ID:

dsi_2785

 Coordinate:

3r:4696970-4697119 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-24.9 -24.8 -24.8

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. 2r:12198185-12198202 +
  2. 2r:15897042-15897059 +
  3. 2r:16906377-16906394 -
  4. 3l:9497994-9498011 +
  5. 3l:20909647-20909664 +
  6. 3r:4696393-4696410 +
  7. dsi_2785  3r:4697042-4697059 -
  8. 3r:8260791-8260808 +
  9. 3r:9193592-9193609 +
  10. dsi_24490  3r:14268934-14268951 -
  11. 3r:20514539-20514556 -
  12. 3r:21080934-21080951 +
  13. x:5995516-5995533 +
  14. x:6531769-6531786 -
  15. x:9384632-9384649 +
  16. x:10926192-10926209 -
  17. x:11322700-11322717 -
  18. x:11589971-11589988 +
  19. x:11930828-11930845 +
  20. x:14664690-14664707 -
star

Sense Strand Reads

AATATTGTGAATTTCTTAGTGCAAGCCAAATACAACAAAACACAAAAAAGGTAATTTCAGTATCTTGGCGATACATTTGCGAACTGCAATTTGCAATTAGTGGCTACACACACACACACACACATATTGGCACCGTGTGCTATATGTACTAAATATAAAATGTAAAAAGTGAGCGAGCAGCAGACAACAATATCGTATCAAGTGCCTGTGTGTGAGAGTGATTTCGAGTGCCCCTGTGTGTGTGTCAGTA
**************************************************.................((((((...(((((((......)))))))...(((......)))..........((((((.(((((...))))))))))).....................((..((.....))..)).....))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
.........................................................................................................................................................TATAAATTGTTAAAAGTGAGTGA.......................................................................... 23 3 2 0.50 1 1 0 0
.................................................AGTAATTTCAGTATTTCGGC..................................................................................................................................................................................... 20 3 17 0.12 2 0 2 0
..............................................................................................................CACACACACACACATATT.......................................................................................................................... 18 0 20 0.05 1 0 0 1

Anti-sense strand reads

TTATAACACTTAAAGAATCACGTTCGGTTTATGTTGTTTTGTGTTTTTTCCATTAAAGTCATAGAACCGCTATGTAAACGCTTGACGTTAAACGTTAATCACCGATGTGTGTGTGTGTGTGTGTATAACCGTGGCACACGATATACATGATTTATATTTTACATTTTTCACTCGCTCGTCGTCTGTTGTTATAGCATAGTTCACGGACACACACTCTCACTAAAGCTCACGGGGACACACACACAGTCAT
**************************************************.................((((((...(((((((......)))))))...(((......)))..........((((((.(((((...))))))))))).....................((..((.....))..)).....))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...............................................................GAACCGCTATGTAAACGCTTGACGT.................................................................................................................................................................. 25 0 1 2.00 2 2 0 0 0
.................................................................................................................TGTGTGTGTGTATAACCG....................................................................................................................... 18 0 2 1.00 2 0 2 0 0
......................................................................................................................................................................GTCACTCACTCGTCGTCTTTTGT............................................................. 23 3 3 0.33 1 0 0 1 0
..................................................................................................................GTGTGTGTGACTAACCGTTGC................................................................................................................... 21 3 12 0.08 1 0 0 0 1
.............................................................................................................TGTGTGTGTGTGTGTATA........................................................................................................................... 18 0 20 0.05 1 0 0 0 1

Generated: 04/24/2015 at 10:26 AM