGGCGAAC.. 19 3 9 0.11 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................CAATCAGCGGCCTGCTTCG............. 19 3 10 0.10 1 0 0 0 0 0 0 0 1 0
.............................CTACGTTCGGTCTAGGTAG................................................................................................................................................................................................................................................................... 19 3 20 0.10 2 0 1 0 0 1 0 0 0 0
......................................................................................................................................................................................................................GGAGGAGTAGGGTTAAGTTT......................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 1
................................................................................................................................ACAGGGATCTGGTAGCTCGG............................................................................................................................................................... 20 3 14 0.07 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................CTCAGCTAGTTCGGT............................................................................................. 15 0 15 0.07 1 1 0 0 0 0 0 0 0 0
..................................GTCGGTCGAGGCAGTCC................................................................................................................................................................................................................................................................ 17 2 19 0.05 1 0 0 0 1 0 0 0 0 0
........................................................................................AGGAATGTTGGGGTGG........................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................................................................GAATCGTGCGATAGTC.................................................. 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0
...................................................................................................................GGTCCTTAAGGTCAGAGGG............................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0
........................................................................TTTGGGTAGGTTGGGGAGGA....................................................................................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................ACGATTATCTAATAGTAGTT....................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................TATGGCATCTTTGTAGGTC......................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................AGATTGGTTCAAGCACGTT.................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1
.........................AAAGCTACGGTCGGT........................................................................................................................................................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:13360627-13360933 - dsi_27861 CGGTGATCCTGCTGCCGGGCACCGCTTTCGAGGCCAGCCAGATCCTTCAGGTAGAG--C-----AGC---CGGTG-------------CTG-GA----GTA--------AC------CCC------ATCTAACCCATCCTAACAACCACAC-------CTGTT---CCCC--C------ACCCAGCAATTCAAGTGTCCCTATACCATAGACCCATCCAGCTGCAGG--------------AAG---------AAAAACTATCT------AACCAACTT-------------C-TTACAAAACGACTAGAGTCG---AT--------C------AAGCCACCTCCA---TATTCCAATTCAAAT-TCTTTACTTTGCATGCTA------TCAGATTATCATCGAGGGCAATGTTAGTCGCAAGACCAAGCGGAATCGCTAGCG
droSec2 scaffold_3:40820-41126 - CGGTGATCCTGCTGCCGGGCACCGCTTTCGAGGCCAGCCAGATCCTTCAGGTAGAG--C-----AGC---CGGTG-------------CTG-GA----GTA--------AC------CCC------ATCTAACCCATCCTAACAACCACAC-------CTGTT---CCCC--C------ACCCAGCAATTCAAGTGTCCCTATACCATAGACCCATCCAGCTGCAGG--------------AAG---------AAAAACTATCT------AACCAACTT-------------C-TTACAAAACGACTAGAGTCG---AT--------C------AAGCCACCTCCA---TATTCCAATTCAAAT-TCTTTACTTTGCATGCTA------TCAGATTATCATCGAGGGCAATGTTAGTCGCAAGACCAAGCGGAATCGCTAGCG
dm3 chr2L:13774998-13775304 - CGGTGATCCTGCTGCCGGGCACCGCTTTCGAGGCCAGCCAGATCCTTCAGGTAGAG--C-----AGC---CGGTG-------------CTG-GA----GTA--------AC------CCC------ATCTAACCCATCCTAACAACCACAC-------CTGTT---CCCA--C------ACCCAGCAATTCAAGTGTCCCTATACCATAGACCCATCCAGCTGCAGG--------------AAG---------AAAAACTATCT------AACCAACTT-------------C-TTACAATACGACTAGAGTCG---AT--------C------AAGACACCACCA---TATTCCAATTCAAAT-TCTTTACTTTGCATGCTA------TCAGATTATCATCGAGGGCAATGTGAGTCGCAAGACCAAGCGGAATCGCTAGCG
droEre2 scaffold_4929:11690956-11691259 + der_1301 CGGTGATCCTGCTGCCTGGCACCGCTTACGAGGCCAGCCAGATCCTTCAGGTAGAG--C-----AGC---CGGTG-------------CTG-GA----GTA--------AC------CCC------ATCTAACCCATCCTAACAACCACAC-------CTGTT---CCCC--C------ACCCAGCAATTCAAGTGTCCCTATACCATAGACCCATCCAGCTG---G--------------AAG---------AAAAACTATCT------AACTAACTT-------------C-TTAAAAAACGACTAGAGTCA---AT--------C------AAGCCACCTCCA---TATTCCAATTCAAAT-TCTTTACTTTGCATGCTA------TCAGATTATCATCGAGGGCAATGTTAGTCGCAAGACCAAGCGGAATCGCTAGCG
droYak3 2L:10186708-10187011 - dya_273 CGGTGATCCTGCTGCCGGGCACCGCTTTCGAGGCCAGCCAGATCCTTCAGGTAGAG--C-----AGC---CGGTG-------------CTG-GA----GTA--------AC------CCC------ATCTAACCCATCCTAACAACCACAC-------CTGTT---CCCC--C------ACCCAGCAATTCAAGTGTCCTTATACCATAGACCCATCCAGCTG---G--------------AAG---------AAAAACTATCT------AACCAACTT-------------C-TTACAATACGACTAGAGTCA---CT--------C------AAGCCACCTCCA---TATTCCAATTCAAAT-TCTTTACTTTGCATGCTA------TCAGATCATCATCGAGGGCAATGTTAGTCGCAAGACCAAGCGGAATCGCTAGCG
droEug1 scf7180000409452:345549-345850 - CGGTGATCCTGTTACCGGGCACAGCCTTTGAGGCCAGCCAGATCCTTCAGGTAGAA--C-----AGC---CGGTG-------------CCG-GA----GTA--------AC------CCCA-----ATCTAACCCATCCTAACAACCAGAC-------CTATTT--CCCC--C------TCCCAGCAATTCAAGTGTCCCTATACTATAAATTCATCCAACTG--------------------G---------AAAAGCAATCT------AACCGACTT-------------C-ATACAGTTCGACTAGAGTCA---CA--------A------TTTCCATCTCCA---TATTCCAATTCAAAT-T-TTTACTTTGCATGCAA------TCAGATTATCATCGAGGGCAACGTTAGTCGCAAGACCAAGCGGAATCGCTAGCG
droBia1 scf7180000302408:2553439-2553744 + CCGTAATCCTGCTGCCCGGTACCGCCTTCGAGGCCAGCCAGATCCTTCAGGTAGAG--C-----AGC---CGGTG-------------CTG-GA----GTA--------AC------CCCA-----ATCTAACCCATCCTAAC-ACCAGAC-------CTCCTC--CCCG--C------TCCCAGCAATTCAAGTGTCCCTATACTATAGACTCATCCAACTG---G--------------ATG---------AGAAGCAATCT------AACCGACTT-------------C-ATTCAATTCGACTAGCGTCA---CC--------C------TTTCCATCTCCA---TACTCCAATTCAAATGTCTTTACTTTGCATGCCA------TCAGATCATCATCGAGGGCAATGTTAGTCGCAAGACCAAGCGGAATCGCTAGCG
droTak1 scf7180000416008:44945-45259 - CCGTCATCCTGCTGCCGGGCACCGCCTTCGAGGCCAGCCAGATCCTTCAGGTAGAG--C-----AGT---CGGTG-------------CTG-GA----GTA--------AC------CCCA-----ATCTAACCCATCCTAACAACCAGCC-------CTGTTC--CCCC--CTCCCACCACCAGAACTTCAAGTGTCCCTATACCATAAACTCATCCAACTG--------------------G---------AAAAGCAAACT------AACCGATTT-------------C-ATACAATACGAATAGAGCCG---CT--------G------TTCCCATCTCCA---TTATCCAATTCAAAC-TCTTTACTTTGCATGCTATCGCTATCAGATCATCATCGAGGGCAATGTTAGTCGCAAGACCAAGCGGAATCGCTAGCG
