dsi_27824

five_prime_UTR [3r_8443064_8443500_+]; exon [3r_8443064_8443500_+]; intron [3r_8443501_8446400_+]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGTTGTCCAATTCTCGAGCGGCGCTTGGCCTCGAGTTGCAAATCGCAGCGGTAATAACAAAAACACGTCTGTGTTTACATAAATATGCAATTGAACATGCGAGCATAGCAAATACTAAATTTAGTTTGTTATTGATTACTCGGGTTGCCAGTGGCATCACCCCCCAAACAACCATCCAATCGATTGTAACACAGGGAAAACCCAATAGCTGCAGTACTAATGTGTTATGAAGTGAACAAAATGTTATTTA ************************************************.................(((((((...........(((((((((.....((((((((((((..((((....)))))))))).))....))))(((((....(((.........)))..)))))......)))))))))))))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	M053 female body	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR553486 Makindu_3 day-old ovaries
..............................................................................................................................................................................................................AGCTGCAGTACTAATGTGT.........................	19	0	1	1.00	1	0	1	0	0	0	0
.........ATTCTCGAGCGGCGCTTGGCCTCGAGTT.....................................................................................................................................................................................................................	28	0	1	1.00	1	0	1	0	0	0	0
...................................TTGCAAATCGCAGCGG.......................................................................................................................................................................................................	16	0	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................TGTTATTGATTACTCGGGTTGCCAGT..................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0
........................................................................................................................TGAGATTGTTATGGATTACT..............................................................................................................	20	3	11	0.09	1	1	0	0	0	0	0
............................................................................................................................................................................................................CTAGCTGCAGAATTAATGTG..........................	20	3	12	0.08	1	0	0	0	1	0	0
................................................................................................................................................................................CACTTGATTGTAGCACAGG.......................................................	19	3	13	0.08	1	0	0	0	0	1	0
...............GAGGGGCGGTTGGCCTC..........................................................................................................................................................................................................................	17	2	14	0.07	1	0	0	1	0	0	0
..................................................................................................................................ATTGATGAGTCGGGTTG.......................................................................................................	17	2	16	0.06	1	0	0	0	0	0	1
........................................AATCGCAGCGGTAACAAAAG..............................................................................................................................................................................................	20	3	19	0.05	1	0	0	1	0	0	0

