ID:

dsi_27823

 Coordinate:

node_10229:7747-7896 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.2 -17.1 -17.1

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(TA)nSimple_repeatSimple_repeat+
Gypsy7-I_Dya-intLTRGypsy+
AT_richLow_complexityLow_complexity+
DNAREP1_DYakRCHelitron-

Sense Strand Reads

ACATACAATATACTATAATATATATATATATATATATATATATATATATATGTGATGTATACGGTATAGACATGTAAGGGAACGGATGTACATATAAAAAAATGAAAATATATTATATTTCTTAAAGTGTGAGCATGTCAATATACATTTACAAGTCCAATAAAAAATTTTAAATTTGAAAACATTTTACATTTTTACAGTTTTGGTCGGATTGATGGCGTGGCAACATCAGTTAACCGTTAACTTGGGC
**************************************************.....((((....((((((((((((((((((...(((((((((........)))....))))))...)))))).........)))))))..)))))...))))...............................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 O002
Head
 M024
male body		 SRR902008
ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
................................................................................AACGGATGTACATATAAAAAAATGAAC............................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................AAAATGAAAATATATTAT...................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................GTGATGCATACGGTATGGAT................................................................................................................................................................................... 20 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................TACGGATGCACAGATAAAAAAA.................................................................................................................................................... 22 3 7 0.29 2 0 0 0 2 0 0 0 0 0 0 0
....................................................................................................................................................................AAATTTTAAGTCTGAAAA.................................................................... 18 2 20 0.20 4 0 0 0 0 2 0 1 0 0 1 0
......................................................................................................TGACAATATATTATATT................................................................................................................................... 17 1 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................AATTTTAAGTCTGAAAAC................................................................... 18 2 20 0.15 3 0 0 0 0 0 0 0 3 0 0 0
.........................................................................GTAAGGGAACGGATC.................................................................................................................................................................. 15 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................AAATTTACAAGTCCTATAAAAAA................................................................................... 23 2 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................TCGGACTGATGGCGT............................. 15 1 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................AAAATTTTAAGTCTGAAAA.................................................................... 19 2 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................AAAAATTTTAAGTCTGAAA..................................................................... 19 2 15 0.07 1 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................AAAAAATTTTAAGTCTGAAAAA................................................................... 22 3 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0
....................................................TGGTGTGTACGGTATAGAA................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................TGTACATAGAAAAAAA.................................................................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................ATGGTCGGATTGATCGCA.............................. 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGTATGTTATATGATATTATATATATATATATATATATATATATATATATACACTACATATGCCATATCTGTACATTCCCTTGCCTACATGTATATTTTTTTACTTTTATATAATATAAAGAATTTCACACTCGTACAGTTATATGTAAATGTTCAGGTTATTTTTTAAAATTTAAACTTTTGTAAAATGTAAAAATGTCAAAACCAGCCTAACTACCGCACCGTTGTAGTCAATTGGCAATTGAACCCG
**************************************************.....((((....((((((((((((((((((...(((((((((........)))....))))))...)))))).........)))))))..)))))...))))...............................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
.......................................................................................................................................ACAGTTATATGTAAATGTTCAGGTTAT........................................................................................ 27 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................TCAGGTTATTTTTTAAAATTTAAACTT...................................................................... 27 0 1 1.00 1 0 0 1 0 0
........................................................................................ATGTATATTTTTTTACTTTTATATAAT....................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0
..........................................................................................................................................GTTATATGTAAATGTTCAGGTTATTTT..................................................................................... 27 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................................CAAGCCCAGCCTAACTA.................................. 17 2 12 0.08 1 0 1 0 0 0
...................................................................................................................................................................................................................................TAGTCAATTGGAAAT........ 15 1 19 0.05 1 0 0 0 1 0
.....................................................................................................................AAAGAACTTCACACT...................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0
.................................................................................................TCGTTACTGTTATATAATATA.................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 node_10229:7697-7946 + dsi_27823 ACATA----CAATATACTAT----------------------------------------AATATATA---------------------------------------------------------------------------TATATATATATAT----ATATA----TATA----------TATATGTGATGTATAC-GGTAT-----AGACATGT-------A------------------------------------------------------AGGGAACGGATGTACAT-----------------------------------------------------------------------------------------------------------------------------------------------ATAAAAAAATGAAAATA------------------------------------------------------------------TATTATATTTCTTAAAGTGTGAGCATGTCAATATACATTT-----------------------ACAAGTCCAATAAAAAA---------------------------------------------------------------------------------------------------TTTTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGAAAACATTTTAC-----ATTTTTACAGTTTTGGTCGGAT------------TGATGGCGTGGCAA---------CATCAGTTAACCGTTAACTTGG-----G--------C
