ID:

dsi_27858

 Coordinate:

3r:15860993-15861273 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.3 -11.9 -11.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACCGAGACGAGGCGGAGATACAAAGAGGCCCCAAACAATGCGTAAAAGAGGTGATTGATAACAAGGTGCGCCTTACAAATGTTCACTGTCTGCCCTCCACGAGCAATACAGAAATTCGTTTAGACCTCCAATCCATTCGAAATTCTCTGCGCTTATCTATTTAAGTGCTCTGATTTGGGGAATACATACATATGTACATAGTAGCAGAATTTAGCGACATATGTATGTAAAGAATTCCCTTTTTATTGCTTAATAAAAAGAAGCAACATAATTCTTCATTTACCTTTAATATTGGCAATTTTTGGTAAAACATATTACTTATTTGTCACAGTGTCTATAATTATGCTGATACAATTGGAGCTACAAATAGAGGGTGAAACG
********************************************************************************************************.........................((((...............(((((((......)))))))...))))************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
...........................................................................................................................................................TCTATTTAAGTGCTCTGATT.............................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................AATACAGAAATTCGTTTAGACCTC............................................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................................................................TTCGAAATTCTCTGCGCT.................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................GAATCAGCATAATTCTTCA....................................................................................................... 19 2 4 0.50 2 0 2 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................TGTCACGGTCTCTATAATT....................................... 19 2 2 0.50 1 0 0 1 0 0 0 0
..................................................................................TCATTGTCCGACCTCCACGA....................................................................................................................................................................................................................................................................................... 20 3 4 0.50 2 0 0 0 0 2 0 0
...........................................................................................................................................................................TATTAAGGGAATACATACATATGTACA....................................................................................................................................................................................... 27 3 2 0.50 1 0 0 1 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................AGAATTATGCTGATTCAA........................... 18 2 5 0.40 2 0 2 0 0 0 0 0
...................................................................................................................................................................................................................................................................GAATCAGCATAATTCTT......................................................................................................... 17 2 20 0.25 5 0 5 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................AGAATTATGCTGATTCCATT......................... 20 3 14 0.14 2 0 2 0 0 0 0 0
...................................................................................................................................................................................................................................................................GAATCAGCATAATTCTTC........................................................................................................ 18 2 7 0.14 1 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................ATAATTATGCTGATTC............................. 16 1 8 0.13 1 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................AGAATTATGCTGATTCA............................ 17 2 20 0.10 2 0 2 0 0 0 0 0
..............................................................................................................................................................................................................................................CTTTTTATTGCTAAATA.............................................................................................................................. 17 1 10 0.10 1 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................................................................................AATTTTGGCAATTGTTGGGAA......................................................................... 21 3 18 0.06 1 0 0 0 0 0 0 1
.................................................................................................................................................................................................................................................................................................TATTGGCAATTTTGG............................................................................. 15 1 20 0.05 1 0 1 0 0 0 0 0