droEle1 scf7180000491338:1386060-1386354 - CGGTGATCCTGCTGCCGGGCACCGCCTTCGAGGCCAGCCAGATCCTTCAGGTAGAG--C-----AGC---CGGTG-------------CTG-GA----GTA--------ACACCAACCCCA-----ATCTAACCCATCCTAAC-----------------------CTCC--C------TCCCAGCAATTCAAGTGTCCCTATACTATAAACTCATCCAACTG--------------------G---------AAAAGCAATCT------AACCGACCT-------------C-ATAAAATACGACTAGAGTCA---CT--------C------TATCCACCTCCA---TATTCCAATTCCAAT-TCTTTACTTTGCATGCAA------TCAGATCATCATCGAGGGCAATGTTAGTCGCAAGACGAAGAGGAATCGCTAGCG
droRho1 scf7180000780107:303978-304279 + CCGTGATCCTGCTGCCGGGCACCGCTTTCGAGGCCAGCCAGATCCTTCAGGTAGAG--C-----AGC---CGGTG-------------CTG-GA----GTA--------AC------CCC------ATCTAACCCATCCTAACAACCAGAC-------CTATTT--CACC--C------TCCCAGCAATTCAAGTGTCCCTATACTATAAATTCATCCAATTG--------------------G---------AAAAGCAATCT------AACCAACTT-------------C-CTACAATACGACTAGAGTCA---TA--------C------TGTCCACCTCCA---TATTCCAATTCCAAT-TCTTTACTTTGCATGCTA------TCAGATCATCATCGAGGGGAATGTTAGTCGCAAGACGAAGAGGAATCGCTAGCG
droFic1 scf7180000453925:217362-217664 + CGGTGATTCTGCTGCCGGGCACCGCCTTTGAGGCCAGCCAGATCCTTCAGGTAGAG--C-----AGT---CGGTG-------------CTG-GA----GTA--------AC------CCCA-----ATCTAACCCATCCTAACAACCAGAC-------CCGTTT--CCCC--C------TCCCAGCAATTCAAGTGCCCCTATACTATAAACTCATCCAACTG--------------------G---------AAGGGCAATCT------ATCAAATTT-------------T-TTACAATACGACTAGAGTCG---CT--------T------AATCCACCTCCA---TATTCCAATTCAAAT-TCTTTACTTTGCATGCTA------TCAGATCATCATCGAGGGCAATGTTAGTCGCAAGACCAAGCGGAATCGCTAGCG
droKik1 scf7180000302236:191893-192202 + CCGTGATCCTGCTTCCGGGAACCGCTTTCGAGGCCAGCCAGATCCTTCAGGTAGAG--C-----AGT---CGGTG-------------CTG-GA----GCA--------GC------CTTA-----GTCCAACCAATCCTAACCACCCGAC-----CCCTACT---ACCCCAA------TCCCAGCAATTCAGATGTCCCTATACTAAAAACGCAAGCACCTA--------------------G---------AGAGGAAATCT------AACCGGCTT-------------T-ATCCAAAACGACTTGAATCC-------------G------AATCCACCTCCATACTATTCCAATTCAAAT-TCTTTACTTTGCATGCTAT---CATCAGATCATCATCGAGGGCAATGTCAGTCGCAAGACCAAGCGGAATCGCTAGCG
droAna3 scaffold_12943:1852374-1852689 - CCGTGATCCTGTTGCCGGGCACAGCCTTCGAGGCCAGTCAGATCCTTCAGGTAGAG--C-----AGT---CGGTG-------------CTG-GA----GTA--------AC------TAAA-----ACCTAACACATCCTAACCAACCGAC-------CTACTC--CCTA--A------TCCCAGCAATTCAAGTGCCCCTATACTATTAACTCTAAAAACTG--------------------G---------AGGGGCAAACT------AACCGCTTT-------------T-CCCCTTTACGATTAGCGTTG---CTGCATTTCTC------AAGATTCTGCCATAATTTCTCAATCAAAAT-TCTTTACTTTGCATGCCA----CATCAGATCATCATCGAGGGCAATGTTAGTCGCAAGACCAAGCGGAATCGCTAGCG
droBip1 scf7180000396728:1396293-1396607 + CGGTGATCCTGCTGCCGGGCACAGCCTTCGAGGCCAGTCAGATCCTTCAGGTAGAG--C-----CGT---CGGTG-------------CTG-GA----GTA--------GC------TATA-----ACCTAACACATCCTAACCAACCGAC-------CACCTT--CCCA--A------TCCCAGCAATTCAAGTGCCCCTATACCATTAACTCTAAAAACTG--------------------G---------AGGGGCAAACC------AACCGCTTT-------------T-CCCCTTTACGATTAGCGTTG---CTTCA---CTGTA---GTCTCTGCCACCA---TTTCTCAATCAAAAT-TCTTTACTTTACATGCCACA--TGCCAGATCATCATCGAGGGCAATGTTAGCCGCAAGACCAAGCGGAATCGCTAGCG
dp5 4_group4:5962439-5962738 + CCGTGATCCTGCTGCCGGGAACAGCTTTCGAAGCCAGCCAGATCCTTCAGGTAGAG--C-----AAT---CGGTG-------------GCATG-T---TTA--------AC------CTGAATCCT-------GAATCCTAAAT------CCCATCCC--------CTAA--C------GTACAGCAATTCAAGTGTCCCTATGATATAAT-TAATGCACC------CA---------------AGAAATCCAAAAAGAAGTCC------AAG----TCCCGCT--C-ATAGC-C--------------AGTCA---CC--------GTACTTGCCTCCACCTCCT---TATGACAAACGAAAT-TATTTACTTTGCTTGC--------GCAGATCATCATCGAAGGGAACGTCAGTCGCAAAACCAAAAGGAATCGCTAGCG
droPer2 scaffold_16:929521-929820 - CCGTGATCCTGCTGCCGGGAACAGCTTTCGAAGCCAGCCAGATCCTTCAGGTAGAG--C-----AAT---CGGTG-------------GCATG-T---TTA--------AC------CTGAATCCT-------GAATCCTAAAT------CCCATCCC--------CTAA--C------GTACAGCAATTCAAGTGTCCCTATGATATAAT-TAATGCACC------CA---------------AGAAATCCAAAAAGAAGTCC------AAG----TCCCGCT--C-ATAGC-C--------------AGTCA---CC--------GTACTTGCCTCCACCTCCT---TATGACAAACGAAAT-TATTTACTTTGCTTGC--------GCAGATCATCATCGAAGGGAACGTCAGTCGCAAAACCAAAAGGAATCGCTAGCG
droWil2 scf2_1100000004577:41196-41461 + CCGTCATCCTCTTACCGGGCACAGCTTTTGAGGCCAGTCAGATTCTACAGGTTGGT--A-----TAC---AAATA-------------ATG-TGA---TTA--------AT------CAATT----ATCTAAC--------------------------TGTTTGTCCTT--G------TCACAGCAATTCAAGTGCCCATTTGATTTAGTAGC---CA-------------------------TGACCCAAAATAAGAAATTT------ATG----TT-------------T-ATATAAAACAAAT---GTTATAAAA--------T------GTTGCATTTCTA---T--------------------TCTCTATCAAATA------TCAGATCATCATCGAGGGTAATGTGAGTCGTAAGACTAAACGGAATCGCTAGCG
droVir3 scaffold_12723:705723-706022 - CAGTCATACTGCTACCTGGCACCTGTTTCGAGGCCAGCCAGATACTACAGGTATTAATATAC--ATTTATATATAATGAAACGAGATATTATG-T---TTA--------AG------CTAAAACTA-------A---------------------------AAT--CATG--C------CCACAGCAATTCAAGTGTCCCTATAATTTGCAGTTA-CCACCTG------CCAAATTAGTACAAGAAAATGC-C--ATGCAATTTGTTCGTGAT-----T----TCTATAT-TATGTAAACTATTGATTAAATCT-----------------------------------------------------GTGATTTTTTATCTAT------ATAGATCATCATCGAGGGCAATGTAAGTCGCAAGACCAAACGGAATCGCTAGCG
droMoj3 scaffold_6500:29223951-29224224 - CAGTCATATTGCTTCCGGGCACTTGCTTTGAAGCCAGCCAGATACTACAGGTACAT--G--CATATT---CGATA-------------T---A-TATAGCG--------TT------ATT------ATTTAATAA-------------GCT-------GCAACC--CACG--C------CCACAGCAATTTAAGTGTCCCTATAATTTGGTACTGCCCA-----------------------AGAAAAAACCTCAGAGAAAACT------AAA---------AT--G-ATTGC-GTAAAATCTTAATTGAATCT---AT--------T------ATACTT----------------------------TAACT--ATATCTAT------CCAGATTATCATCGAAGGAAATGTCAGCCGTAAGACCAAACGGAATCGCTAGCG
droGri2 scaffold_15252:4247145-4247435 - CAGTCATCCTGCTGCCTGGCACCTGTTTCGAGGCCAGTCAGATTCTACAGGTATGT--G-----CCT---AGTTG-------------TTC-AA----GCAGCATTTGGA-------TTTA-----AACTAA----------------G-C-------CCTTCC--CATG--C------ACACAGCAATTCAAGTGTCCCTATAATTTCGC-TTATGCACC------AACGAAAATTGTTCAAGAAAAGCC-T--CCGGCATATGTTCGTTAG---------AT--G-TTTTCTGTAAACTTTG-ATTAAAC------TATA---TTGGA---ATTTCTGC---------------------------------------CCA----TTTTAGATCATCATTGAAGGCAATGTGAGTCGCAAGACCAAACGAAATCGCTAGCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGGTGATCCTGCTGCCGGGCACCGCTTTCGAGGCCAGCCAGATCCTTCAGGTAGAG--C-----AGC---CGGTG-------------CTG-GA----GTA--------AC------CCC------ATCTAACCCATCCTAACAACCACAC-------CTGTT---CCCC--C------ACCCAGCAATTCAAGTGTCCCTATACCATAGACCCATCCAGCTGCAGG--------------AAG---------AAAAACTATCT------AACCAACTT-------------C-TTACAAAACGACTAGAGTCG---AT--------C------AAGCCACCTCCA---TATTCCAATTCAAAT-TCTTTACTTTGCATGCTA------TCAGATTATCATCGAGGGCAATGTTAGTCGCAAGACCAAGCGGAATCGCTAGCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................TATCATCGAGGGCAATGTTAGTCGCAA.....................2712.00201100000000000000
.................................................................................................................................................................................................................................................................................................................................................CCACCTCCA---TATTCCAATT....................................................................................1911.00100000100000000000