droSec2 scaffold_65:60997-61242 - ATATT----TTTTTCA------------------------------------------------------------------------------------------------------CATATGAGTA---------------T---TGCA----A----GCATTTAATTA------TA----TATATGTGATGTATAC-GGTAT-----AGACATGT-------A------------------------------------------------------AGGGAACGGATGTACAT-----------------------------------------------------------------------------------------------------------------------------------------------ATAAAAAAATGAAAATA------------------------------------------------------------------TATTATATTTCTTAAAGTGTGAGCATGTCAATATACATTT-----------------------ACAAGTCCAATAAAAAA-TTT--------------------------------------------------------------------------------------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------A-----------------ATTTGAAAACATGTTAC-----ATTTTTACAGTTTTGGTCGGAT------------TGATGGTGTGGCAA---------CATCAGTTAACAGTTAACTTGG-----G--------C
dm3 chr2RHet:495468-495612 - GAATA----TGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------AGGGAAAGGATGTAGAT-----------ATAAAAAA--TG--------------AGGATA---------------------------------------------------TATTAAA---ACATTTAATTAAAA----------------------------------------------------------------------------------------------------------------------------AAATTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATACATTACATTACATTT-TA-TGTTTTGGGCGGAT------------TAACGGCGTGGCAA---------CATCAGT-AACGTTTAACTTGG-----G--------C
droEre2 scaffold_4512:254763-254987 + AGCCG----TGCGATATCGC--------------------------------------GAAC--TACT-------------------------------------------------------------------------TGCATACATAAGTGT----A--T------A-------------------------------------ATAGCTAGAAAGCTAA-------GATTATGAATGCAGTATC--AAGTAA-----------------------ATCTAACGCCTAGACAA-----------------------------------------------------------------------------------------------------------------------------------------------ATAATAAAACCAAAAAA------------------------------------------------------------------T------------------------------------------------------------------------------------------TCAAAACATTTTTTAAAAGTGTGACTA----------------------------------------ATAAA------------AAA-ATTCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCAAAACAT-------------------TTT-----------GTGGGCGTTAGCGTAGGAGTGGTAACAGC------AGGAATCAACAACAATCTTGC-----G--------C
droYak3 v2_chrUn_6308:93-389 + TCCAA----CAAAAGGATAA----------------------------------------TA--TATATTTCAGGAAATACAAAAAATACTTAGAGATAATGAGGAACATCGATTTCGCATTTAGATATTAAGCAAAAGCTTTAA------------------------TGAA--TAAA--------TGTATAACATATG--TATGTGGGCGCTAGAG-------T-----------GGGAG---TGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----AAAAGT--TTTTT----------------------------------------GGCAAATCGATAGAAATTT-----------------------ACAAGACCAATACAAAAATGAAAAAATATCAAAACATTTTTCAAAAGTGTGGGCGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTTTTGGGCGGTTTGTGGGCGTTAGAATGGGCGTGACAA---------CATGAAT---CGACAAACTTGC-----G--------C
droEug1 scf7180000408984:548800-549013 + CCTTA----CTATGAAATAT----------------------------------------ATTAAATATATATATA---------------------------------------------------------------TATATATATATA--------------------------------TATATTTAATATATTT-CATAT-----ATATATAT-------A------------------------------------------------------TATATATATATATATAT-----------------------------------------------------------------------------------------------------------------------------------------------AATATATAATACAAATATATAA----------------------------------------------------------------AATATATATTATAATATATATATATATATATATATAT-----------------------AAATA------------------------------------------------------------------------TATAATACAAATATAT---------------------------------------------------------------------------------------------------------------------------------------AAAAACATACTTA--TTAAA--------------AA-----------------TTTAAATT--------------------------------------------------------------------------------TTACGAAATTTTT-----A--------C
droBia1 scf7180000298389:29245-29426 + TTCTA----CGTTAT--AGC--------------------------------------CATA--TATA-------------------------------------------------------------------------TATATATATATATAT----A--TA----TATA--TATA--------TATGTAGCTTAAA--TTG-----AATTGCTAAATTTAGTAAGG-------AATCTAAGATAT------------------------------------------A------------------------------------------ATCATA---------------------------------------------------TATACAACCTATATTTAATAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAGTTAGCAGGCAAATTTTTAAGTAGTTGGAGATGTAAAAATATA------------------------------------------------------------------------------------TTAC-----A--------T
droTak1 scf7180000415871:287510-287763 + AGCGA----TACGATATTTT--------------TAA-----------------------AA--TATT--TG-A---------------------------------------------------------------------CATCC-------------------------------------------------CT-A-----------------------------------------------------------------------------------------------------ATAGATATATAAATTTTG--------------ATTGCG---------------------------------------------------------------------------------------------------------------------TATAACTTTTTAATGAATGGTCCGATTTGA----GAAATG--TCTTC----------------------------------------TACATTTCGATAGGTATAAATATACACAACAAAATTGCATTTATACTTCTCGGAA-ATC-TTT---------------------AAAGATGTGGGCGC------------------------AGGACCC---------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTAAAATCGTTAGTGGGC--------------------------------------------------GATT-----------GTGGGCGTTAAAGGGGGCGTGGCGC-----------TCGGT-TAAAATAAACTTGC-----G--------C
droEle1 scf7180000489988:861-1004 + ATATA----TAATATAATAT--------------------------------------ATAA--TATATATATATA---------------------------------------------------------------TATATATATATA------------T--------ATATATATATA----TATAT-----------------------------------ATATATATATA----------------------------------------------TATATATATATAT-----------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATATATA-----TATAT----------A------------------------------------------------------T----ATATATATATA--------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATATATATATA-----T--------A