...............................................GAAGTGATTGATACCAA............................................................................................................................................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................................................GAATCAGCATAATTCTTCG....................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0
..........................................................................................................................................................ATCTATTGAAGTGGTC................................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................TTGGCCATTTTTGGTAA......................................................................... 17 1 20 0.05 1 0 0 0 0 1 0 0
................................................................................................................................................................................................................................................................................................................................................ATAATTATGCTGATTCCA........................... 18 2 20 0.05 1 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................TTTAATTATGCTGATA.............................. 16 1 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

TGGCTCTGCTCCGCCTCTATGTTTCTCCGGGGTTTGTTACGCATTTTCTCCACTAACTATTGTTCCACGCGGAATGTTTACAAGTGACAGACGGGAGGTGCTCGTTATGTCTTTAAGCAAATCTGGAGGTTAGGTAAGCTTTAAGAGACGCGAATAGATAAATTCACGAGACTAAACCCCTTATGTATGTATACATGTATCATCGTCTTAAATCGCTGTATACATACATTTCTTAAGGGAAAAATAACGAATTATTTTTCTTCGTTGTATTAAGAAGTAAATGGAAATTATAACCGTTAAAAACCATTTTGTATAATGAATAAACAGTGTCACAGATATTAATACGACTATGTTAACCTCGATGTTTATCTCCCACTTTGC
**************************************************************************************************************************************************************************************************************.........................((((...............(((((((......)))))))...))))******************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR618934
dsim w501 ovaries
 M025
embryo
 M023
head
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 M024
male body
..............................................................................................................................................................................................................................................................................................................ACCATTTTTTATAATTAATAAA......................................................... 22 2 6 13.33 80 79 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................ACCATTTTTTATAATTAATAA.......................................................... 21 2 10 6.80 68 65 0 1 0 0 2 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................ACCATTTTTTATAATTAATA........................................................... 20 2 16 3.81 61 54 0 0 0 0 2 0 3 2 0 0
..........................CCGGGGTTTGTTACGCATT................................................................................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................ATTATTTTTCTTCGTTGT................................................................................................................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................TCCACGCGGAATGTTTACAAG......................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................CTTAGTCGTATTAAGAAG........................................................................................................ 18 2 7 0.71 5 0 5 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ATCGCTCTATACATACAT........................................................................................................................................................ 18 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................CATACATTTCGTTAGGGAAAT.......................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................TTAATACGACTAAGGTAA......................... 18 2 19 0.16 3 0 3 0 0 0 0 0 0 0 0 0
...........................................................................................................................TGGAGGTTTGGTAAGCT................................................................................................................................................................................................................................................. 17 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TAGGTATGTAGAAATGTATCAT.................................................................................................................................................................................. 22 3 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................................................CCTTAGTCGTATTAAGAAG........................................................................................................ 