........................................................................................................................................................................................................................................................................................................................................................................................CATGCTA------TCAGATTATCATCGAGGGC...................................2611.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CAGATTATCATCGAGGGCAATG...............................2211.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................ATCATCGAGGGCAATGTTAGT..........................2111.00100010000000000000
.....................................CCAGATCCTTCAGGTAGAG--C-----A..........................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAGACCAAGCGGAATCGCTAGC.2511.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCAAGACCAAGCGGAA.........1811.00100001000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................GATTATCATCGAGGGCAATGTT.............................2211.00100100000000000000
..................................CAGCCAGATCCTTCAGGTA......................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
................................................................AGC---CGGTG-------------CTG-GA----GTA--------AC------CCC------ATC..........................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
droSec2
CGGTGATCCTGCTGCCGGGCACCGCTTTCGAGGCCAGCCAGATCCTTCAGGTAGAG--C-----AGC---CGGTG-------------CTG-GA----GTA--------AC------CCC------ATCTAACCCATCCTAACAACCACAC-------CTGTT---CCCC--C------ACCCAGCAATTCAAGTGTCCCTATACCATAGACCCATCCAGCTGCAGG--------------AAG---------AAAAACTATCT------AACCAACTT-------------C-TTACAAAACGACTAGAGTCG---AT--------C------AAGCCACCTCCA---TATTCCAATTCAAAT-TCTTTACTTTGCATGCTA------TCAGATTATCATCGAGGGCAATGTTAGTCGCAAGACCAAGCGGAATCGCTAGCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGCGGAATCGCTAGC.2014.0040130
.......................................................................................................................................................................................................................TCCAGCTGCAGG--------------AAG---------AAAAAC........................................................................................................................................................................................2111.0010001
............................................................................................................................................................................C------ACCCAGCAATTCAAGTGTCCCTA.................................................................................................................................................................................................................................................2411.0010010
................................................................................................................................................................................................................................................................................................................................................................................TTACTTTGCATGCTA------TCAGA.................................................2011.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................CATCGAGGGCAATGTTAGTCGCAAGA...................2611.0010100
..............................................................................................................................................................................................................................................................................................................................................................................CTTTACTTTGCATGCTA------TCAG..................................................2111.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................ATCATCGAGGGCAATGTTAGTCGCAA.....................2611.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................TA------TCAGATTATCATCGAGGGC...................................2111.0010001
dm3
CGGTGATCCTGCTGCCGGGCACCGCTTTCGAGGCCAGCCAGATCCTTCAGGTAGAG--C-----AGC---CGGTG-------------CTG-GA----GTA--------AC------CCC------ATCTAACCCATCCTAACAACCACAC-------CTGTT---CCCA--C------ACCCAGCAATTCAAGTGTCCCTATACCATAGACCCATCCAGCTGCAGG--------------AAG---------AAAAACTATCT------AACCAACTT-------------C-TTACAATACGACTAGAGTCG---AT--------C------AAGACACCACCA---TATTCCAATTCAAAT-TCTTTACTTTGCATGCTA------TCAGATTATCATCGAGGGCAATGTGAGTCGCAAGACCAAGCGGAATCGCTAGCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................ATTCCAATTCAAAT-TCTTTA........................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................GCCAGATCCTTCAGGTAGAG--C-----...........................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000
..............................................TCAGGTAGAG--C-----AGC---CGGTG-------------CT.................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................CCCA--C------ACCCAGCAATTCAAGTGTC.....................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TTTCGAGGCCAGCCAGATCCTTCAGG........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..................................................GTAGAG--C-----AGC---CGGTG-------------CTG-GG----.........................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................ATCATCGAGGGCAATGTGAGTCGCAA.....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GCCGGGCACCGCTTTCGAGGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAGACCAAGCGGAATCGCTAGC.2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................ATAGACCCATCCAGCTGCAGG--------------..........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................CCAACTT-------------C-TTACAATACGACT........................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TATCATCGAGGGCAATGTGA............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGGGCAATGTGAGTCGCA......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGGCAATGTGAGTCGCAAGACCAA...............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAGTCGCAAGACCAAGCGGAATCG......2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TTTACTTTGCATGCTA------TCAGATTATCAT..........................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................G-GA----GTA--------AC------CCC------ATCTAACCCA...................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AGGTAGAG--C-----AGC---CGGTG-------------CTG-GA----GTA--------AC------......................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTCGCAAGACCAAGCGGAAA........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CATCGAGGGCAATGTGAG...........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................CC------ATCTAACCCATCCTAACAA..........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CAGCCAGATCCTTCAGGTAGAG--C-----A..........................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................................................................................................................................................................TGCAGG--------------AAG---------AAAAACTATCT------AACCAAC......................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................A------TCAGATTATCATCGAGGGCAATGTGA............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