droRho1 scf7180000765648:38541-38845 + ACAAA----TAATACAAAATAATAGAACACATTTTAAAACAAGAGAGAACGCTATAGTCGGG--TGCC------------CCGACAAT---------------------------------------------------------------C------------------------------------------------------------------------------------------------------------------AGATACCCGTTATCAGGTAAAGGGAGTGCGAGGGAGATGGAGATAGAAACTTTG--------------ATCACG---------------------------------------------------------------------------------------------------------------------CATAACTTTTTAACGAATGGTCCGATTTGA----AAAATT--TCTTC----------------------------------------TACATTTCGATAGGTATTGATAAACACAATAAAACTGCATTT-TACTTTTCCGAA-ATA-TTT---------------------------------------------------------------------------------------------------AA----------------------------------------------------------------------------------------------------------------------ATTTTAAAATCGTATATAAGC--------------------------------------------------GATT-----------GTGGGCGTCAGAGGGGGCGTGGCAC---------CATTTT---GAAACAAACTTGC-----G--------C
droFic1 scf7180000454072:81595-81777 - ATACC----ATATGC------------------------------------------------------ATACATA---------------------------------------------------------------TATATATACATATATAT----ATATA----TATA--TATA--------TGTATAGTCTATG--TAT-----ATATGTGTAGTTAAGTATGT-------GAAAACCGTAAT---------------------------------------------------------------------------------------------------------------------------------------AAATGAAAATCTACCCTGAA---------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------AGCAAGAGAAAAGAAATTCAAATAAATATTTGCATGCAAGAGTAAGTTTAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAATTCCA-----A--------A
droKik1 scf7180000301701:10153-10332 - ACGTA----AATACT--TAT----------------------------------------AATATACATATATGTATGTTTACACAAT---------------------------------------------------------------TGTAT----ATACA----TATG--TATG--------TATGT-----------------------------------ATATCTTTATG--------------------------------------------TATTCGTATGTACAT-------------------------------------------GTGTA----------------------------------------------------------------------TGAATGCAGGTATATACAT-------------------------------------------------------------------------------------------------------------------------ATGTACAT-----------------------ACATGTATGAAGAAAA----------------------------------------------------------------------------------------------------CTTTAT----------------------------------------------------------------------------------ATATGTACTTATGTACATACATTTAGATAGGT-------------------------------------------------------------------------------------------------------------------------------------------------A-----T--------G
droAna3 scaffold_13340:21643953-21644134 - ACATGCATACATTAT--GAA--------------------------------------AATA--TATA-------------------------------------------------------------------------TATATATATA----TATGTA--T------GTA--TATA--------TATACAGG--------------------------------------ATATATATACGATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGTGTGTAT------------------------------CTTAT----------ACATGCATTGAAACCAAGTT--TATTATACAGTGAAAACATTATAATAAAA----------------------------------------TACAACAAA---------------------------------------------------------------AAAATAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--AAACA--------------AATTC--A-----------ACTTG-AAGCAT----------------------------------------------------------------------------------------T-----T--------T
droBip1 scf7180000396575:235959-236086 + TATAT----ATATA---------------------------------------------------------------------------------------------------------------------------------TATATATATATAT----ATATA----TATA--TATA--------TATATAA---------------------------------------CTATG------------------------------------------------TATAC-------------------------------------------------ATGCA----------------------------------------------------------------------TAAGAGCCGGCAGACAGACATACATACACTCGGATGCTAATG------------------------------------------------------------------CATAATGTAACTTTAAGTACGACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----G--------T
dp5 XR_group8:1684045-1684218 + ACATA----TTATATGCTAT----------------------------------------ATTATATATATACATA---------------------------------------------------------------TATATATATATA----T----------------ATATATATATA----TATAT-----------------------------------ATATGATTATATACATAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATACATATACATAACTTAT----------A------------------------------------------------------C----ATATATACATA--------------------------------------------------------------TATATATATATATTCTTA-----------------------------------CATAT-------------------------------------------------TATTAAAGACAAAAAACGTTGTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTTAA-----A--------A
droPer2 scaffold_0:3485694-3485913 - ACATTC---GTATATACTAC----------------------------------------GATATAAATA-------------------------------------------------------------------------TATGTATATATAT----ATATA------TATATATA------TATATGGT-----------------AGGTATAT-------T---------------------------------------------------------GGACGTATGTGCAT-----------------------------------------------------------------------------------------------------------------------------------------------ACGAAAACATA----TG-------------------------CATTGCAAGAACGTGAATATCATCCCGTTG--CCGGGATAATAATATGTATCTAAAAATATATGTA-------------------------------------------------------------------------------------------------------------------TATGCTATATATATTT---------------------------------------------------------------------------------------------------------------------------------------AAATAGACATTGA--ATCAA--------------AG-----------------CTTTGATT--------------------------------------------------------------------------------ACGCGTTTCGTTT-----T--------T
droWil2 scf2_1100000003286:473-661 - AATAT----ACATA-----------------------------------------------------------------------------------------------------------------------------TATATATATATA----T----ATATATATATA------TA----TATATGTGTTGACTCC-GATAT-----ATATATAT-------TAGT--------------GTATATAGTCATATATCCGACTCCAATACCCAATAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATA---------------------------------AATATTTCATAAAATATTAATATG-----ATATATTA-----------------------ATATATCCTA---------------------------------------------------------------------------------------------------------------AAATTCATAACGTTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAACATCCGTTTTTA-----T--------A