19 3 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGCTGGATACCTACATGTC..................................................................................................................................................... 19 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................AGACTAGACCCCTTA...................................................................................................................................................................................................... 15 1 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................AGTCGCCAATAGATAA............................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................TTAATACGACTAAGGTA.......................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................AGGGGAAAAATAACG.................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:15860943-15861323 + dsi_27858 ACCGAGACGAGG------------CGG-AGATACAAAGAGGCC-CCAAACAATGCGTAAAA------------GA-GGTGATTGATAACAAGGTGC--GCCTTACAAATGTTC-ACTGTCTGCCCTCC-ACGAGCAATACAGAAATTCGTTTAGACCTCCAATCCATTCGAAATTCTC----TGCGCTTATCTA---TTTAAGTGCTCTGATTTGGGGAATACA------------------TACATATGTACATAGTAGCAGAATTTAGCGAC-------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTATGTAAAG---------------------------------------------------------------------------------------------------------------------------------AATTCCCTTTTTATTGCTTAATAAA--AAGAAGCAAC-------ATAATTCTTCATTTACCTTTAATAT-TGGCAATTTTTGGTAAAACATAT----------------------------------------------------------------------------------TAC-TTA---TTTGTCA----------------------------------CAGTGTCTATAATTATG----CTGATACAATTGGAGCTACAAATAGAGGGTGAAACG-----------
droSec2 scaffold_0:16729819-16730215 + ACCGAGACGAGG------------CGG-AGATACAAAGAGGCC-CCAAACAATGCGTAAAA------------GA-GGTGATTGATAACAAGGTGC--GCCTTACAAATGTTC-ACTGTCTGCCCTCT-ACGAGCAATACAGAAATTCGTTTAGACCTCCAATCCATTCGAAATTCTC----TGCGCTTATCTA---TTTAAGTGCTCTGATTTGGGGAATACA------------------TACATATGTACATAGTAGCAGAATTTAGCGAC-------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------G------------------------------------------------TGGCAGTATATAA-----CATATGTATGTAAAG---------------------------------------------------------------------------------------------------------------------------------AATTCCCTTTTTATTGCTTAATAAA--AAGAAGCAAC-------ATAATTCTTCATTTACCTTTAATAT-TGGCAATTTTTGGTACAACATAT----------------------------------------------------------------------------------TAC-TTA---TTTGTCA----------------------------------CAGTGTCTATAATTATG----CTGATACAATTGGAGCTACAAATAGAGGGTGAAACG-----------
dm3 chr3R:5164924-5165341 - ACCAAGACGAGG------------CGG-AGATACAAAGGGGCC-TCAAACAATGCGTAAAA------------AA-GGTGATTGATAACAAGGTGC--GCCTTACAAATGTTC-ACTGTCTGCCCTCC-ACGAGCAATACAGAAATTCGTTTAGACCTCCAATCCATACGAAATTCTC----TGCGCTTATCTA---TTTAAATGCTCTGATTTGGGTAATAGATTTGTATAGATTTGTATGTATGTATGTACATTGTAGCAGAATTTAGCGAG-------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------C------------------------------------------------TTGCAGTATATAAACGTACATA---------AT---------------------------------------------------------------------------------------------------------------------------------AATTCCCTTTTTATTGCTTAATAAA--AAGAAGCAACTATCTACATAACTCTTCATTTACCTTTAATTT-TAGCAATTTTTGGTAAAACATAT----------------------------------------------------------------------------------TAC-TTA---TTTGTCA----------------------------------CAGTGTCTATAATTATG----CTGATACAATTGGAGCTACAAATAGAGGGTGAAACG-----------
droEre2 scaffold_4770:16442204-16442603 + ACCGAGACGAGG------------CGG-AGATACAAAGGGGCC-CCAAACAATGCGTAAAA------------GA-GGTGATTGATAACAAGGTGC--GCCTTACAAATGTTC-ACTGTCTGCCCTCC-ACGAGCAATACAGAAATTCGTTAAGACCTCCAATCCATTCGAAATTCAC----TATGCTTATCTACAATTTAAGTGCTCTGATTTGGGGAATTTG------------------TATATACGTACATAGTGGCAGAATTTAGCGAC-------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------C------------------------------------------------TGAAGGTA--------------TGTATGCACATAACACACA-------------------------------------------------------------------------------------------------------------------------AACTTCCATTTTATTGCTTAATAGAATAAAAAGCGACTAT--------CTTTTTACTTAACTTTTATATTTATCAATTTTTGGTATAACATGC----------------------------------------------------------------------------------CGC-TTA---TTTTTCA----------------------------------CGGTGTCTATAATTATG----CTGATACAATTGGAGCTACAAATAGAGGGTGA-ACG-----------
droYak3 3R:9211189-9211569 - ACCGAGACGAGG------------CGG-AGATACAAAGGGGCC-CCAAACAATGCGTAAAA------------GA-GGTGATTGATAACAAGGTGC--GCCTTACAAATGTTC-ACTGTCTGCCCTCC-ACGAGCAATACAGAAATTCGTTAAGACCTCCGATCCATTCGAAATTCTC----CGTGCTTATCTA---TTTAAGTGCTCTGATTTGGGGAATATG------------TGTATGTCTATACGTACATAGTGGCAGAATTTAGCGGT-------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------C------------------------------------------------TGGAAGTACATAAA--TACATA---------------------------------------------------------------------------------------------------------------------------------------------GTTACC-TTGTATTGTTTAATAGA--AAGAAGCTACCAT--------CTTATTACTTTCCTTTT----------ATTTTTTGTATAACA-AT----------------------------------------------------------------------------------CCC-CCT---TTTTTCA----------------------------------CGGTGTCTATAATTATG----CTGATACAATTGGAGCTACAAATAGAGGGTGA-ACG-----------