ACAACAGGTTAAGAGCTCGCCGCGAACCGGAGCTCAACGTTTAGCGTCGCCATTATTGTTTTTGTGCAGACACAAATGTATTTATACGTTAACTTGTACGCTCGTATCGTTTATGATTTAAATCAAACAATAACTAATGAGCCCAACGGTCACCGTAGTGGGGGGTTTGTTGGTAGGTTAGCTAACATTGTGTCCCTTTTGGGTTATCGACGTCATGATTACACAATACTTCACTTGTTTTACAATAAAT ************************************************.................(((((((...........(((((((((.....((((((((((((..((((....)))))))))).))....))))(((((....(((.........)))..)))))......)))))))))))))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O002 Head	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs
.....................................................................................................................................................................................................TTTGGGTTATCGACGTCATGA................................	21	0	1	1.00	1	1	0	0	0
.........................................................................................................................................................CGTGGTGGGAGGTTTGTTGGA............................................................................	21	3	6	0.33	2	0	2	0	0
.........................ACGGGAGCTCAACGT..................................................................................................................................................................................................................	15	1	18	0.17	3	0	0	2	1
..........................................................................................................................................................................TGGTAGGTTAGCCATCATCG............................................................	20	3	6	0.17	1	0	1	0	0
........................................................................................................................................................................TTTGGTAGGTTAGCCA..................................................................	16	2	20	0.10	2	0	0	2	0
.................CGTTGCGAACTGGAGCTCA......................................................................................................................................................................................................................	19	3	13	0.08	1	0	0	0	1
......................................................ATTATTTTTGTGCAGA....................................................................................................................................................................................	16	1	14	0.07	1	0	0	1	0
...................................AACGTTTAGCGTCGA........................................................................................................................................................................................................	15	1	20	0.05	1	0	0	0	1
.........................................................................................................................................................................TTGGTAGGTTAGCCAT.................................................................	16	2	20	0.05	1	0	0	1	0
..........................................................................................AACTTGTACGCTGGAA................................................................................................................................................	16	2	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3r:8443451-8443700 +	dsi_27824	TGTTGTCCAATTCTCGAGCGGCG--------CT--TGGCCTCGAGTTG----------CA-----------------------AATC-GCAGCGGTAATAACA---AAA-----------------AC-A---------CGTCTGTGTTTACATA--AATATGCAATTGAACATG---------------------CGAGCATAGCA--AAT-ACTAAATTTA---GTTTGTTATTGATTA------------------------CTCGGGTTGCCAGTGG------CATCACCC-------------CCCAAACA----ACCATCCAATCGATTG-TAACACAGGGAAAAC---C-----------------------------------------------------------------------------------C-AATAGCTGCAGTACTAATGTGTTATGAAGTGAACA--AAATGTT-ATTTA
droSec2	scaffold_12:1342211-1342462 +		TGTTGTCCAATTCTCGAGCGGCG--------CT--TGGCCTCGAGTTG----------CA-----------------------AATC-GCAGCGGTAATAACA---AAA-----------------AC-A---------CGTCTGGGTTTACATA--AATATGCAATTGAGCATG---------------------CGAGCATAGCA--AAT-ACTAAATTTA---GTTTGTTATTGATTA------------------------CTCGGGTTGCCAGTGG------CGTCACCCC------------CCCAAACA----ACCATCCAATCGATTG-TAACACAGGGAAAAAA--C-----------------------------------------------------------------------------------C-AATAGCTGCAGTACTAATGTGTCATGAAGTGAACA--AAATTTT-ATGTA
dm3	chr3R:12813039-12813300 -		TGTTGTCCAATTCTCGAGCGGCG--------CT--TGGCCTCGAGTTG----------CA-----------------------AATC-GCAGCGGTAATAACA---AAA-----------------CC-A---------CGTCTGGGTTTACATA--AATATGCAATTGAACATG---------------------CGAGCATAGCA--AAT-ACTAAATTTA---GTTTGTTATTGATTA------------------------CTCGGATTGCCAGTGG------CACCACCTCC--------CCCCCCCAACGACCATCCATCCAATCGATTG-TAACACAGGGAAAAA-T-C-----------------------------------------------------------------------------------C-AATAGCTGCAGTACTAATGTGCCATGAAGAGAACAACAAATTTT-ATTTA
droEre2	scaffold_4770:8817987-8818257 +		TGTTGTCTAATTCTCGAGCGGCG--------CT--TGGCCTCGAGTTG----------CAAGTCGAG---TCACTTCA-----AATC-GCAGCGGTAATAACA---AAA-----------------AC-A---------ACTTTGGGCTTACATA--AATATGCAATTGAACATG---------------------CGAGCATAGCA--AAT-ACTAAATTGA---GTTTGTTATTGATTA------------------------CTCGGGTTGCCAGTGGCAGTGGCACCACCT-------------CCCATGCA-------ATCGAATCGATTG-TAACACGGGGAGAAA-TAC-----------------------------------------------------------------------------------CTAAAAACTGCTGTACTAATGTGCCGTGAAAGGAGCC--AACTTTT-ATTTA
droYak3	3R:11572778-11573044 +		TGTTGTCTAATTCTCAAGCGGCG--------CT--TGGCCTCGAGTTG----------CAAGTCGAG---TCACTTCA-----AATC-GCAGCGGTAATAACA---AAA-----------------AA-A---------CGTATGTGCTTACATA--AATATGCAATTGAACATG---------------------CGAGCATAGCA--AAT-ACTAAATTGA---GTTTGTTATTGATTA------------------------CTCGGGTTGCCAGTGG------CACCACCT-------------CCCGAACG----ACCATTGAATCGATTG-TGACACAGGGAAAAA-TAT-----------------------------------------------------------------------------------C-AAAATCTGCACTATTAAAGTGCTATGAAAAGAACA--CCATTTT-ATTAA
droEug1	scf7180000409804:249183-249467 -		TGTTGACTAATATTCAATCGGAG--------CT--TGGCCTCGAGTTG----------CAAATCGAG---TCACTTCA-----AATC-GCAGCGGTAATAACA---AAAAAAC-------AGCAAACA-G---------CGACTAAGTTTACATA--AAAATGCAATTGAACATG---------------------CGAGCATAACG--AAA-GCTGAATTGA---GTTTGTTATTGATTA------------------------CTTGGGTTGCCAGTGG------CACCACCTCC--------CTCCCAAAACA----ATCATAAAATCGATTGCTTAGGCAGGGGGGAAATAT-----------GTCAACAACATGGAATTA-----------------------------------------TTAA---AAAACT----------------------------CACCGAAAA--TAATAAT-ATTTA