droVir3 scaffold_12736:111848-112034 - ACGTG----TAAAACTTAAT----------------------------------------TA--TATATA-----------------------------------------------------------------------TATATATATA--TAT----ATATA----TATA--TATA--------TATGAAA---------------------------------------TTATGGAAT-----------------------------------------TGACGGATGGGAAT-----------A-----------TATAATATATATAT------ATATATATCTTCATTTTGGACTTAGCCACAAATTCAATCGCTATAAATAATATTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--CTCCA--------------AA------------------TTTG----------A--------------TATTTT---------GTGTGTT------------------------------------------------------TTGAGTGAAT
droMoj3 scaffold_6680:23731957-23732275 - ACTAA----AGGAGCTAGAT----------------------------------------CA--TATATTTATATA---------------------------------------------------------------TATATATATATATATAT----ATATA----TATA--TATA--------TATATGATCTACGCATTA-----ATAC-----CTTTCATTTTA-------TA---------------------------------------------------------------------------------TATAATATGTATAT------GTATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------GTACATACGAATATATATTTAATTAACTGCATATAAAGTATAT---------------------------------TCTTGATCAGGTCGACGAGCAGAGTCGTGTATCCGTGTCCGAGTGTCTGTCTGTCCGTATGTTTGAACGCATCGATTTCAGAAGATATA---------AGAGCTA----GAGACTTTTTTAAT--------------------------------------G------ATCGTAT---TTATAGCAGGGATGTCGAGGC------------TTCAAA-AATCCTTAACTCAC-----T--------C
droGri2 scaffold_14624:2118147-2118312 - TATAT----ATATA-----------------------------------------------------------------------------------------------------------------------------TATATATATATA----T----ATATATATATA------TA----TATATATATTATATAC-CATTA-----ATACACG-------------------------------------------------------------------CACAAATGTATAT-----------------------------------------------------------------------------------------------------------------------AAAGTAAAGTAAATTAAT----------------------G-----TTCGC----------A--TGGAT---ATGTG---------------------------------------------------------------GAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATGAACACA---------------------------------------------------TTACAGCGATCCAATCTT------GAATCAATTTTATATGATT--------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACATA----CAATATACTAT----------------------------------------AATATATA---------------------------------------------------------------------------TATATATATATAT----ATATA----TATA----------TATATGTGATGTATAC-GGTAT-----AGACATGT-------A------------------------------------------------------AGGGAACGGATGTACAT-----------------------------------------------------------------------------------------------------------------------------------------------ATAAAAAAATGAAAATA------------------------------------------------------------------TATTATATTTCTTAAAGTGTGAGCATGTCAATATACATTT-----------------------ACAAGTCCAATAAAAAA---------------------------------------------------------------------------------------------------TTTTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGAAAACATTTTAC-----ATTTTTACAGTTTTGGTCGGAT------------TGATGGCGTGGCAA---------CATCAGTTAACCGTTAACTTGG-----G--------CSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................AACGGATGTACAT-----------------------------------------------------------------------------------------------------------------------------------------------ATAAAAAAATGAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGAAAATA------------------------------------------------------------------TATTAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
........................................................................................................................................................................................................................GT-------A------------------------------------------------------AGGGAACGGATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1580.13100000000010000000
droSec2
ATATT----TTTTTCA------------------------------------------------------------------------------------------------------CATATGAGTA---------------T---TGCA----A----GCATTTAATTA------TA----TATATGTGATGTATAC-GGTAT-----AGACATGT-------A------------------------------------------------------AGGGAACGGATGTACAT-----------------------------------------------------------------------------------------------------------------------------------------------ATAAAAAAATGAAAATA------------------------------------------------------------------TATTATATTTCTTAAAGTGTGAGCATGTCAATATACATTT-----------------------ACAAGTCCAATAAAAAA-TTT--------------------------------------------------------------------------------------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------A-----------------ATTTGAAAACATGTTAC-----ATTTTTACAGTTTTGGTCGGAT------------TGATGGTGTGGCAA---------CATCAGTTAACAGTTAACTTGG-----G--------CSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTGTGAGCATGTCAATATACAT......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
dm3
GAATA----TGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------AGGGAAAGGATGTAGAT-----------ATAAAAAA--TG--------------AGGATA---------------------------------------------------TATTAAA---ACATTTAATTAAAA----------------------------------------------------------------------------------------------------------------------------AAATTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATACATTACATTACATTT-TA-TGTTTTGGGCGGAT------------TAACGGCGTGGCAA---------CATCAGT-AACGTTTAACTTGG-----G--------CSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................GGGAAAGGATGTAGAT-----------AT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTGGGCGGAT------------TAACGGCGTGG.................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................GAAAGGATGTAGAT-----------ATAAAAAA--TG--------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GGGAAAGGATGTAGAT-----------C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------AGGGAAAGGATGTAGGG-----------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................GAAAGGATGTAGAT-----------C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1550.