droEug1 scf7180000407136:543277-543688 + AA---AACGAGA------------AGG-TGATACAAAGGGGCTACCAAACAATGCGTAAAA------------GA-GGTGATTGATAACAAGGTGC--GCCTTACAAATGTTC-ACTGTCTGCCCTCCGACGAGCTGTACAGCTATTCGCTTAGACCTCCAATCTGTTCGAAAGTCTC--TGTATGCTTATCTT---ATTTAGCGCCCTGATTTGGGGAAAT--------------------------CATACATAGTAGCAAAATTTGGTGAC-------------------------------------------------------------------AAGGTT-AAATTGGA--AGGCT-AATTTAGTATGCTGAGAAA-----------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------GT---TG-ATTTGTATT---------------------------CTTTATTA-------TTTGTTTTTTCTATTTAAGATGATCCAGAAGATTCATGAGCTTGCCCTTTTTAAGGC---------------GTTTCTGTTT-------------TCA-------------------------AATATC-------------------------------------------------------------------------------------ACA--TCA---TTTTTCT----------------------------------CAGTGCCTATAATTATT----CGTTTACAATTGGAGCTACAAATAGAGGGTGA-ATG-----------
droBia1 scf7180000302402:7894891-7895103 - GCCGAGACGGAG-----GCGGAGACGG-AGACACAAAGGGGCT-CCAAACAATGCGTAGAA------------GA-GGTGATTGATAACAAGGTGC--GCCTTACAAATGTTC-ACCGCCTGCCCTCG-GCGGGCAGCACAGGAATTCGTTTAGACCTCCAATCTGTTCGGAACTCTG----TATGCTTATCTT---ATTTGG-GCCCTGATTTGGGGAT------------------------------CACACAGTAGCAAAATTTGGCGAC-------------------------------------------------------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415818:143906-144365 + ACCGAGA-----------------CGG-AGATACAAAGGGGCT-CCAAACAATGCGTAAAA------------GA-GGTGATTGATAACAAGGTGC--GCCTTACAAATGTTC-ACTGTCTGCCCTCC-ACGAGCAATACTGAAATTCGTTTAGACCTCCAATCTGTTCGGAACTCTG----TATGCTTATCTT---ATTTGGTGCCCTGATTTGGGGATA------------------------------GCATAGTAGCAGATTTCAGCGAC-------------------------------------------------------------------AAGGTT-A--TTGGCTGAGACTCAATATTGTACGCTGAGAAA-----------TAGTAAAAAATACTTTTATTTTGTCTTTGAAATAAATT----TTTTTAATGGTTAAAGTTAAAAAAAAGATAGTTTTGAGTGTGAGTTTTGTATTTAATTTGTAACGTTCTATAAAA---------------------------------------------------------------ATAAGTA-------AAAAAAATATTTTTT----------------------------------------------------------------------------------------------------------G-----------------------------------------TGT-GTTTTATCACTGGCATTGCCTTTCAAAAAGAT---------------------------------GAGGCAAAACCGACCCC-A---TTTTTTTC----------------------------------T----------------------------------GGTATAAAAAGAAAAGGATTTG-----------
droEle1 scf7180000491194:322406-322846 - GCGGTTA-----------------CGG-AGATACAAAGGGGCT-CCAAGCAATGCGTAAAA------------GA-GGTGATTGATAACAAGGTGC--GTCTTACAAATGTTC-ACTGTCTGCCCTCG-TCG-----------AATTCATTTAGACCTCCAATCTATTCGGTA--CTG----TGTGCTTATCTT---ATTTAGAGCCCTGATT------------------------------------GTACATTGTAGCGAAATTTAAAGTC-------------------------------------------------------------------GAGGTT-TAGT----ATGAGGTCCATATT-----------------------------------T------------------------------TTTTTAATGTGT------------------------------------------------TTACATTCTGTAAATTTGCAAA---------ATTACCCATAATATTTATTTTAGTTGAAGATCAA---AATTTTAAAAATAATCAGAATTACAAAGAAATATTTTTT----------------------------------------------------------------------------------------------------------AATGTTA-------------------------TTGACCAAGCTGT-TTTTTTTTACTTTGATTTATTTTCGTAAAGTCTTTT---------TTCTTCTATTGAA--------------------------A---TTCTTTC----------------------------------CAGTGT--ATAAATATG----CGCTAGCAATTGGAGTTACAAATAGAGGGTGA-ATG-----------
droRho1 scf7180000779488:374416-374851 - CGCGAGA-----------------CGG-AGATACAAAGAGGCT-CCAAACAATGCGTAAAA------------GA-GGTGATTGATAACAAGGTGC--GCCTTACAAATGTTC-ACTGTCTGCCCTCG-ACGAGCAATACCGGAATTCGTTAAGACCTCCAATCTATTCGGTACTATAAATGTGTGCTTATCTT---ATTTAGAGCCCCGATTTACGTAT-----------------------GCATATGTACATAGTAGCGAAATTTGGATAA-------------------------------------------------------------------AAGGTTTTAGT----TGGGACTCCATAGTTTCCAT------------------------------ATTTTCTTTTGTTTT--AAGCAAATTATTTTTTT----------------------------------TGTTGTTTTCGTATTTAATTTTG---------------------------------------------------------------------------------------------------------------------------GATT--------------------------------------------------------------------------------------TCTTTTATTTTA----------------------AATA-GTCGTACTTTTTTCTCT----------------------------------TT-------------------------------CTTC-T---TTTTTTCTCCAAAATTAGGATTTGGTTTGCTTTTAATTTTTGTAGTGTATATATTAATG----CGCTGGCAATTGGAGCTACAAATTGGGGGTGA-ATG-----------