droBia1	scf7180000299102:762307-762585 -		TGTTGACTAATTCCCAGTCGGCG--------CT--TGGCCTCGAGTTGCACATCGGGGCACATCGAG---TCACTTCA-----AATC-GCAGCGGTAATAACA---AAA-----------------AC-A---------CGTCTGGGCTCACATA--AAAATGCAATTGAACATG---------------------CGAGCATAACA--AAA------ACTGA---GTTTGTTATTGATTA------------------------CTCGGGTTGCCAGTGG------CACCACCACC----------CCCCAAACG----ACCATAAAATCGATTC-TGATACAGGGAAAAA-CTT-----------GTCACCAAATTGTGTTGACTCG--------------------------------AG---TTAA---AAAACC------------CCACTA---------------------AAATGGC-ACATG
droTak1	scf7180000415377:347896-348096 +		TGTTGACTAATTCTCAATCGGCG--------CT--TGGCCTCGAGTTG----------CAAATCGAG---TCACTTCA-----AATC-GCAGCGGTAATAACA---AAA-----------------AC-A---------CGACTGGGTTTACATA--AAAATGCAACTGAACATG---------------------CGAGCATAACACAAAA-GCTAGATTGA---GTTTGTTATTGATTA------------------------CTCGGGTTGCCA-----------------------------------AACA----ACCATTAAATCGATTC-TGGCACAGGGAAAA--------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000486474:1883281-1883578 -		TGTTGACTAATTCTCAATCGGCG--------CT--TGGCCTCGAGTCG----------CAAATCAAG---TCACTTCA-----AATC-GCAGCGGTAATAACA---AAA-----------------AC-A---------CGACTAGGTTTACATA--AAAATGCAATCGAACAT----------------------CGAGCATAGCT--AAA-GCAAAATTGA---ATTTGTTATTGATTA------------------------CTCGGGTTGCCAGTGG------CACCAC----------------CCAAACA----ACAATAAAATCGATTC-TAACACAGGGGAAAAATATGACTAAAATTCGTACCCAATTCGATTT----TGTCTGTGTCAACA------------------CGA-TTATCAAACAAAA----------------------------ATTAACCAAACA--CAAAATTAACCAA
droRho1	scf7180000777248:25774-26047 +		TGTTGACTAATTCTCCATCGGCG--------CT--TGGCCTCGAGTTG----------CAAATCGAG---TCACTTCA-----AATC-GCAGCGGTAATAACA---AAAA----------------AC-A---------CTACGGCGTTTACATA--AACATGCAATTGAGCATG---------------------CGAGCATAACA--AAA-ACAAAATTGA---GTTTCTTATTGATTA------------------------CTCGGGTTGCCAGTGG------CACCAC----------------CCAAACA----ACCATCAAATCGATTC-TAGCACAGGGAAAAA-TATGACT-AAATTCGTTCCCAATTCGTTTTTATTTGTCTATGACATTA------------------CGA-TAA---------------------------------------------------------AC-AATTA
droFic1	scf7180000452523:271612-271920 -		TGTTGACTAATTTTCAATCGGCG--------CT--TGGCCTCGAGTCG----------CAAATCGAG---TCACTTCA-----AATC-GCAGCGGTAATAATAACAAAAATACAAAAAAAA-----AA-A---------CGACTAGGTTTCCATA--AAAATGCAATTTAACATG---------------------CGAGCATAGCA--AAAGGGAAAATTAA---GTTTGTTATTGATTG------------------------CTCGGGTTGCCAGTGG------CACCACCG-------------CCCAAACA----ACCATAAAATCGATTC-TAGCGCAAGGGAAAAACTCGAAAAAAATTCGTCACCCATTCGTGATTATTCA--------------------------------AA---TTAT---------C----AAATGCAGTATAAATGTGACACAA-------------AAAT-ATTGA
droKik1	scf7180000302313:299938-300206 -		TGTTGACTAATTCTCAATCGGTG--------CTTTTGGCCTCGAGGAG----TCGTCGCAAGTCGAG---TCACTTCA-----AATCAGCAGCGGTAATAACA---AAAACAC-------A-----C-AACTATGA---CGA-GAGCTTTACATA--AATGTGCAATTGAACAAG---------------------CGAGCATAACA--AAA-ACAAAATTGA---GTTTGTTATTGATTA------------------------CTCGGGTTGCCAGTGG------CACCACCTTCCCAGTTCA----CCCAACG----CTCATAAAATCGATTC-ATACACAGAGGGGCAAAGT---------------------------------------------------------------------------------------------------------GTCTCGA-----AAA--T-ATAGT-GATTA
droAna3	scaffold_13340:7085103-7085392 +		-GTTGACTAATTCTCAATCGGCATCGGTGTGTT--CGGCCTCGAGCCACAAATCACG--AAATCCAATCATCATATCA-----AATC-ACAGCGGTAATAATAACAAAAA-AA-------A-----A-AACT-TGGCGACAACAAGCTTTACATA--AAAATGCAATCTAACATG---------------------CGAGCATAACA--AAA-ACAAAATAGA---GTT---TATTGATTA------------------------CGCGGGTTGCCAGTAG------CACCATCATATCACTCCACCCCCAAGATA----CCCATTAAATCGATTC-CCACACAGGCAAAAAATAT------------------------------------ATAACATTAAT-------------------------------------------------------TGGGTCAGG----------------TG-GTATA
droBip1	scf7180000396708:1768574-1768890 -		TAATTCTCAATTCTCAATCGGCATCGGTGTGTT--CGGCCTCGACTCACAAATCACG--AAATCCAGTCATCATATCA-----AATC-ACAGCGGTAATAACA---AAAAAAA-------A-----A-AACT-TGACGACAACAAGCTTTACATA--AAAGTGCAATCGAACATG---------------------CGAGCATAACA--AAA-ACAAAATAGA---TT---TTATTGATTA------------------------CGCGGGTTGCCAGTGG------CACCATCATATCACCTCACC-CCCAAA-GA-TACCCACTAAATCGATTC-CCACACAGACAAAAAATGT------------------------------------ATAACATTAAATAGGTCAGTTTGAAAAC------------------------------AA-----------TATAAATTAAATA--AA-AACT-AGGTA
dp5	2:17823196-17823439 -		CGC-----AACCCGCAATCGGTG---CTGTGCT--TGGCCTCG---------------CTGAT-GAG------CTTTAAAATCAATC-AAGGCGGTAATAACA---AAA-----------------AC-A---------CGTCGAGCTTTACATCTTTACATGCAGTTGAGCGTCATCGACTTTTAAAAATAAATGTG-GCAGAAAG--AAT-AGTGTATTGTATTGGTTGTAATTGATTAGCATAACATTGACACACTCGTATTCGTCGGTTGCCAGTGG------CGCCACTTTC-------------C-TACA----GTTGAACAATCGATT------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_0:11682266-11682377 -		TGC---GCAATCCGCAATCGGTG---CTGTGCT--TGGCCTCG---------------CTGAT-GAG------CTTTAAAATCAATC-AAGGCGGTAATAACA---AAA-----------------AC-A---------CGTCGAGCTTTACATCTTTACATGCAGTTGAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TGTTGTCCAATTCTCGAGCGGCG--------CT--TGGCCTCGAGTTG----------CA-----------------------AATC-GCAGCGGTAATAACA---AAA-----------------AC-A---------CGTCTGTGTTTACATA--AATATGCAATTGAACATG---------------------CGAGCATAGCA--AAT-ACTAAATTTA---GTTTGTTATTGATTA------------------------CTCGGGTTGCCAGTGG------CATCACCC-------------CCCAAACA----ACCATCCAATCGATTG-TAACACAGGGAAAAC---C-----------------------------------------------------------------------------------C-AATAGCTGCAGTACTAATGTGTTATGAAGTGAACA--AAATGTT-ATTTA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCAGTACTAATGTGT............................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........ATTCTCGAGCGGCG--------CT--TGGCCTCGAGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................TTG----------CA-----------------------AATC-GCAGCGG............................................................................................................................................................................................................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TGTTATTGATTA------------------------CTCGGGTTGCCAGT....................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