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGCCG----TGCGATATCGC--------------------------------------GAAC--TACT-------------------------------------------------------------------------TGCATACATAAGTGT----A--T------A-------------------------------------ATAGCTAGAAAGCTAA-------GATTATGAATGCAGTATC--AAGTAA-----------------------ATCTAACGCCTAGACAA-----------------------------------------------------------------------------------------------------------------------------------------------ATAATAAAACCAAAAAA------------------------------------------------------------------T------------------------------------------------------------------------------------------TCAAAACATTTTTTAAAAGTGTGACTA----------------------------------------ATAAA------------AAA-ATTCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCAAAACAT-------------------TTT-----------GTGGGCGTTAGCGTAGGAGTGGTAACAGC------AGGAATCAACAACAATCTTGC-----G--------CSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TCCAA----CAAAAGGATAA----------------------------------------TA--TATATTTCAGGAAATACAAAAAATACTTAGAGATAATGAGGAACATCGATTTCGCATTTAGATATTAAGCAAAAGCTTTAA------------------------TGAA--TAAA--------TGTATAACATATG--TATGTGGGCGCTAGAG-------T-----------GGGAG---TGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----AAAAGT--TTTTT----------------------------------------GGCAAATCGATAGAAATTT-----------------------ACAAGACCAATACAAAAATGAAAAAATATCAAAACATTTTTCAAAAGTGTGGGCGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTTTTGGGCGGTTTGTGGGCGTTAGAATGGGCGTGACAA---------CATGAAT---CGACAAACTTGC-----G--------CSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTTTGTGGGCGTTAG............................................................18200.10202000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGCGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTTTTGGGC............................................................................22200.10202000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGTTTGTGGGCGTTAGAATGG.......................................................24200.05101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCGTGACAA---------CATGAAT---CG.........................20200.05100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCGTGACAA---------CATGAAT---CG.........................21200.05101000000000
droEug1
CCTTA----CTATGAAATAT----------------------------------------ATTAAATATATATATA---------------------------------------------------------------TATATATATATA--------------------------------TATATTTAATATATTT-CATAT-----ATATATAT-------A------------------------------------------------------TATATATATATATATAT-----------------------------------------------------------------------------------------------------------------------------------------------AATATATAATACAAATATATAA----------------------------------------------------------------AATATATATTATAATATATATATATATATATATATAT-----------------------AAATA------------------------------------------------------------------------TATAATACAAATATAT---------------------------------------------------------------------------------------------------------------------------------------AAAAACATACTTA--TTAAA--------------AA-----------------TTTAAATT--------------------------------------------------------------------------------TTACGAAATTTTT-----A--------CSizeHit CountTotal NormTotal
No Reads
droBia1
TTCTA----CGTTAT--AGC--------------------------------------CATA--TATA-------------------------------------------------------------------------TATATATATATATAT----A--TA----TATA--TATA--------TATGTAGCTTAAA--TTG-----AATTGCTAAATTTAGTAAGG-------AATCTAAGATAT------------------------------------------A------------------------------------------ATCATA---------------------------------------------------TATACAACCTATATTTAATAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAGTTAGCAGGCAAATTTTTAAGTAGTTGGAGATGTAAAAATATA------------------------------------------------------------------------------------TTAC-----A--------TSizeHit CountTotal NormTotal
No Reads
droTak1
AGCGA----TACGATATTTT--------------TAA-----------------------AA--TATT--TG-A---------------------------------------------------------------------CATCC-------------------------------------------------CT-A-----------------------------------------------------------------------------------------------------ATAGATATATAAATTTTG--------------ATTGCG---------------------------------------------------------------------------------------------------------------------TATAACTTTTTAATGAATGGTCCGATTTGA----GAAATG--TCTTC----------------------------------------TACATTTCGATAGGTATAAATATACACAACAAAATTGCATTTATACTTCTCGGAA-ATC-TTT---------------------AAAGATGTGGGCGC------------------------AGGACCC---------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTAAAATCGTTAGTGGGC--------------------------------------------------GATT-----------GTGGGCGTTAAAGGGGGCGTGGCGC-----------TCGGT-TAAAATAAACTTGC-----G--------CSizeHit CountTotal NormTotal
No Reads
droEle1
ATATA----TAATATAATAT--------------------------------------ATAA--TATATATATATA---------------------------------------------------------------TATATATATATA------------T--------ATATATATATA----TATAT-----------------------------------ATATATATATA----------------------------------------------TATATATATATAT-----------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATATATA-----TATAT----------A------------------------------------------------------T----ATATATATATA--------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATATATATATATA-----T--------ASizeHit CountTotal NormTotal
No Reads
droRho1
ACAAA----TAATACAAAATAATAGAACACATTTTAAAACAAGAGAGAACGCTATAGTCGGG--TGCC------------CCGACAAT---------------------------------------------------------------C------------------------------------------------------------------------------------------------------------------AGATACCCGTTATCAGGTAAAGGGAGTGCGAGGGAGATGGAGATAGAAACTTTG--------------ATCACG---------------------------------------------------------------------------------------------------------------------CATAACTTTTTAACGAATGGTCCGATTTGA----AAAATT--TCTTC----------------------------------------TACATTTCGATAGGTATTGATAAACACAATAAAACTGCATTT-TACTTTTCCGAA-ATA-TTT---------------------------------------------------------------------------------------------------AA----------------------------------------------------------------------------------------------------------------------ATTTTAAAATCGTATATAAGC--------------------------------------------------GATT-----------GTGGGCGTCAGAGGGGGCGTGGCAC---------CATTTT---GAAACAAACTTGC-----G--------CSizeHit CountTotal NormTotal
No Reads
droFic1
ATACC----ATATGC------------------------------------------------------ATACATA---------------------------------------------------------------TATATATACATATATAT----ATATA----TATA--TATA--------TGTATAGTCTATG--TAT-----ATATGTGTAGTTAAGTATGT-------GAAAACCGTAAT---------------------------------------------------------------------------------------------------------------------------------------AAATGAAAATCTACCCTGAA---------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------AGCAAGAGAAAAGAAATTCAAATAAATATTTGCATGCAAGAGTAAGTTTAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAATTCCA-----A--------ASizeHit CountTotal NormTotal
No Reads
droKik1