droFic1 scf7180000454106:2024461-2024877 + ATCGAGA-----------------CGG-AGATACAAAGGGGAT-CCAAACAATGCGTAAAA------------GA-GGTGATTGATAACAAGGTGCGCGCCTTACAAATGTTC-ACTGTCTGCCCTCG-CCGAGCAATACAAAAATTCGTTTAGACCTCCAATCTGTTCGGAACTTTG----TGTGCTTATCGT---ATTTAGTGCCCTGATTTGTGTAA-----------------------------ACACAAACTAGCGAAATTTGGCAACGAAGTCTA----------------------------------------TGCTATCAAAATTATTAAATAA--------------------------------------ATAATGAATAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTCTG-ATTTAAA-----------------------------CTTTAAAAATTTTTTTAGGTATTTTTTATTT----TAATCTCG-----------------------------------------------------------------------------------------------------AAGCTGT-G-----------------------------GCTTTAAAACACTCTTT----TTTTGTAATTTAAAAAACTAAAACTGGCAAC-A---TTTTTCCT----------------------------------CGGTGTACATAATTATG----CGCTGGCAATTGGAGCTACAAATAGAGGGTGA-ATG-----------
droKik1 scf7180000302388:1929988-1930143 + GTGGG-GTAAGATGGCAACAGA--AAG-AGTCACAAAGGTGCTCCCAAACAATGCGTAAAAAGCGAACAAAAAGAGGGTGATTGATAACAAGGTGC--GTCTTACAAATGTTC-ACTGGCTGCCCGCG-ACG--GAATACGAAAATTC-TTCAGACCCCCAATCTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13340:4879015-4879048 + -----------------------------------------------------------AA------------GA-GCTAATTGATTACAAGGTGC--GCCTTACAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396359:309167-309497 - AGAGAGAGGGTG------------CAA-AAA-CCGAAGGCAGT-CTCAACAATGCGTAAA--------------A-AGTAATTGATAACAAGGTGC--GCCTTACAAAAATATTAC------------------------A-----------------------------------------------------------------------------------------------------------------------------------ACGGCGTAGATCATGGCGTCTGTCTCTTTTTAAGATTTGTAGGCTCACCTTGTTATCAAAAATATAATCTATGT--TAGA----ATTAGG-----ATT-----------------------------------A------------------------------TTTTTAATGTAT------------------------------------------------TG---------------------GTAAGTTAAA--------------------------AAT-AT---TG-TTTTGAAAT------------------------------------------------------------------------------------------------------AAAAA--AAGTTGCAAT-------ATAACTTGACATCA-------------------------AAAAGCAAGT---------------------------------------------------------------------------------------CATGCTT-TTGA----------------------------T-----GACTGTTTATAATTGAGAACTGGCTGGCAATTGGAGCCACAAATAGAGGGTGA-ATGCATTGCATATG
dp5 2:3259364-3259443 + GAAATGACGCAG------------TGCAAAAGACAAAGGTGGC-CAAAACAATGCGTACAA------------GA-GCTGATTGATAACATGGTGC--GTCTTACAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_7:1082395-1082474 - GAAATGACGCAG------------TGCAAAAGACAAAGGTGGC-CAAAACAATGCGTACAA------------GA-GCTGATTGATAACATGGTGC--GTCTTACAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACCGAGACGAGG------------CGG-AGATACAAAGAGGCC-CCAAACAATGCGTAAAA------------GA-GGTGATTGATAACAAGGTGC--GCCTTACAAATGTTC-ACTGTCTGCCCTCC-ACGAGCAATACAGAAATTCGTTTAGACCTCCAATCCATTCGAAATTCTC----TGCGCTTATCTA---TTTAAGTGCTCTGATTTGGGGAATACA------------------TACATATGTACATAGTAGCAGAATTTAGCGAC-------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTATGTAAAG---------------------------------------------------------------------------------------------------------------------------------AATTCCCTTTTTATTGCTTAATAAA--AAGAAGCAAC-------ATAATTCTTCATTTACCTTTAATAT-TGGCAATTTTTGGTAAAACATAT----------------------------------------------------------------------------------TAC-TTA---TTTGTCA----------------------------------CAGTGTCTATAATTATG----CTGATACAATTGGAGCTACAAATAGAGGGTGAAACG-----------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................TCTA---TTTAAGTGCTCTGATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
.......................................................................................................................................AATACAGAAATTCGTTTAGACCTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
......................................................................................................................................................................TTCGAAATTCTC----TGCGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
droSec2
ACCGAGACGAGG------------CGG-AGATACAAAGAGGCC-CCAAACAATGCGTAAAA------------GA-GGTGATTGATAACAAGGTGC--GCCTTACAAATGTTC-ACTGTCTGCCCTCT-ACGAGCAATACAGAAATTCGTTTAGACCTCCAATCCATTCGAAATTCTC----TGCGCTTATCTA---TTTAAGTGCTCTGATTTGGGGAATACA------------------TACATATGTACATAGTAGCAGAATTTAGCGAC-------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------G------------------------------------------------TGGCAGTATATAA-----CATATGTATGTAAAG---------------------------------------------------------------------------------------------------------------------------------AATTCCCTTTTTATTGCTTAATAAA--AAGAAGCAAC-------ATAATTCTTCATTTACCTTTAATAT-TGGCAATTTTTGGTACAACATAT----------------------------------------------------------------------------------TAC-TTA---TTTGTCA----------------------------------CAGTGTCTATAATTATG----CTGATACAATTGGAGCTACAAATAGAGGGTGAAACG-----------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................TTAGCGAC-------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------G------------------------------------------------TGGCAGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