....................................................................................................................................................................................................................................................................................................C-TTACAATACGACTAGAGT...................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..............................................................................................................................................................................................................................................................................AACCAACTT-------------C-TTACAATA.............................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGCGGAATCGCTAGC.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATTATCATCGAGGGCAATGTGA............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................C------ATCTAACCCATCCTAACAACC........................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CGGTGATCCTGCTGCCGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGGGCAATGTGAGTCGCG......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................AGCAATTCAAGTGTCCCT..................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................CTTTGCATGCTA------TCAGAT................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ATCCTGCTGCCGGGCACCGCTT................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCAATGTGAGTCGCAA.....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................................................................................AGACCCATCCAGCTGCAG.........................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CATCGAGGGCAATGTGAGTCGCAAGA...................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CCGCTTTCGAGGCCAGCCAGAT................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................ATCCTTCAGGTAGAG--C-----AGC---C....................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CGGTGATCCTGCTGCCTGGCACCGCTTACGAGGCCAGCCAGATCCTTCAGGTAGAG--C-----AGC---CGGTG-------------CTG-GA----GTA--------AC------CCC------ATCTAACCCATCCTAACAACCACAC-------CTGTT---CCCC--C------ACCCAGCAATTCAAGTGTCCCTATACCATAGACCCATCCAGCTG---G--------------AAG---------AAAAACTATCT------AACTAACTT-------------C-TTAAAAAACGACTAGAGTCA---AT--------C------AAGCCACCTCCA---TATTCCAATTCAAAT-TCTTTACTTTGCATGCTA------TCAGATTATCATCGAGGGCAATGTTAGTCGCAAGACCAAGCGGAATCGCTAGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................ATCATCGAGGGCAATGTTAGTCGCAA.....................2615.0050000500
......................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGCGGAATCGCTAGC.2013.0030010110
....................ACCGCTTACGAGGCCAGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000200
........................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTAGTCGCAAGACCAAGC.............2212.0020100010
......................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGTTAGTCGCAAGACCAAGC.............2412.0020100010
.................................................................................................................................................................................................................GACCCATCCAGCTG---G--------------AAG---------AAAAACT.......................................................................................................................................................................................2511.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................................ATCATCGAGGGCAATGTTAGTCGC.......................2411.0010000100
...............................................................................................................................................................................................................................................................................................................................................................TTCCAATTCAAAT-TCTTTACT......................................................................2111.0011000000
...............................GGCCAGCCAGATCCTTCAGGTAGAG--C-----...........................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................................ATCATCGAGGGCAATGTTAGTCGCAAGA...................2811.0010000100
.................................................................................................................................................................................................................................................................................TAACTT-------------C-TTAAAAAACGACTAGA.....................................................................................................................................2311.0010100000
..........................................................................................................................................................................................................................................................................................................AAAACGACTAGAGTCA---AT--------C------AAGCCACCT....................................................................................................2811.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................................................AGATTATCATCGAGGGCAATGTTAGT..........................2611.0010000100
...........................................................................................................................................................................................................................GCTG---G--------------AAG---------AAAAACTATC....................................................................................................................................................................................1811.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................AAT-TCTTTACTTTGCATGCT.............................................................2011.0010100000
............................................CTTCAGGTAGAG--C-----AGC---CG...................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
