ID:

dsi_27844

 Coordinate:

3r:4513905-4513968 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-11.3 -11.2 -10.9

Flybase annnotation

exon [3r_4512123_4513904_-]; CDS [3r_4512123_4513904_-]; CDS [3r_4513969_4514235_-]; exon [3r_4513969_4514235_-]; intron [3r_4513905_4513968_-]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------##################################################
TTGTACTTTCCGCTGTCGTCATCGTGACGGGCATTTTCTCATACTATCAGGTATGTGTCCCTCAAATCTGAGCAGCTGAAGATCGGCTTACTAACTCTGGTGTGTGTTCCGCAGGAATCGAAAAGTTCTAAGATCATGGAATCGTTCAAGAACATGGTACCCCA
**************************************************...((((.....((.(((.(((.((((((...))))))......))).))).)).....)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR902008
ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 O001
Testis
......................................TAATACTGTCAGGTATATGTC......................................................................................................... 21 3 1 32.00 32 20 2 7 1 2 0 0 0 0 0 0 0 0
...........GCTGTCGTCATCGTGACGGGC.................................................................................................................................... 21 0 1 9.00 9 7 2 0 0 0 0 0 0 0 0 0 0 0
......................................TAATACTGTCAGGTATGTC........................................................................................................... 19 3 11 6.45 71 42 11 15 0 0 0 0 3 0 0 0 0 0
............................................................................................................................GTTCTAAGATCATGGAATC..................... 19 0 1 6.00 6 1 4 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................ATCATGGAATCGTTCAAGAAC........... 21 0 1 5.00 5 2 0 3 0 0 0 0 0 0 0 0 0 0
.TGTACTTTCCGCTGTCGTC................................................................................................................................................ 19 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CATGGAATCGTTCAAGAAC........... 19 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0
.........................GACGGGCATTTTCTCATACT....................................................................................................................... 20 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0
.......TTCCGCTGTCGTCATCGTGACG....................................................................................................................................... 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCATGGAATCGTTCAAGAACATGGTAC.... 27 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
.........CCGCTGTCGTCATCGTGACGGGC.................................................................................................................................... 23 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCATGGAATCGTTCAAGAAC........... 20 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGGAATCGTTCAAGAACATGGTA..... 23 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0
.....................TCGTGACGGGCATTTTCTCA........................................................................................................................... 20 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
...................CATCGTGACGGGCATTTTCTC............................................................................................................................ 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TCGAAAAGTTCTAAGATCA............................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................ATGGAATCGTTCAAGAACATGGTACCC.. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................GTTCTAAGATCATGGAATCGTTCAAGAA............ 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................GACGGGCATTTTCTCATACTATCAGGG................................................................................................................ 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................CTAAGATCATGGAATCGTTCAAGA............. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................ATCGAAAAGTTCTAAGATCATGGAA....................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................CGAAAAGTTCTAAGATCATGGAATC..................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..GTACTTTCCGCTGTCGTC................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................ACGGGCATTTTCTCATACTATCAGGAA............................................................................................................... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......TTCCGCTGTCGTCATCGTGACGGG..................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................CATTTTCTCATACTATCAGGAATC............................................................................................................. 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................ATCGTTCAAGAACATGGTACC... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................AGTTCTAAGATCATGGAA....................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................ACGGGCATTTTCTCATACT....................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGGAATCGTTCAAGAACATGGTACCC.. 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................TCATGGAATCGTTCAAGAACATGGT...... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.TTTACTTTCCGCTGTCGTCATCGTG.......................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......TTTCCGCTGTCGTCATCGTGAC........................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............TGTCGTCATCGTGACGGGC.................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.TGTACTTTCCGCTGTCGTCATCGTGACGG...................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................TATCAGGAATCGAAAAGTTCTAAGA............................... 25 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...................CATCGTGACGGTCATTTT............................................................................................................................... 18 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......TTCCGCTGTCGTCATCGTGA......................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............TGTCGTCATCGTGACGGGCA................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................TCATCGTGACGGGCATTTTCTCATAC........................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1
....................................................................................................TGTGTGTTCCGCAGGAATCGAAGAG....................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................CGGCTTACTAACTCTGGTGTGTG.......................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................GGTTCTAAGATCATGGAATCGTT.................. 23 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................CAAATCTGAGCAGCTGAAGATCGGCT............................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GGAATCGTTCAAGAACATGG....... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..GTACTTTCCGCTGTCGAC................................................................................................................................................ 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......TTTCCGCTGTCGTCATCG............................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................GAATCGAAAAGTTCTAAGATCATGGAA....................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................ATCAGGAATCGAAAAGTTCTAAGA............................... 24 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................CGGGCATTTTCTCATACTATCAGGAA............................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................TGTCCCTCAAATCTGATCAGCTGAAGA.................................................................................. 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................GTCATCGTGACGGGCATTTTCT............................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................CATCGTGACGGGCATTTTCT............................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCATGGAATCGTTCAAGAACG.......... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TTCTAAGATCATGGAATC..................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........GCTGTCGTCATCGTGACGG...................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............GTCGTCATCGTGACGGGCATTTTCTC............................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...TACTTTCCGCTGTCGTCATTG............................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................CTAAGATCATGGAATCGTTCAAGAAC........... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................TAATACTGTCAGGTAAGTGTC......................................................................................................... 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................TAATACTGTCAGGTATGT............................................................................................................ 18 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..........CAGTGTCGTCATCGTGACCGG..................................................................................................................................... 21 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................CAGGAATCGAAGAGTT..................................... 16 1 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................TAGGAATCGAAAAGTT..................................... 16 1 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................TAATACTGTCAGGTATATGT.......................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................ATACTGTCAGGTAAATGTC......................................................................................................... 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................ATTCGTTCAAGACCATGA....... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

AACATGAAAGGCGACAGCAGTAGCACTGCCCGTAAAAGAGTATGATAGTCCATACACAGGGAGTTTAGACTCGTCGACTTCTAGCCGAATGATTGAGACCACACACAAGGCGTCCTTAGCTTTTCAAGATTCTAGTACCTTAGCAAGTTCTTGTACCATGGGGT
**************************************************...((((.....((.(((.(((.((((((...))))))......))).))).)).....)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
.....................................................................................................CACTCCAGGCGTCCTAAGCT........................................... 20 3 2 0.50 1 1 0 0 0 0
..................................................................................................................................................GTGCTTGAACCATGGGG. 17 2 7 0.29 2 0 2 0 0 0
.........................................................................TCGACTGCTTGCCGAATG......................................................................... 18 2 5 0.20 1 1 0 0 0 0
...........................................................GGAGTTTAGACTCGC.......................................................................................... 15 1 8 0.13 1 0 0 1 0 0
...........................................................................GAATCCTAGCCGAATG......................................................................... 16 2 20 0.10 2 1 0 0 1 0
..........................................................................GGAATTCTAGCCGAATG......................................................................... 17 2 10 0.10 1 1 0 0 0 0
.............................................TAGTCCCCACACAGGGAGG.................................................................................................... 19 3 11 0.09 1 0 0 1 0 0
.......................................................................................................CTCCAGGCGTCCTAAGCTT.......................................... 19 3 20 0.05 1 0 0 0 0 1
.............................................TAGTCCCCACACAGGG....................................................................................................... 16 2 20 0.05 1 0 0 1 0 0

Generated: 04/24/2015 at 09:18 AM