.........AGG------------CGG-AGATACAAAGAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTACAAATAGAGGGTGAAACG-----------2311.0010010
.............................................................................................................................................................................................ATCTA---TTTAAGTGCTCTGATTTGGGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
dm3
ACCAAGACGAGG------------CGG-AGATACAAAGGGGCC-TCAAACAATGCGTAAAA------------AA-GGTGATTGATAACAAGGTGC--GCCTTACAAATGTTC-ACTGTCTGCCCTCC-ACGAGCAATACAGAAATTCGTTTAGACCTCCAATCCATACGAAATTCTC----TGCGCTTATCTA---TTTAAATGCTCTGATTTGGGTAATAGATTTGTATAGATTTGTATGTATGTATGTACATTGTAGCAGAATTTAGCGAG-------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------C------------------------------------------------TTGCAGTATATAAACGTACATA---------AT---------------------------------------------------------------------------------------------------------------------------------AATTCCCTTTTTATTGCTTAATAAA--AAGAAGCAACTATCTACATAACTCTTCATTTACCTTTAATTT-TAGCAATTTTTGGTAAAACATAT----------------------------------------------------------------------------------TAC-TTA---TTTGTCA----------------------------------CAGTGTCTATAATTATG----CTGATACAATTGGAGCTACAAATAGAGGGTGAAACG-----------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAATTGGAGCTACAAATAGAGGG..................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAATTGGAGCTACAAATAGAGGGTG................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
...............................TACAAAGGGGCC-TCAAACAATGCGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATG----CTGATACAATTGGAGCT..............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................ATTTGGGTAATAGATTTGTATAGATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................C-ACGAGCAATACAGAAATTCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................ATTTGGGTAATAGATTTGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................CAGAAATTCGTTTAGACCTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................AA-GGTGATTGATAACAAGGTGC--GCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT----------------------------------------------------------------------------------TAC-TTA---TTTGTCA----------------------------------CAGTGTCTA...........................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATTGGAGCTACAAATAGAGGG..................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................TC-ACTGTCTGCCCTCC-ACGAGCAATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAATAGAGGGTGA...............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................TCCAATCCATACGAAATTCTC----TGCGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
ACCAAGACGAGG------------CGG-AGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................TACATTGTAGCAGAATTTAGCGAG-------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------C------------------------------------------------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................TGATTGATAACAAGGTGC--GCCTTACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA----------------------------------CAGTGTCTATAATTATG----CT.............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTACAAATAGAGGGTGA...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................TTCGTTTAGACCTCCAATCCATAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................GAG-------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------C------------------------------------------------TTGCAGTATATAAACGTACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................TGCGCTTATCTA---TTTAAATGCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................TTGATAACAAGGTGC--GCCTTAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................ACAATGCGTAAAA------------AA-GGTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTGGAGCTACAAATAGAGGGTG................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................AATCCATACGAAATTCTC----TGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTGGAGCTACAAATAGAGGGTGA...............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................TTTAAATGCTCTGATTTGGGTAATAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAATTGGAGCTACAAATAGAG....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.......................................................................................ACAAGGTGC--GCCTTACAAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAATTGGAGCTACAAATAGAGGG..................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................ATTCTC----TGCGCTTATCTA---...