...........................................................................................................................................................................................ATTCAAGTGTCCCTATACCAT...........................................................................................................................................................................................................................................2111.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACCAAGCGGAATCGCTAG..2111.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................A------TCAGATTATCATCGAGGGCAAT................................2311.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCAATGTTAGTCGCAAGACCAAGC.............2811.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAGACCAAGCGGAATCGCT....2211.0010000100
.................................................................................................................................................................................................................GACCCATCCAGCTG---G--------------AAG---------AAA...........................................................................................................................................................................................2111.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................A------TCAGATTATCATCGAGGGC...................................2011.0010000010
..................................................GTAGAG--C-----AGC---CGGTG-------------CTG-GA----.........................................................................................................................................................................................................................................................................................................................................................2011.0010000100
...................................................TAGAG--C-----AGC---CGGTG-------------CTG-GA----GTA--------..............................................................................................................................................................................................................................................................................................................................................2211.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................ATGCTA------TCAGATTATCATCGAG......................................2211.0010001000
.........................................................................................................................................................................................................................................................................................................................................................................................ATGCTA------TCAGATTATCATC.........................................1911.0010001000
..................................................GTAGAG--C-----AGC---CGGTG-------------CTG-GA----G........................................................................................................................................................................................................................................................................................................................................................2111.0010000100
droYak3
CGGTGATCCTGCTGCCGGGCACCGCTTTCGAGGCCAGCCAGATCCTTCAGGTAGAG--C-----AGC---CGGTG-------------CTG-GA----GTA--------AC------CCC------ATCTAACCCATCCTAACAACCACAC-------CTGTT---CCCC--C------ACCCAGCAATTCAAGTGTCCTTATACCATAGACCCATCCAGCTG---G--------------AAG---------AAAAACTATCT------AACCAACTT-------------C-TTACAATACGACTAGAGTCA---CT--------C------AAGCCACCTCCA---TATTCCAATTCAAAT-TCTTTACTTTGCATGCTA------TCAGATCATCATCGAGGGCAATGTTAGTCGCAAGACCAAGCGGAATCGCTAGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................ATGCTA------TCAGATCATCATCGAGGGC...................................2513.00310100010000
...........................................................................................................................................................................................................................................................................................................................................................................................GCTA------TCAGATCATCATCGAGGGC...................................2312.00220000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGGCAATGTTAGTCGCAAGACC.................2512.00200100010000
......................................................................................................................................................................................................................................................................CT------AACCAACTT-------------C-TTACAATACGACTAGA.....................................................................................................................................2812.00220000000000
......................................CAGATCCTTCAGGTAGAG--C-----...........................................................................................................................................................................................................................................................................................................................................................................................1912.00200100010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAGACCAAGCGGAATCGC.....2111.00110000000000
.................................................................................................................................................................................................................................................................................CAACTT-------------C-TTACAATACGACT........................................................................................................................................2011.00100100000000
......................................................................................................................................................................................................................................................................................................................GTCA---CT--------C------AAGCCACCTCCA---TATTCCA.......................................................................................2611.00101000000000
..................................................................................................................................................................................................................................G--------------AAG---------AAAAACTATCT------AACC.........................................................................................................................................................................1911.00100100000000
