ID:dsi_27848 |
Coordinate:3l:7261441-7261663 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -44.1 | -44.0 | -43.8 |
 |
 |
 |
exon [3l_7260550_7261440_-]; CDS [3l_7260550_7261440_-]; CDS [3l_7261664_7261731_-]; exon [3l_7261664_7262010_-]; intron [3l_7261441_7261663_-]
No Repeatable elements found
| ##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GCGGTGCTCCTGCTGGCCAGCGTGGCCTTGGCGGTGGACGACTACGAGGGGTGAGTGAACCGGCGGAGGTGGAGTGGTTCCACAAGCAATTAGCCATTCAGTCAGTAACTTGCACAAAACCTTTTAGCTAGCTTAAATCAATTAAATCAGGGGTGCAAGCTGCTTTCTCAAGGATATTTTAAAAATAGCAAATTTAAGAGCCTGTAAAACTCTAAAAAAAGTAGTTTTAAACAATTTGTTAGCTATTTTACTGATTCCACTTTTTATCTGCAGCTACAAGATCTACGACATCAATGCTCGCAACGCTTTTGAGAAGCAGCTGC **************************************************............(((((...(((((((........((.....)).....(((((((((...((......((((..(((.(((((..(((............)))..)))))))).....))))............(((((((((..........(((((((((......)).)))))))...)))))))))))....))))))))))))))))...)))))..************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M053 female body |
M025 embryo |
M024 male body |
O001 Testis |
SRR553488 RT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
SRR902008 ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................................................................................................................................................................................................CTACAAGATCTACGACATCAATGCT......................... | 25 | 0 | 1 | 5.00 | 5 | 0 | 4 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................................................................................................GATCTACGACATCAATGCTCGCAAC................... | 25 | 0 | 1 | 3.00 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................................................................................................................................................................................................CTACAAGATCTACGACATCAATG........................... | 23 | 0 | 1 | 2.00 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................................................................................ACAAGATCTACGACATCAATGCT......................... | 23 | 0 | 1 | 2.00 | 2 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................................................................................................CTCGCAACGCTTTTGAGAAGCAGCTG. | 26 | 0 | 1 | 2.00 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................................................................................................................................AGATCTACGACATCAATGCTCGCAAC................... | 26 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................................................................................................................................TACAAGATCTACGACATC............................... | 18 | 0 | 1 | 2.00 | 2 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................................................................................................................................TACAAGATCTACGACATCAATGCTCGCA..................... | 28 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................................................................................ATCTACGACATCAATGCTCGCAACGCT................ | 27 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................................................................................................................................................TGCTCGCAACGCTTTTGATAAGCAG.... | 25 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......CTCCTGCTGGCCAGCGTGGCCTTGGC................................................................................................................................................................................................................................................................................................... | 26 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................................................................................ACAAGATCTACGACATCAATGCTCGCAA.................... | 28 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................GGCGGTGGACGACTACGAGGG................................................................................................................................................................................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................................................................................................................................TACAAGATCTACGACATCA.............................. | 19 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................................................................................GCTACAAGATCTACGACATCAAT............................ | 23 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................................................................................ACAAGATCTACGACATCAATG........................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................................................................................ATCTACGACATCAATGCT......................... | 18 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................................................................................GCTACAAGATCTACGACATCAATG........................... | 24 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................................................................................................................................................................CGCAACGCTTTTGAGAAGCAG.... | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................................................................................................................................................CTACGACATCAATGCTCGCAAC................... | 22 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................................................................................................................................TACAAGATCTACGACATCAATGCT......................... | 24 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................................................................................ACAAGATCTACGACATCAATGCTCGCAAC................... | 29 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................................................................................................CATCAATGCTCGCAACGCT................ | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................................................................................................CATCAATGCTCGCAACGCTT............... | 20 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................................................................................................CTCGCAACGCTTTTGAGA......... | 18 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................................................................................ACAAGATCTACGACATCAATGCTCGC...................... | 26 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...GTGCTCCTGCTGGCCAGCGT............................................................................................................................................................................................................................................................................................................ | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................................................................................................................................................................TCGCAACGCTTTTGAGAAGCAGCT.. | 24 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .........CTGCTGGCCAGCGTGGCCTTGGCGGT................................................................................................................................................................................................................................................................................................ | 26 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........TGCTGGCCAGCGTGGCCTTGGCGGTGGA............................................................................................................................................................................................................................................................................................. | 28 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................................................................................................................................GGCTACAAGATCTACGACATCA.............................. | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................CAGCGTGGCCTTGGCGGTGGA............................................................................................................................................................................................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................................................................................................GATCTACGACATCAATGCTCGCAACGC................. | 27 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................................................................................................................................................CTACGACATCAATGCTCGCAACGCTTT.............. | 27 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................................................................................................................................CAAGATCTACGACATCAATGCT......................... | 22 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................................................................................................................................................................................................................ATCAATGCTCGCAACGCT................ | 18 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................................................................................TTAAACAATTTGTTAGCTAT............................................................................. | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............GCCAGCGTGGCCTTGGCGGGGGAC............................................................................................................................................................................................................................................................................................ | 24 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................................................................................ATCTACGACATCAATGCTCGCAACGC................. | 26 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................................................................................................................................GGCTACAAGATCTACGAC.................................. | 18 | 1 | 3 | 0.67 | 2 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................................................................................................AGGGCTACAAGATCTACGACATCAAT............................ | 26 | 3 | 2 | 0.50 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................................................................................................................................................GGGCTACAAGATCTACGACATCAATG........................... | 26 | 2 | 2 | 0.50 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................................................................................................................................GGCTACAAGATCTACGACA................................. | 19 | 1 | 2 | 0.50 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................TTAAGTCAGGGGTGAAAGCC.................................................................................................................................................................. | 20 | 3 | 2 | 0.50 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................................................................TGTTAAACTCTAAAAAAA....................................................................................................... | 18 | 1 | 2 | 0.50 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ......................................................GTGAACCAGCGGAGG.............................................................................................................................................................................................................................................................. | 15 | 1 | 11 | 0.36 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 |
| ..............................................................................................................................................TAAGTCAGGGGTGAAAGC................................................................................................................................................................... | 18 | 2 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................TGCAAGCTGTTTTCTCAAGAT..................................................................................................................................................... | 21 | 3 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..............................................................GCGGATGTGGGGTGGTTC................................................................................................................................................................................................................................................... | 18 | 2 | 4 | 0.25 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................TTAAGTCAGGGGTGAAA..................................................................................................................................................................... | 17 | 2 | 17 | 0.18 | 3 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 1 |
| ........................................................................................................................................................................................AAAGGAAATTTAAGAGCCAGT...................................................................................................................... | 21 | 3 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..............................................................GCGGGGGTGGAGTAGTT.................................................................................................................................................................................................................................................... | 17 | 2 | 20 | 0.10 | 2 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................TTAAGTCAGGGGTGAA...................................................................................................................................................................... | 16 | 2 | 20 | 0.10 | 2 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 |
| ...................................GGACGACTACGAGGGCTA.............................................................................................................................................................................................................................................................................. | 18 | 2 | 14 | 0.07 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................CATAGCAACTTTGAGAGCC......................................................................................................................... | 19 | 3 | 18 | 0.06 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................................................................................................GCGGTTACAAGATCTA...................................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
|
CGCCACGAGGACGACCGGTCGCACCGGAACCGCCACCTGCTGATGCTCCCCACTCACTTGGCCGCCTCCACCTCACCAAGGTGTTCGTTAATCGGTAAGTCAGTCATTGAACGTGTTTTGGAAAATCGATCGAATTTAGTTAATTTAGTCCCCACGTTCGACGAAAGAGTTCCTATAAAATTTTTATCGTTTAAATTCTCGGACATTTTGAGATTTTTTTCATCAAAATTTGTTAAACAATCGATAAAATGACTAAGGTGAAAAATAGACGTCGATGTTCTAGATGCTGTAGTTACGAGCGTTGCGAAAACTCTTCGTCGACG
**************************************************............(((((...(((((((........((.....)).....(((((((((...((......((((..(((.(((((..(((............)))..)))))))).....))))............(((((((((..........(((((((((......)).)))))))...)))))))))))....))))))))))))))))...)))))..************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | O001 Testis |
SRR553486 Makindu_3 day-old ovaries |
GSM343915 embryo |
M024 male body |
M023 head |
M053 female body |
SRR553485 Chicharo_3 day-old ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................GCTCCCCACTCACTTGGCCGC.................................................................................................................................................................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................................................................................................................................................................TGTAGTAGTTTCGAGCGTTGCG................. | 22 | 3 | 2 | 0.50 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................................................................................................................................................................................................GATGTTCTAGTTGCGGTAGTTT............................ | 22 | 3 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................TCACCAAGGTGTTGATTA......................................................................................................................................................................................................................................... | 18 | 2 | 9 | 0.22 | 2 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................................................................GAATAATAGATGTCGATG.............................................. | 18 | 2 | 5 | 0.20 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................................ATTTCTTAAACAAACGATAATAT......................................................................... | 23 | 3 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................................................................GGTGAAAAATAGGCGTAG................................................. | 18 | 2 | 12 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| .................................................................................................................................................................................................AATTCTTGGACATTTT.................................................................................................................. | 16 | 1 | 12 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .....................................................................................................AGTTATTGAACGTGT............................................................................................................................................................................................................... | 15 | 1 | 14 | 0.07 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ....................................................................................................................................................................................................................................................TACAATGACTAAGGTGTAA............................................................ | 19 | 2 | 14 | 0.07 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................................................................CAATCGATGCAATGAC...................................................................... | 16 | 2 | 18 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| .....................................................................................................................................................................................................................................................ACAATGACTAAGGTGTAA............................................................ | 18 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .................................................CCACTCACCAGGTCGCCTC............................................................................................................................................................................................................................................................... | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
Generated: 04/24/2015 at 03:05 AM