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TGATTTGGGTAATAGATTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................AAA------------AA-GGTGATTGATAACAAGGTGC--GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................GTATAGATTTGTATGTATGTATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------------------------------------------------------C------------------------------------------------TTGCAGTATATAAACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................GATTTGTATGTATGTATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...................................................................................GATAACAAGGTGC--GCCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................................................................................................................................GTATGTATGTATGTACAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ACCGAGACGAGG------------CGG-AGATACAAAGGGGCC-CCAAACAATGCGTAAAA------------GA-GGTGATTGATAACAAGGTGC--GCCTTACAAATGTTC-ACTGTCTGCCCTCC-ACGAGCAATACAGAAATTCGTTAAGACCTCCAATCCATTCGAAATTCAC----TATGCTTATCTACAATTTAAGTGCTCTGATTTGGGGAATTTG------------------TATATACGTACATAGTGGCAGAATTTAGCGAC-------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------C------------------------------------------------TGAAGGTA--------------TGTATGCACATAACACACA-------------------------------------------------------------------------------------------------------------------------AACTTCCATTTTATTGCTTAATAGAATAAAAAGCGACTAT--------CTTTTTACTTAACTTTTATATTTATCAATTTTTGGTATAACATGC----------------------------------------------------------------------------------CGC-TTA---TTTTTCA----------------------------------CGGTGTCTATAATTATG----CTGATACAATTGGAGCTACAAATAGAGGGTGA-ACG-----------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
ACCGAGACGAGG------------CGG-AGATACAAAGGGGCC-CCAAACAATGCGTAAAA------------GA-GGTGATTGATAACAAGGTGC--GCCTTACAAATGTTC-ACTGTCTGCCCTCC-ACGAGCAATACAGAAATTCGTTAAGACCTCCGATCCATTCGAAATTCTC----CGTGCTTATCTA---TTTAAGTGCTCTGATTTGGGGAATATG------------TGTATGTCTATACGTACATAGTGGCAGAATTTAGCGGT-------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------C------------------------------------------------TGGAAGTACATAAA--TACATA---------------------------------------------------------------------------------------------------------------------------------------------GTTACC-TTGTATTGTTTAATAGA--AAGAAGCTACCAT--------CTTATTACTTTCCTTTT----------ATTTTTTGTATAACA-AT----------------------------------------------------------------------------------CCC-CCT---TTTTTCA----------------------------------CGGTGTCTATAATTATG----CTGATACAATTGGAGCTACAAATAGAGGGTGA-ACG-----------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................CCTCC-ACGAGCAATACAGAAATTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGCTACAAATAGAGG...................2011.00100000010000
droEug1
AA---AACGAGA------------AGG-TGATACAAAGGGGCTACCAAACAATGCGTAAAA------------GA-GGTGATTGATAACAAGGTGC--GCCTTACAAATGTTC-ACTGTCTGCCCTCCGACGAGCTGTACAGCTATTCGCTTAGACCTCCAATCTGTTCGAAAGTCTC--TGTATGCTTATCTT---ATTTAGCGCCCTGATTTGGGGAAAT--------------------------CATACATAGTAGCAAAATTTGGTGAC-------------------------------------------------------------------AAGGTT-AAATTGGA--AGGCT-AATTTAGTATGCTGAGAAA-----------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------GT---TG-ATTTGTATT---------------------------CTTTATTA-------TTTGTTTTTTCTATTTAAGATGATCCAGAAGATTCATGAGCTTGCCCTTTTTAAGGC---------------GTTTCTGTTT-------------TCA-------------------------AATATC-------------------------------------------------------------------------------------ACA--TCA---TTTTTCT----------------------------------CAGTGCCTATAATTATT----CGTTTACAATTGGAGCTACAAATAGAGGGTGA-ATG-----------SizeHit CountTotal NormTotal
No Reads
droBia1
GCCGAGACGGAG-----GCGGAGACGG-AGACACAAAGGGGCT-CCAAACAATGCGTAGAA------------GA-GGTGATTGATAACAAGGTGC--GCCTTACAAATGTTC-ACCGCCTGCCCTCG-GCGGGCAGCACAGGAATTCGTTTAGACCTCCAATCTGTTCGGAACTCTG----TATGCTTATCTT---ATTTGG-GCCCTGATTTGGGGAT------------------------------CACACAGTAGCAAAATTTGGCGAC-------------------------------------------------------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ACCGAGA-----------------CGG-AGATACAAAGGGGCT-CCAAACAATGCGTAAAA------------GA-GGTGATTGATAACAAGGTGC--GCCTTACAAATGTTC-ACTGTCTGCCCTCC-ACGAGCAATACTGAAATTCGTTTAGACCTCCAATCTGTTCGGAACTCTG----TATGCTTATCTT---ATTTGGTGCCCTGATTTGGGGATA------------------------------GCATAGTAGCAGATTTCAGCGAC-------------------------------------------------------------------AAGGTT-A--TTGGCTGAGACTCAATATTGTACGCTGAGAAA-----------TAGTAAAAAATACTTTTATTTTGTCTTTGAAATAAATT----TTTTTAATGGTTAAAGTTAAAAAAAAGATAGTTTTGAGTGTGAGTTTTGTATTTAATTTGTAACGTTCTATAAAA---------------------------------------------------------------ATAAGTA-------AAAAAAATATTTTTT----------------------------------------------------------------------------------------------------------G-----------------------------------------TGT-GTTTTATCACTGGCATTGCCTTTCAAAAAGAT---------------------------------GAGGCAAAACCGACCCC-A---TTTTTTTC----------------------------------T----------------------------------GGTATAAAAAGAAAAGGATTTG-----------SizeHit CountTotal NormTotal