TGTTGTCCAATTCTCGAGCGGCG--------CT--TGGCCTCGAGTTG----------CA-----------------------AATC-GCAGCGGTAATAACA---AAA-----------------AC-A---------CGTCTGGGTTTACATA--AATATGCAATTGAGCATG---------------------CGAGCATAGCA--AAT-ACTAAATTTA---GTTTGTTATTGATTA------------------------CTCGGGTTGCCAGTGG------CGTCACCCC------------CCCAAACA----ACCATCCAATCGATTG-TAACACAGGGAAAAAA--C-----------------------------------------------------------------------------------C-AATAGCTGCAGTACTAATGTGTCATGAAGTGAACA--AAATTTT-ATGTA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................................................................................................................................................................................................................................................................................AAAAA--C-----------------------------------------------------------------------------------C-AATAGCTGCAGT......................................	19	1	2.00	2	0	0	2	0
............................................................................................................A-----------------AC-A---------CGTCTGGGTTTACATA--..............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
...........TCTCGAGCGGCG--------CT--TGGCCTCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.GTTGTCCAATTCTCGAGCGGCG--------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
..............................................................................................................................................................................................................................A---GTTTGTTATTGATTA------------------------CTCGGGT...........................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
........AATTCTCGAGCGGCG--------CT--TGGCCTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
.....................................................................................................CA---AAA-----------------AC-A---------CGTCTGGGTT......................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
...............................................................................................................................C-A---------CGTCTGGGTTTACATA--AATATGC.......................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1
.................................................................................................ATAACA---AAA-----------------AC-A---------CGTCTGGGT.......................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................ATCGATTG-TAACACAGGG................................................................................................................................................	18	1	1.00	1	0	0	0	1