ACGTA----AATACT--TAT----------------------------------------AATATACATATATGTATGTTTACACAAT---------------------------------------------------------------TGTAT----ATACA----TATG--TATG--------TATGT-----------------------------------ATATCTTTATG--------------------------------------------TATTCGTATGTACAT-------------------------------------------GTGTA----------------------------------------------------------------------TGAATGCAGGTATATACAT-------------------------------------------------------------------------------------------------------------------------ATGTACAT-----------------------ACATGTATGAAGAAAA----------------------------------------------------------------------------------------------------CTTTAT----------------------------------------------------------------------------------ATATGTACTTATGTACATACATTTAGATAGGT-------------------------------------------------------------------------------------------------------------------------------------------------A-----T--------GSizeHit CountTotal NormTotal
No Reads
droAna3
ACATGCATACATTAT--GAA--------------------------------------AATA--TATA-------------------------------------------------------------------------TATATATATA----TATGTA--T------GTA--TATA--------TATACAGG--------------------------------------ATATATATACGATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGTGTGTAT------------------------------CTTAT----------ACATGCATTGAAACCAAGTT--TATTATACAGTGAAAACATTATAATAAAA----------------------------------------TACAACAAA---------------------------------------------------------------AAAATAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--AAACA--------------AATTC--A-----------ACTTG-AAGCAT----------------------------------------------------------------------------------------T-----T--------TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGTT--TATTATACAGTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AT------------------------------CTTAT----------ACATGCATTGAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.............................................................................................................................................................................................................................................ATATACGATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGTGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT----------ACATGCATTGAAACCAAGTT--T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
...........................................................................................................................................................................................................................................ATATATACGATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
droBip1
TATAT----ATATA---------------------------------------------------------------------------------------------------------------------------------TATATATATATAT----ATATA----TATA--TATA--------TATATAA---------------------------------------CTATG------------------------------------------------TATAC-------------------------------------------------ATGCA----------------------------------------------------------------------TAAGAGCCGGCAGACAGACATACATACACTCGGATGCTAATG------------------------------------------------------------------CATAATGTAACTTTAAGTACGACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----G--------TSizeHit CountTotal NormTotal
No Reads
dp5
ACATA----TTATATGCTAT----------------------------------------ATTATATATATACATA---------------------------------------------------------------TATATATATATA----T----------------ATATATATATA----TATAT-----------------------------------ATATGATTATATACATAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATACATATACATAACTTAT----------A------------------------------------------------------C----ATATATACATA--------------------------------------------------------------TATATATATATATTCTTA-----------------------------------CATAT-------------------------------------------------TATTAAAGACAAAAAACGTTGTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTTAA-----A--------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ACATTC---GTATATACTAC----------------------------------------GATATAAATA-------------------------------------------------------------------------TATGTATATATAT----ATATA------TATATATA------TATATGGT-----------------AGGTATAT-------T---------------------------------------------------------GGACGTATGTGCAT-----------------------------------------------------------------------------------------------------------------------------------------------ACGAAAACATA----TG-------------------------CATTGCAAGAACGTGAATATCATCCCGTTG--CCGGGATAATAATATGTATCTAAAAATATATGTA-------------------------------------------------------------------------------------------------------------------TATGCTATATATATTT---------------------------------------------------------------------------------------------------------------------------------------AAATAGACATTGA--ATCAA--------------AG-----------------CTTTGATT--------------------------------------------------------------------------------ACGCGTTTCGTTT-----T--------TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AATAT----ACATA-----------------------------------------------------------------------------------------------------------------------------TATATATATATA----T----ATATATATATA------TA----TATATGTGTTGACTCC-GATAT-----ATATATAT-------TAGT--------------GTATATAGTCATATATCCGACTCCAATACCCAATAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATA---------------------------------AATATTTCATAAAATATTAATATG-----ATATATTA-----------------------ATATATCCTA---------------------------------------------------------------------------------------------------------------AAATTCATAACGTTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAACATCCGTTTTTA-----T--------ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
ACGTG----TAAAACTTAAT----------------------------------------TA--TATATA-----------------------------------------------------------------------TATATATATA--TAT----ATATA----TATA--TATA--------TATGAAA---------------------------------------TTATGGAAT-----------------------------------------TGACGGATGGGAAT-----------A-----------TATAATATATATAT------ATATATATCTTCATTTTGGACTTAGCCACAAATTCAATCGCTATAAATAATATTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--CTCCA--------------AA------------------TTTG----------A--------------TATTTT---------GTGTGTT------------------------------------------------------TTGAGTGAATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................AAT-----------------------------------------TGACGGATGGGAAT-----------A-----------TAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.459000000000000000000000001007100000000000000000000000000000000000