No Reads
droEle1
GCGGTTA-----------------CGG-AGATACAAAGGGGCT-CCAAGCAATGCGTAAAA------------GA-GGTGATTGATAACAAGGTGC--GTCTTACAAATGTTC-ACTGTCTGCCCTCG-TCG-----------AATTCATTTAGACCTCCAATCTATTCGGTA--CTG----TGTGCTTATCTT---ATTTAGAGCCCTGATT------------------------------------GTACATTGTAGCGAAATTTAAAGTC-------------------------------------------------------------------GAGGTT-TAGT----ATGAGGTCCATATT-----------------------------------T------------------------------TTTTTAATGTGT------------------------------------------------TTACATTCTGTAAATTTGCAAA---------ATTACCCATAATATTTATTTTAGTTGAAGATCAA---AATTTTAAAAATAATCAGAATTACAAAGAAATATTTTTT----------------------------------------------------------------------------------------------------------AATGTTA-------------------------TTGACCAAGCTGT-TTTTTTTTACTTTGATTTATTTTCGTAAAGTCTTTT---------TTCTTCTATTGAA--------------------------A---TTCTTTC----------------------------------CAGTGT--ATAAATATG----CGCTAGCAATTGGAGTTACAAATAGAGGGTGA-ATG-----------SizeHit CountTotal NormTotal
No Reads
droRho1
CGCGAGA-----------------CGG-AGATACAAAGAGGCT-CCAAACAATGCGTAAAA------------GA-GGTGATTGATAACAAGGTGC--GCCTTACAAATGTTC-ACTGTCTGCCCTCG-ACGAGCAATACCGGAATTCGTTAAGACCTCCAATCTATTCGGTACTATAAATGTGTGCTTATCTT---ATTTAGAGCCCCGATTTACGTAT-----------------------GCATATGTACATAGTAGCGAAATTTGGATAA-------------------------------------------------------------------AAGGTTTTAGT----TGGGACTCCATAGTTTCCAT------------------------------ATTTTCTTTTGTTTT--AAGCAAATTATTTTTTT----------------------------------TGTTGTTTTCGTATTTAATTTTG---------------------------------------------------------------------------------------------------------------------------GATT--------------------------------------------------------------------------------------TCTTTTATTTTA----------------------AATA-GTCGTACTTTTTTCTCT----------------------------------TT-------------------------------CTTC-T---TTTTTTCTCCAAAATTAGGATTTGGTTTGCTTTTAATTTTTGTAGTGTATATATTAATG----CGCTGGCAATTGGAGCTACAAATTGGGGGTGA-ATG-----------SizeHit CountTotal NormTotal
No Reads
droFic1
ATCGAGA-----------------CGG-AGATACAAAGGGGAT-CCAAACAATGCGTAAAA------------GA-GGTGATTGATAACAAGGTGCGCGCCTTACAAATGTTC-ACTGTCTGCCCTCG-CCGAGCAATACAAAAATTCGTTTAGACCTCCAATCTGTTCGGAACTTTG----TGTGCTTATCGT---ATTTAGTGCCCTGATTTGTGTAA-----------------------------ACACAAACTAGCGAAATTTGGCAACGAAGTCTA----------------------------------------TGCTATCAAAATTATTAAATAA--------------------------------------ATAATGAATAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTCTG-ATTTAAA-----------------------------CTTTAAAAATTTTTTTAGGTATTTTTTATTT----TAATCTCG-----------------------------------------------------------------------------------------------------AAGCTGT-G-----------------------------GCTTTAAAACACTCTTT----TTTTGTAATTTAAAAAACTAAAACTGGCAAC-A---TTTTTCCT----------------------------------CGGTGTACATAATTATG----CGCTGGCAATTGGAGCTACAAATAGAGGGTGA-ATG-----------SizeHit CountTotal NormTotal
No Reads
droKik1
GTGGG-GTAAGATGGCAACAGA--AAG-AGTCACAAAGGTGCTCCCAAACAATGCGTAAAAAGCGAACAAAAAGAGGGTGATTGATAACAAGGTGC--GTCTTACAAATGTTC-ACTGGCTGCCCGCG-ACG--GAATACGAAAATTC-TTCAGACCCCCAATCTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
-----------------------------------------------------------AA------------GA-GCTAATTGATTACAAGGTGC--GCCTTACAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AGAGAGAGGGTG------------CAA-AAA-CCGAAGGCAGT-CTCAACAATGCGTAAA--------------A-AGTAATTGATAACAAGGTGC--GCCTTACAAAAATATTAC------------------------A-----------------------------------------------------------------------------------------------------------------------------------ACGGCGTAGATCATGGCGTCTGTCTCTTTTTAAGATTTGTAGGCTCACCTTGTTATCAAAAATATAATCTATGT--TAGA----ATTAGG-----ATT-----------------------------------A------------------------------TTTTTAATGTAT------------------------------------------------TG---------------------GTAAGTTAAA--------------------------AAT-AT---TG-TTTTGAAAT------------------------------------------------------------------------------------------------------AAAAA--AAGTTGCAAT-------ATAACTTGACATCA-------------------------AAAAGCAAGT---------------------------------------------------------------------------------------CATGCTT-TTGA----------------------------T-----GACTGTTTATAATTGAGAACTGGCTGGCAATTGGAGCCACAAATAGAGGGTGA-ATGCATTGCATATGSizeHit CountTotal NormTotal
No Reads
dp5
GAAATGACGCAG------------TGCAAAAGACAAAGGTGGC-CAAAACAATGCGTACAA------------GA-GCTGATTGATAACATGGTGC--GTCTTACAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................ATGCGTACAA------------GA-GCTGATTGATAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100000
......ACGCAG------------TGCAAAAGACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
droPer2
GAAATGACGCAG------------TGCAAAAGACAAAGGTGGC-CAAAACAATGCGTACAA------------GA-GCTGATTGATAACATGGTGC--GTCTTACAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/18/2015 at 08:34 PM