dm3

TGTTGTCCAATTCTCGAGCGGCG--------CT--TGGCCTCGAGTTG----------CA-----------------------AATC-GCAGCGGTAATAACA---AAA-----------------CC-A---------CGTCTGGGTTTACATA--AATATGCAATTGAACATG---------------------CGAGCATAGCA--AAT-ACTAAATTTA---GTTTGTTATTGATTA------------------------CTCGGATTGCCAGTGG------CACCACCTCC--------CCCCCCCAACGACCATCCATCCAATCGATTG-TAACACAGGGAAAAA-T-C-----------------------------------------------------------------------------------C-AATAGCTGCAGTACTAATGTGCCATGAAGAGAACAACAAATTTT-ATTTA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................................................................................................................GATTG-TAACACAGGGAAAAA-T-C-----------------------------------------------------------------------------------C-AAT...............................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................AA-----------------CC-A---------CGTCTGGGTTTAC...................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........AATTCTCGAGCGGCG--------CT--TGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCAGTACTAATGTGCCA..........................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TGGCCTCGAGTTG----------CA-----------------------AATC-GC.................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCCATGAAGAGAACAACA............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................ATC-GCAGCGGTAATAACA---AAA-----------------CC-A---------CG..............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CGGCG--------CT--TGGCCTCGAGTTG----------.................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............CGAGCGGCG--------CT--TGGCCTCGAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGCCATGAAGAGAA.................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CTCGAGCGGCG--------CT--TGGCCTCGAGTTG----------C................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................GCGGTAATAACA---AAA-----------------CC-A---------CGTCTGGGTT......................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TAACACAGGGAAAAA-T-G-----------------------------------------------------------------------------------G-..................................................	18	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TGTTGTCTAATTCTCGAGCGGCG--------CT--TGGCCTCGAGTTG----------CAAGTCGAG---TCACTTCA-----AATC-GCAGCGGTAATAACA---AAA-----------------AC-A---------ACTTTGGGCTTACATA--AATATGCAATTGAACATG---------------------CGAGCATAGCA--AAT-ACTAAATTGA---GTTTGTTATTGATTA------------------------CTCGGGTTGCCAGTGGCAGTGGCACCACCT-------------CCCATGCA-------ATCGAATCGATTG-TAACACGGGGAGAAA-TAC-----------------------------------------------------------------------------------CTAAAAACTGCTGTACTAATGTGCCGTGAAAGGAGCC--AACTTTT-ATTTA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................................................................................................................................................ATATGCAATTGAACATG---------------------CGAGC..................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
...TGTCTAATTCTCGAGCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
............................................GTTG----------CAAGTCGAG---TCACTTCA-----AATC-...................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0