...............................................................................................................................................................................................................................................AAT-----------------------------------------TGACGGATGGGAAT-----------A-----------TA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.306000000000000000000000000600000000000000000000000000000000000000
...........................................................................................................................................................................................................................................ATGGAAT-----------------------------------------TGACGGATGGGAAT-----------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.255000000000500000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................AAT-----------------------------------------TGACGGATGGGAAT-----------A-----------TATAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.204000000000000000000000000000000004000000000000000000000000000000
...............................................................................................................................................................................................................................................AAT-----------------------------------------TGACGGATGGGAAT-----------A-----------TATAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.153000000003000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................AT-----------------------------------------TGACGGATGGGAAT-----------A-----------TATAATATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.153000000000000300000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................AAT-----------------------------------------TGACGGATGGGAAT-----------A-----------TATAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102000020000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................AAT-----------------------------------------TGACGGATGGGAAT-----------A-----------TATAATAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102000010000000000000000000000000000000000001000000000000000000000
..........................................................................................................................................................................................................................................TATGGAAT-----------------------------------------TGACGGATGGGAAT-----------A-----------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102000000000000000000002000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................ATGGAAT-----------------------------------------TGACGGATGGGAAT-----------A-----------T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102000000101000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................AAT-----------------------------------------TGACGGATGGGAAT-----------A-----------TATAATATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000100000000000000000000000000000000000000
................................................................................................................................................................................................................................................AT-----------------------------------------TGACGGATGGGAAT-----------A-----------TATAATAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................TATGGAAT-----------------------------------------TGACGGATGGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................................A---------------------------------------TTATGGAAT-----------------------------------------TGACGGATGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................AAT-----------------------------------------TGACGGATGGGAAT-----------A-----------TATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................................................TATGGAAT-----------------------------------------TGACGGATGGGAAT-----------A-----------TAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................TA--------TATGAAA---------------------------------------TTATGGAAT-----------------------------------------TGACGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................TA--------TATGAAA---------------------------------------TTATGGAAT-----------------------------------------TGACGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000100000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................AAT-----------------------------------------TGACGGATGGGAAT-----------A-----------TATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000100000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TGACGGATGGGAAT-----------A-----------TATAATATATATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................TTATGGAAT-----------------------------------------TGACGGATGGGAAT-----------A-----------TAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000001000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................TATGGAAT-----------------------------------------TGACGGATGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000001000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................AAT-----------------------------------------TGACGGATGGGAAT-----------A-----------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................AAT-----------------------------------------TGACGGATGGGAAT-----------A-----------TATAATATATATAT------ATATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................37200.051000000000000000000000000000000000000000000000000000000000010000
..............................................................................................................................................................................................................................................GAAT-----------------------------------------TGACGGATGGGAAT-----------A-----------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000100000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................ACGGATGGGAAT-----------A-----------TATAATATATATAT------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................A---------------------------------------TTATGGAAT-----------------------------------------TGACGGATGGGAAT-----------A-----------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000010000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................GGAAT-----------------------------------------TGACGGATGGGAAT-----------A-----------T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000100000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................AAA---------------------------------------TTATGGAAT-----------------------------------------TGACGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000100000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................AAT-----------------------------------------TGACGGATGGGAAT-----------A-----------TATAATATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000000000000000010000000000000000