.........................................................................................................................................................................................................ATACCATAGACCCATCCAGCTG---G--------------AAG---------A.............................................................................................................................................................................................2711.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCAATGTTAGTCGCAA.....................1911.00100000010000
..........................................................................................................................................................................................................................AGCTG---G--------------AAG---------AAAAACTATCT------AACCAA.......................................................................................................................................................................2611.00100000010000
..................................................................................................................................................................................................................ACCCATCCAGCTG---G--------------AAG---------AAAAAC........................................................................................................................................................................................2311.00101000000000
..................................CAGCCAGATCCTTCAGGTAGA....................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CATCGAGGGCAATGTTAGTCGCAAGA...................2611.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGGCAATGTTAGTCGCAAGA...................2311.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGGGCAATGTTAGTCGCAAGA...................2511.00100000010000
....................................................................................................................................................................................................................................................................................................C-TTACAATACGACTAGAGT...................................................................................................................................1911.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................CTTTGCATGCTA------TCAGATCA..............................................2011.00100010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCAATGTTAGTCGCAAGACCAAGC.............2811.00100100000000
.................................................................................................................................................................................................................GACCCATCCAGCTG---G--------------AAG---------AAAAACT.......................................................................................................................................................................................2511.00100100000000
.............................................................................................................................................................................................................................................................................................................................CT--------C------AAGCCACCTCCA---TATTC.........................................................................................2011.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTAGTCGCAAGACCAAGC.............2211.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................TTTGCATGCTA------TCAGATCATCAT..........................................2311.00101000000000
..................................................GTAGAG--C-----AGC---CGGTG-------------CTG-GA----GT.......................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
......TCCTGCTGCCGGGCACCGCTTTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CATCGAGGGCAATGTTAGTCGCAAGAC..................2711.00100000010000
.................................................................................................................................................................................................................GACCCATCCAGCTG---G--------------AAG---------AAAA..........................................................................................................................................................................................2211.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................ATCATCGAGGGCAATGTTAGTCGCAA.....................2611.00100000010000
....................................................................................................................................................................................................................................................................................................C-TTACAATACGACTAGAGTCA---CT--------C------AAG..........................................................................................................2711.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................ATCATCGAGGGCAATGTTAGTCGCAAG....................2711.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................CATCATCGAGGGCAATGTTAGTCGCAAGA...................2911.00100000010000
....GATCCTGCTGCCGGGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAGTCGCAAGACCAAGC.............2111.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TGCTA------TCAGATCATCATCGAGGGC...................................2411.00100000010000
...........................................................................................................................................................................................................................................................................................................ATACGACTAGAGTCA---CT--------C------AA...........................................................................................................2011.00100000010000
......................................................................................................................................................................................................................................................................................................................GTCA---CT--------C------AAGCCACCTCCA---TATTCC........................................................................................2511.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGGCAATGTTAGTCGCAAGACCA................2611.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................ATCATCGAGGGCAATGTTAGT..........................2111.00100000010000
..............................................................................................................................................................................................................................................................................................................CGACTAGAGTCA---CT--------C------AAGCCACCTCC..................................................................................................2611.00101000000000