droYak3

TGTTGTCTAATTCTCAAGCGGCG--------CT--TGGCCTCGAGTTG----------CAAGTCGAG---TCACTTCA-----AATC-GCAGCGGTAATAACA---AAA-----------------AA-A---------CGTATGTGCTTACATA--AATATGCAATTGAACATG---------------------CGAGCATAGCA--AAT-ACTAAATTGA---GTTTGTTATTGATTA------------------------CTCGGGTTGCCAGTGG------CACCACCT-------------CCCGAACG----ACCATTGAATCGATTG-TGACACAGGGAAAAA-TAT-----------------------------------------------------------------------------------C-AAAATCTGCACTATTAAAGTGCTATGAAAAGAACA--CCATTTT-ATTAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....GTCTAATTCTCAAGCGGCG--------CT--TGGCCTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................TCA-----AATC-GCAGCGGTAATAACA---AA...............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........ATTCTCAAGCGGCG--------CT--TGGCCTCGAGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAGTGCTATGAAAAGAACA--CCA..........	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................GGCCTCGAGTTG----------CAAGTCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................CATTGAATCGATTG-TGACACAGGGAA..............................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAGTGCTATGAAAAG...................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................GAG---TCACTTCA-----AATC-GCAGCGGG...........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................CTTCA-----AATC-GCAGCGGTAAT........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................ACTTCA-----AATC-GCAGCGGTAATAACA---AAA-----------------AA-..........................................................................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