..........................................................................................................................................................................................................................................TATGGAAT-----------------------------------------TGACGGATGGGAAT-----------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................ATGGAAT-----------------------------------------TGACGGATGGGAAT-----------A-----------TACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................AAT-----------------------------------------TGACGGATGGGAAT-----------A-----------TATATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000001000000000000000000000000000000000000
droMoj3
ACTAA----AGGAGCTAGAT----------------------------------------CA--TATATTTATATA---------------------------------------------------------------TATATATATATATATAT----ATATA----TATA--TATA--------TATATGATCTACGCATTA-----ATAC-----CTTTCATTTTA-------TA---------------------------------------------------------------------------------TATAATATGTATAT------GTATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------GTACATACGAATATATATTTAATTAACTGCATATAAAGTATAT---------------------------------TCTTGATCAGGTCGACGAGCAGAGTCGTGTATCCGTGTCCGAGTGTCTGTCTGTCCGTATGTTTGAACGCATCGATTTCAGAAGATATA---------AGAGCTA----GAGACTTTTTTAAT--------------------------------------G------ATCGTAT---TTATAGCAGGGATGTCGAGGC------------TTCAAA-AATCCTTAACTCAC-----T--------CSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................TA--TATA--------TATATGATCTACGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21140.142200000
..............CTAGAT----------------------------------------CA--TATATTTATATA---------------------------------------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2080.131100000
...............................................................................................................................................................................................TGATCTACGCATTA-----ATAC-----CTTTCATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2690.111100000
...........................................................................................................................................................................................TATATGATCTACGCATTA-----ATAC-----CTTTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2790.111100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCATCGATTTCAGAAGATA................................................................................................................................................................21100.101100000
..................................................................................................................................................................................................TCTACGCATTA-----ATAC-----CTTTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.091100000
....................................................................................................................................................................................................TACGCATTA-----ATAC-----CTTTCATCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22120.081100000
...........................................................................................................................................................................................TATATGATCTACGCATTA-----ATAC-----CTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25160.061100000
.................................................................................................................................................................................TA--------TATATGATCTACGCATTA-----ATAC-----CT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26160.061000010
..............................................................................................................................................................................................ATGATCTACGCATTA-----ATAC-----C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20190.051100000
.............................................................................................................................................................................................TATGATCTACGCATTA-----ATAC-----CT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22190.051100000
............................................................................................................................................................................................ATATGATCTACGCATTA-----ATAC-----............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.051100000
...............................................................................................................................................................................................TGATCTACGCATTA-----ATAC-----CT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20190.051100000
.............................................................................................................................................................................................TATGATCTACGCATTA-----ATAC-----C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATATA---------AGAGCTA----GAGACTTT..................................................................................................................................24200.051100000
droGri2
TATAT----ATATA-----------------------------------------------------------------------------------------------------------------------------TATATATATATA----T----ATATATATATA------TA----TATATATATTATATAC-CATTA-----ATACACG-------------------------------------------------------------------CACAAATGTATAT-----------------------------------------------------------------------------------------------------------------------AAAGTAAAGTAAATTAAT----------------------G-----TTCGC----------A--TGGAT---ATGTG---------------------------------------------------------------GAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATGAACACA---------------------------------------------------TTACAGCGATCCAATCTT------GAATCAATTTTATATGATT--------ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:47 PM