............................................................................................................................................................................C------ACCCAGCAATTCAAGTGT......................................................................................................................................................................................................................................................1911.00100000010000
....................................................AGAG--C-----AGC---CGGTG-------------CTG-GA----GT.......................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGACCAAGCGGAATCGCTAGC.2411.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGGGCAATGTTAGTCGCA......................2111.00100100000000
......................................................................................................................................................................................................................................................................................................................GTCA---CT--------C------AAGCCACCTCCA---TATTCCAA......................................................................................2711.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CATCGAGGGCAATGTTAGTCGCAAGACC.................2811.00100000010000
.......................................................................................................................................ATCCTAACAACCACAC-------CTGTT---.....................................................................................................................................................................................................................................................................................2111.00101000000000
........................CTTTCGAGGCCAGCCAGAT................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000
droEug1
CGGTGATCCTGTTACCGGGCACAGCCTTTGAGGCCAGCCAGATCCTTCAGGTAGAA--C-----AGC---CGGTG-------------CCG-GA----GTA--------AC------CCCA-----ATCTAACCCATCCTAACAACCAGAC-------CTATTT--CCCC--C------TCCCAGCAATTCAAGTGTCCCTATACTATAAATTCATCCAACTG--------------------G---------AAAAGCAATCT------AACCGACTT-------------C-ATACAGTTCGACTAGAGTCA---CA--------A------TTTCCATCTCCA---TATTCCAATTCAAAT-T-TTTACTTTGCATGCAA------TCAGATTATCATCGAGGGCAACGTTAGTCGCAAGACCAAGCGGAATCGCTAGCGSizeHit CountTotal NormTotal
No Reads
droBia1
CCGTAATCCTGCTGCCCGGTACCGCCTTCGAGGCCAGCCAGATCCTTCAGGTAGAG--C-----AGC---CGGTG-------------CTG-GA----GTA--------AC------CCCA-----ATCTAACCCATCCTAAC-ACCAGAC-------CTCCTC--CCCG--C------TCCCAGCAATTCAAGTGTCCCTATACTATAGACTCATCCAACTG---G--------------ATG---------AGAAGCAATCT------AACCGACTT-------------C-ATTCAATTCGACTAGCGTCA---CC--------C------TTTCCATCTCCA---TACTCCAATTCAAATGTCTTTACTTTGCATGCCA------TCAGATCATCATCGAGGGCAATGTTAGTCGCAAGACCAAGCGGAATCGCTAGCGSizeHit CountTotal NormTotal
No Reads
droTak1
CCGTCATCCTGCTGCCGGGCACCGCCTTCGAGGCCAGCCAGATCCTTCAGGTAGAG--C-----AGT---CGGTG-------------CTG-GA----GTA--------AC------CCCA-----ATCTAACCCATCCTAACAACCAGCC-------CTGTTC--CCCC--CTCCCACCACCAGAACTTCAAGTGTCCCTATACCATAAACTCATCCAACTG--------------------G---------AAAAGCAAACT------AACCGATTT-------------C-ATACAATACGAATAGAGCCG---CT--------G------TTCCCATCTCCA---TTATCCAATTCAAAC-TCTTTACTTTGCATGCTATCGCTATCAGATCATCATCGAGGGCAATGTTAGTCGCAAGACCAAGCGGAATCGCTAGCGSizeHit CountTotal NormTotal
No Reads
droEle1
CGGTGATCCTGCTGCCGGGCACCGCCTTCGAGGCCAGCCAGATCCTTCAGGTAGAG--C-----AGC---CGGTG-------------CTG-GA----GTA--------ACACCAACCCCA-----ATCTAACCCATCCTAAC-----------------------CTCC--C------TCCCAGCAATTCAAGTGTCCCTATACTATAAACTCATCCAACTG--------------------G---------AAAAGCAATCT------AACCGACCT-------------C-ATAAAATACGACTAGAGTCA---CT--------C------TATCCACCTCCA---TATTCCAATTCCAAT-TCTTTACTTTGCATGCAA------TCAGATCATCATCGAGGGCAATGTTAGTCGCAAGACGAAGAGGAATCGCTAGCGSizeHit CountTotal NormTotal
No Reads
droRho1
CCGTGATCCTGCTGCCGGGCACCGCTTTCGAGGCCAGCCAGATCCTTCAGGTAGAG--C-----AGC---CGGTG-------------CTG-GA----GTA--------AC------CCC------ATCTAACCCATCCTAACAACCAGAC-------CTATTT--CACC--C------TCCCAGCAATTCAAGTGTCCCTATACTATAAATTCATCCAATTG--------------------G---------AAAAGCAATCT------AACCAACTT-------------C-CTACAATACGACTAGAGTCA---TA--------C------TGTCCACCTCCA---TATTCCAATTCCAAT-TCTTTACTTTGCATGCTA------TCAGATCATCATCGAGGGGAATGTTAGTCGCAAGACGAAGAGGAATCGCTAGCGSizeHit CountTotal NormTotal
No Reads
droFic1
CGGTGATTCTGCTGCCGGGCACCGCCTTTGAGGCCAGCCAGATCCTTCAGGTAGAG--C-----AGT---CGGTG-------------CTG-GA----GTA--------AC------CCCA-----ATCTAACCCATCCTAACAACCAGAC-------CCGTTT--CCCC--C------TCCCAGCAATTCAAGTGCCCCTATACTATAAACTCATCCAACTG--------------------G---------AAGGGCAATCT------ATCAAATTT-------------T-TTACAATACGACTAGAGTCG---CT--------T------AATCCACCTCCA---TATTCCAATTCAAAT-TCTTTACTTTGCATGCTA------TCAGATCATCATCGAGGGCAATGTTAGTCGCAAGACCAAGCGGAATCGCTAGCGSizeHit CountTotal NormTotal
No Reads
droKik1
CCGTGATCCTGCTTCCGGGAACCGCTTTCGAGGCCAGCCAGATCCTTCAGGTAGAG--C-----AGT---CGGTG-------------CTG-GA----GCA--------GC------CTTA-----GTCCAACCAATCCTAACCACCCGAC-----CCCTACT---ACCCCAA------TCCCAGCAATTCAGATGTCCCTATACTAAAAACGCAAGCACCTA--------------------G---------AGAGGAAATCT------AACCGGCTT-------------T-ATCCAAAACGACTTGAATCC-------------G------AATCCACCTCCATACTATTCCAATTCAAAT-TCTTTACTTTGCATGCTAT---CATCAGATCATCATCGAGGGCAATGTCAGTCGCAAGACCAAGCGGAATCGCTAGCGSizeHit CountTotal NormTotal
No Reads
droAna3
CCGTGATCCTGTTGCCGGGCACAGCCTTCGAGGCCAGTCAGATCCTTCAGGTAGAG--C-----AGT---CGGTG-------------CTG-GA----GTA--------AC------TAAA-----ACCTAACACATCCTAACCAACCGAC-------CTACTC--CCTA--A------TCCCAGCAATTCAAGTGCCCCTATACTATTAACTCTAAAAACTG--------------------G---------AGGGGCAAACT------AACCGCTTT-------------T-CCCCTTTACGATTAGCGTTG---CTGCATTTCTC------AAGATTCTGCCATAATTTCTCAATCAAAAT-TCTTTACTTTGCATGCCA----CATCAGATCATCATCGAGGGCAATGTTAGTCGCAAGACCAAGCGGAATCGCTAGCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................AAACT------AACCGCTTT-------------T-CCCC.................................................................................................................................................1912.002020000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCAAGCGGAATCGCTAGC.2111.001000010
.....................................TCAGATCCTTCAGGTAGAG--C-----A..........................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACCAAGCGGAATCGCTAGC.2211.001000010
..........GTTGCCGGGCACAGCCTTCGAGGCCAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
......................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGTTAGTCGCAAGACCA................2111.001000010
...................................................................................................................................................................................................................................................................................................................................................TCTGCCATAATTTCTCAATCAAAAT-T.............................................................................2611.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................A----CATCAGATCATCATCGAGGGC...................................2211.001010000