TGTTGACTAATATTCAATCGGAG--------CT--TGGCCTCGAGTTG----------CAAATCGAG---TCACTTCA-----AATC-GCAGCGGTAATAACA---AAAAAAC-------AGCAAACA-G---------CGACTAAGTTTACATA--AAAATGCAATTGAACATG---------------------CGAGCATAACG--AAA-GCTGAATTGA---GTTTGTTATTGATTA------------------------CTTGGGTTGCCAGTGG------CACCACCTCC--------CTCCCAAAACA----ATCATAAAATCGATTGCTTAGGCAGGGGGGAAATAT-----------GTCAACAACATGGAATTA-----------------------------------------TTAA---AAAACT----------------------------CACCGAAAA--TAATAAT-ATTTA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGTTGACTAATTCCCAGTCGGCG--------CT--TGGCCTCGAGTTGCACATCGGGGCACATCGAG---TCACTTCA-----AATC-GCAGCGGTAATAACA---AAA-----------------AC-A---------CGTCTGGGCTCACATA--AAAATGCAATTGAACATG---------------------CGAGCATAACA--AAA------ACTGA---GTTTGTTATTGATTA------------------------CTCGGGTTGCCAGTGG------CACCACCACC----------CCCCAAACG----ACCATAAAATCGATTC-TGATACAGGGAAAAA-CTT-----------GTCACCAAATTGTGTTGACTCG--------------------------------AG---TTAA---AAAACC------------CCACTA---------------------AAATGGC-ACATG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGTTGACTAATTCTCAATCGGCG--------CT--TGGCCTCGAGTTG----------CAAATCGAG---TCACTTCA-----AATC-GCAGCGGTAATAACA---AAA-----------------AC-A---------CGACTGGGTTTACATA--AAAATGCAACTGAACATG---------------------CGAGCATAACACAAAA-GCTAGATTGA---GTTTGTTATTGATTA------------------------CTCGGGTTGCCA-----------------------------------AACA----ACCATTAAATCGATTC-TGGCACAGGGAAAA--------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGTTGACTAATTCTCAATCGGCG--------CT--TGGCCTCGAGTCG----------CAAATCAAG---TCACTTCA-----AATC-GCAGCGGTAATAACA---AAA-----------------AC-A---------CGACTAGGTTTACATA--AAAATGCAATCGAACAT----------------------CGAGCATAGCT--AAA-GCAAAATTGA---ATTTGTTATTGATTA------------------------CTCGGGTTGCCAGTGG------CACCAC----------------CCAAACA----ACAATAAAATCGATTC-TAACACAGGGGAAAAATATGACTAAAATTCGTACCCAATTCGATTT----TGTCTGTGTCAACA------------------CGA-TTATCAAACAAAA----------------------------ATTAACCAAACA--CAAAATTAACCAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGTTGACTAATTCTCCATCGGCG--------CT--TGGCCTCGAGTTG----------CAAATCGAG---TCACTTCA-----AATC-GCAGCGGTAATAACA---AAAA----------------AC-A---------CTACGGCGTTTACATA--AACATGCAATTGAGCATG---------------------CGAGCATAACA--AAA-ACAAAATTGA---GTTTCTTATTGATTA------------------------CTCGGGTTGCCAGTGG------CACCAC----------------CCAAACA----ACCATCAAATCGATTC-TAGCACAGGGAAAAA-TATGACT-AAATTCGTTCCCAATTCGTTTTTATTTGTCTATGACATTA------------------CGA-TAA---------------------------------------------------------AC-AATTA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGTTGACTAATTTTCAATCGGCG--------CT--TGGCCTCGAGTCG----------CAAATCGAG---TCACTTCA-----AATC-GCAGCGGTAATAATAACAAAAATACAAAAAAAA-----AA-A---------CGACTAGGTTTCCATA--AAAATGCAATTTAACATG---------------------CGAGCATAGCA--AAAGGGAAAATTAA---GTTTGTTATTGATTG------------------------CTCGGGTTGCCAGTGG------CACCACCG-------------CCCAAACA----ACCATAAAATCGATTC-TAGCGCAAGGGAAAAACTCGAAAAAAATTCGTCACCCATTCGTGATTATTCA--------------------------------AA---TTAT---------C----AAATGCAGTATAAATGTGACACAA-------------AAAT-ATTGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGTTGACTAATTCTCAATCGGTG--------CTTTTGGCCTCGAGGAG----TCGTCGCAAGTCGAG---TCACTTCA-----AATCAGCAGCGGTAATAACA---AAAACAC-------A-----C-AACTATGA---CGA-GAGCTTTACATA--AATGTGCAATTGAACAAG---------------------CGAGCATAACA--AAA-ACAAAATTGA---GTTTGTTATTGATTA------------------------CTCGGGTTGCCAGTGG------CACCACCTTCCCAGTTCA----CCCAACG----CTCATAAAATCGATTC-ATACACAGAGGGGCAAAGT---------------------------------------------------------------------------------------------------------GTCTCGA-----AAA--T-ATAGT-GATTA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

-GTTGACTAATTCTCAATCGGCATCGGTGTGTT--CGGCCTCGAGCCACAAATCACG--AAATCCAATCATCATATCA-----AATC-ACAGCGGTAATAATAACAAAAA-AA-------A-----A-AACT-TGGCGACAACAAGCTTTACATA--AAAATGCAATCTAACATG---------------------CGAGCATAACA--AAA-ACAAAATAGA---GTT---TATTGATTA------------------------CGCGGGTTGCCAGTAG------CACCATCATATCACTCCACCCCCAAGATA----CCCATTAAATCGATTC-CCACACAGGCAAAAAATAT------------------------------------ATAACATTAAT-------------------------------------------------------TGGGTCAGG----------------TG-GTATA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................ATCGGCATCGGTGTGTT--CGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	1	0	0	0	1	0
........AATTCTCAATCGGCATCGGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	1	0	0	1	0
.........................................................................................................................................................................................................................................ATTGATTA------------------------CGCGGGTTGCCAGT....................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
........AATTCTCAATCGGCATCGGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
...TGACTAATTCTCAATCGGCATCGGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
...............AATCGGCATCGGTGTGTT--CGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.......................................................................CATATCA-----AATC-ACAGCGGGT..........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................CATTAAT-------------------------------------------------------TGGGTCAGG----------------TG-GTA..	21	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................TTA------------------------CGCGGGTTGCCAGTAG------CAC.........................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...TGACTAATTCTCAATCGGCATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.......TAATTCTCAATCGGCATCGGTGTGTT--........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
......CTAATTCTCAATCGGCATCGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
....GACTAATTCTCAATCGGCATCGGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0

droBip1

TAATTCTCAATTCTCAATCGGCATCGGTGTGTT--CGGCCTCGACTCACAAATCACG--AAATCCAGTCATCATATCA-----AATC-ACAGCGGTAATAACA---AAAAAAA-------A-----A-AACT-TGACGACAACAAGCTTTACATA--AAAGTGCAATCGAACATG---------------------CGAGCATAACA--AAA-ACAAAATAGA---TT---TTATTGATTA------------------------CGCGGGTTGCCAGTGG------CACCATCATATCACCTCACC-CCCAAA-GA-TACCCACTAAATCGATTC-CCACACAGACAAAAAATGT------------------------------------ATAACATTAAATAGGTCAGTTTGAAAAC------------------------------AA-----------TATAAATTAAATA--AA-AACT-AGGTA	Size	Hit Count	Total Norm	Total
No Reads

dp5

CGC-----AACCCGCAATCGGTG---CTGTGCT--TGGCCTCG---------------CTGAT-GAG------CTTTAAAATCAATC-AAGGCGGTAATAACA---AAA-----------------AC-A---------CGTCGAGCTTTACATCTTTACATGCAGTTGAGCGTCATCGACTTTTAAAAATAAATGTG-GCAGAAAG--AAT-AGTGTATTGTATTGGTTGTAATTGATTAGCATAACATTGACACACTCGTATTCGTCGGTTGCCAGTGG------CGCCACTTTC-------------C-TACA----GTTGAACAATCGATT------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................................................................................................GTAATTGATTAGCATAACATTGACA............................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................CTCG---------------CTGAT-GAG------CTTTAAAATC........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................T-AGTGTATTGTATTGGTTGTA..................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................G---CTGTGCT--TGGCCTCG---------------CTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................G------CTTTAAAATCAATC-AAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TATTCGTCGGTTGCCAGTGG------C...........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................................................GAG------CTTTAAAATCAATC-AAGG...............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................GTGG------CGCCACTTTC-------------C-TACA----G..........................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................AAT-AGTGTATTGTATTGGT......................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...........................................................................TTAAAATCAATC-AAGGCGAC...........................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droPer2

TGC---GCAATCCGCAATCGGTG---CTGTGCT--TGGCCTCG---------------CTGAT-GAG------CTTTAAAATCAATC-AAGGCGGTAATAACA---AAA-----------------AC-A---------CGTCGAGCTTTACATCTTTACATGCAGTTGAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............AATCGGTG---CTGTGCT--TGGCCTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
...............AATCGGTG---CTGTGCT--TGGCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
.GC---GCAATCCGCAATCGGTG---CTGTGCT--T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
.........ATCCGCAATCGGTG---CTGTGCT--........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..................................................................G------CTTTAAAATCAATC-AAGGCGACT..........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..............CAATCGGTG---CTGTGCT--TGGCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
........AATCCGCAATCGGTG---CTGTGCT--TGGCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.........ATCCGCAATCGGTG---CTGTGCT--TGGCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...........................................................................TTAAAATCAATC-AAGGCGACT..........................................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0

dsi_27824

3r:8443501-8443650 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-28.1	-28.1	-28.0