......................................................................................................................................................................................................................................................................................T-------------T-CCCCTTTACGATTAGCGTT..................................................................................................................................2111.001010000
..........................................................................................................................................CTAACCAACCGAC-------CTACTC--CCT..................................................................................................................................................................................................................................................................................2211.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................ATCATCGAGGGCAATGTTAGT..........................2111.001000010
droBip1
CGGTGATCCTGCTGCCGGGCACAGCCTTCGAGGCCAGTCAGATCCTTCAGGTAGAG--C-----CGT---CGGTG-------------CTG-GA----GTA--------GC------TATA-----ACCTAACACATCCTAACCAACCGAC-------CACCTT--CCCA--A------TCCCAGCAATTCAAGTGCCCCTATACCATTAACTCTAAAAACTG--------------------G---------AGGGGCAAACC------AACCGCTTT-------------T-CCCCTTTACGATTAGCGTTG---CTTCA---CTGTA---GTCTCTGCCACCA---TTTCTCAATCAAAAT-TCTTTACTTTACATGCCACA--TGCCAGATCATCATCGAGGGCAATGTTAGCCGCAAGACCAAGCGGAATCGCTAGCGSizeHit CountTotal NormTotal
No Reads
dp5
CCGTGATCCTGCTGCCGGGAACAGCTTTCGAAGCCAGCCAGATCCTTCAGGTAGAG--C-----AAT---CGGTG-------------GCATG-T---TTA--------AC------CTGAATCCT-------GAATCCTAAAT------CCCATCCC--------CTAA--C------GTACAGCAATTCAAGTGTCCCTATGATATAAT-TAATGCACC------CA---------------AGAAATCCAAAAAGAAGTCC------AAG----TCCCGCT--C-ATAGC-C--------------AGTCA---CC--------GTACTTGCCTCCACCTCCT---TATGACAAACGAAAT-TATTTACTTTGCTTGC--------GCAGATCATCATCGAAGGGAACGTCAGTCGCAAAACCAAAAGGAATCGCTAGCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................CCTAAAT------CCCATCCC--------CTAA--C------GTAC....................................................................................................................................................................................................................................................................2411.0010000100000
.............................GAAGCCAGCCAGATCCTT............................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACCAAAAGGAATCGCTA...2111.0010100000000
droPer2
CCGTGATCCTGCTGCCGGGAACAGCTTTCGAAGCCAGCCAGATCCTTCAGGTAGAG--C-----AAT---CGGTG-------------GCATG-T---TTA--------AC------CTGAATCCT-------GAATCCTAAAT------CCCATCCC--------CTAA--C------GTACAGCAATTCAAGTGTCCCTATGATATAAT-TAATGCACC------CA---------------AGAAATCCAAAAAGAAGTCC------AAG----TCCCGCT--C-ATAGC-C--------------AGTCA---CC--------GTACTTGCCTCCACCTCCT---TATGACAAACGAAAT-TATTTACTTTGCTTGC--------GCAGATCATCATCGAAGGGAACGTCAGTCGCAAAACCAAAAGGAATCGCTAGCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CCGTCATCCTCTTACCGGGCACAGCTTTTGAGGCCAGTCAGATTCTACAGGTTGGT--A-----TAC---AAATA-------------ATG-TGA---TTA--------AT------CAATT----ATCTAAC--------------------------TGTTTGTCCTT--G------TCACAGCAATTCAAGTGCCCATTTGATTTAGTAGC---CA-------------------------TGACCCAAAATAAGAAATTT------ATG----TT-------------T-ATATAAAACAAAT---GTTATAAAA--------T------GTTGCATTTCTA---T--------------------TCTCTATCAAATA------TCAGATCATCATCGAGGGTAATGTGAGTCGTAAGACTAAACGGAATCGCTAGCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTAAACGGAATCGCTA...2011.00100100
............................TGAGGCCAGTCAGATTCTACA..........................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................CATCATCGAGGGTAATGTGAGT..........................2211.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGACTAAACGGAATCGCTAGC.2411.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................TCATCATCGAGGGTAATGTGAGT..........................2311.00100010
droVir3
CAGTCATACTGCTACCTGGCACCTGTTTCGAGGCCAGCCAGATACTACAGGTATTAATATAC--ATTTATATATAATGAAACGAGATATTATG-T---TTA--------AG------CTAAAACTA-------A---------------------------AAT--CATG--C------CCACAGCAATTCAAGTGTCCCTATAATTTGCAGTTA-CCACCTG------CCAAATTAGTACAAGAAAATGC-C--ATGCAATTTGTTCGTGAT-----T----TCTATAT-TATGTAAACTATTGATTAAATCT-----------------------------------------------------GTGATTTTTTATCTAT------ATAGATCATCATCGAGGGCAATGTAAGTCGCAAGACCAAACGGAATCGCTAGCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................CTAT------ATAGATCATCATCGA.......................................1911.001000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAGACCAAACGGAATCGCTAGC.2511.001000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGGGCAATGTAAGTCGCAAGACC.................2711.001000000000000000010000000000000000000000000000000000000000000000
.................................................................................CGAGATATTATG-T---TTA--------AG------CTA...................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................CCTGTTTCGAGGCCAGCCAGA.................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTCGCAAGACCAAACGGAATCGCT....2811.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAGTCGCAAGACCAAACGGAAT........2511.001000000000000000100000000000000000000000000000000000000000000000
....................ACCTGTTTCGAGGCCAGCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
..................GCACCTGTTTCGAGGCCAGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
CAGTCATATTGCTTCCGGGCACTTGCTTTGAAGCCAGCCAGATACTACAGGTACAT--G--CATATT---CGATA-------------T---A-TATAGCG--------TT------ATT------ATTTAATAA-------------GCT-------GCAACC--CACG--C------CCACAGCAATTTAAGTGTCCCTATAATTTGGTACTGCCCA-----------------------AGAAAAAACCTCAGAGAAAACT------AAA---------AT--G-ATTGC-GTAAAATCTTAATTGAATCT---AT--------T------ATACTT----------------------------TAACT--ATATCTAT------CCAGATTATCATCGAAGGAAATGTCAGCCGTAAGACCAAACGGAATCGCTAGCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGACCAAACGGAATCGCTAGC.2411.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACCAAACGGAATCGCTAGC.2211.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAAACGGAATCGCTAGCG2011.001000001
droGri2
CAGTCATCCTGCTGCCTGGCACCTGTTTCGAGGCCAGTCAGATTCTACAGGTATGT--G-----CCT---AGTTG-------------TTC-AA----GCAGCATTTGGA-------TTTA-----AACTAA----------------G-C-------CCTTCC--CATG--C------ACACAGCAATTCAAGTGTCCCTATAATTTCGC-TTATGCACC------AACGAAAATTGTTCAAGAAAAGCC-T--CCGGCATATGTTCGTTAG---------AT--G-TTTTCTGTAAACTTTG-ATTAAAC------TATA---TTGGA---ATTTCTGC---------------------------------------CCA----TTTTAGATCATCATTGAAGGCAATGTGAGTCGCAAGACCAAACGAAATCGCTAGCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:44 AM