ID:

dsi_27790

 Coordinate:

3r:24504785-24504934 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-39.6 -39.6 -39.6

Flybase annnotation

CDS [3r_24504935_24505078_-]; exon [3r_24504935_24505310_-]; intron [3r_24504319_24504934_-]

No Repeatable elements found

mature
  1. 2r:21197517-21197532 -
  2. 3l:4128779-4128794 +
  3. 3r:17617414-17617429 -
  4. 3r:23952749-23952764 -
  5. dsi_27790  3r:24504881-24504896 -
  6. x:5094828-5094843 +
  7. x:15154647-15154662 +
star

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGGACACGGAGTCGGACGACTTCGAGGACGGCTACGTGGAGGATGTGCAGGTGAGTGGGTCGGGTCGGCGATGCGGTTCGTCAGATAAAAAACGAGAGAAAAAAGTACACGTCAGTGGAAGCTACTAGAAGAAAAGGCGAACGCGGTTGCTGAGAGGGTAGGGGAAGACGGCTGGGGGGGGTGGTGCGGCCGGCTTCTTCGCTTTATGACCCACAATTAGCATGCGAGTGTGTCTCACTTTTCCAGCAAC
**************************************************.........((...(((((((((((.((((((.........((...........)).....(((((((...))))).))......))))))))).))))))))...))..(((((((.((((((............)))))).)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR902008
ovaries
..............GACGACTTCGAGGACGGCT......................................................................................................................................................................................................................... 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
..................ACTTCGAGGACGGCTACGTG.................................................................................................................................................................................................................... 20 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
.....................................................................................TACAAAACGAGAGAAAAA................................................................................................................................................... 18 1 4 1.25 5 0 0 0 1 2 0 0 1 0 1 0 0
.....................................................................................TACAAAACGAGAGAAAAAA.................................................................................................................................................. 19 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.....ACGGAGTCGGACGACTTCGAGGACGGC.......................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..............GACGACTTCGAGGACGGCTAC....................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................TCGAGGACGGCTACGTGGAG................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................TCGAGGACGGCTACGTGGAGT................................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............GACGACTTCGAGGACGGCTACGTGGA.................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...ACACGGAGTCGGACGAC...................................................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................TCGGGTGGCAGATGCGGTTCG.......................................................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.GGACACGGAGTCGGACGACTTCGAGGAC............................................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............CGGACGACTTCGAGGACGGCTACG...................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................CTACGTGGAGGATGTGCAGG....................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..................................CGTGGAGGATGTGCAGGTGA.................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................ACTTCGAGGACGGCTACGT..................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
............CGGACGACTTCGAGGACGGC.......................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................GACGGCTACGTGGAGGATGTGCAGGAG..................................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................TCGAGGACGGCTACGTGGAGGATGTG........................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................TACAAAACGAGAGAAAAAATT................................................................................................................................................ 21 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................TTGCGGTTCGTCGAATAAAAAA.............................................................................................................................................................. 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TGCGGTTCGTCGAAAAAAAAA.............................................................................................................................................................. 21 3 11 0.36 4 4 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TAGGGGAACGCGGCTGGTGGGG...................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................TGGATACAAAACGAGAGAAAAAA.................................................................................................................................................. 23 3 20 0.25 5 0 0 0 0 1 0 0 0 0 4 0 0
...............................................................................................................TCAGTGAAAGCTACGAGA......................................................................................................................... 18 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0
................................TACGTGGAGGATGTGCAGGAGGA................................................................................................................................................................................................... 23 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................GGTAAGGGAAGTCGGCTGG........................................................................... 19 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................TGAGTCGGTCGAGTAGGCGA................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................AAACGAGTGAAACAAGTAC.............................................................................................................................................. 19 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................CACATAAAGAACGAGAGAAAC.................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................GAACGAGGTTACTGAGA............................................................................................... 17 2 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................AAAACGAGAGAAAAAA.................................................................................................................................................. 16 0 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................CTCACTTTACCAGCA.. 15 1 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0
......................................................GTGGGTGGGGTCGGC..................................................................................................................................................................................... 15 1 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................TGCCGTACGTCAGACAAAA................................................................................................................................................................ 19 3 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................TTCGTGTGAAAAAAAACGAG.......................................................................................................................................................... 20 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................TACAAAACGAGAGAAAA.................................................................................................................................................... 17 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.......GGGATCGGACGACTTC................................................................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACCTGTGCCTCAGCCTGCTGAAGCTCCTGCCGATGCACCTCCTACACGTCCACTCACCCAGCCCAGCCGCTACGCCAAGCAGTCTATTTTTTGCTCTCTTTTTTCATGTGCAGTCACCTTCGATGATCTTCTTTTCCGCTTGCGCCAACGACTCTCCCATCCCCTTCTGCCGACCCCCCCCACCACGCCGGCCGAAGAAGCGAAATACTGGGTGTTAATCGTACGCTCACACAGAGTGAAAAGGTCGTTG
**************************************************.........((...(((((((((((.((((((.........((...........)).....(((((((...))))).))......))))))))).))))))))...))..(((((((.((((((............)))))).)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
....................................................................................................................................................................................CTCCACGGCGGCCGAAG..................................................... 17 2 18 0.39 7 7 0 0
....................................................................................................................................................................................CTCCACGGCGGCCGAAGGAGC................................................. 21 3 3 0.33 1 1 0 0
...................................................................................................................................................................................CCTCCACGGCGGCCGAAG..................................................... 18 2 8 0.13 1 1 0 0
............................................................................................GCTCTCTTTTTTCATT.............................................................................................................................................. 16 1 10 0.10 1 0 1 0
...................................................................................................................................................................................CCTCCACGGCGGCCGAA...................................................... 17 2 20 0.10 2 2 0 0
.................................................................................................................................................................................CCGCTCCACGGCGGCCGAAG..................................................... 20 3 11 0.09 1 1 0 0
..........................................................................................................................................................................................................................................AGTGAAAAGGTAGTTG 16 1 11 0.09 1 1 0 0
...........................................................................................................GTGCAGGCCCCTGCGATG............................................................................................................................. 18 3 13 0.08 1 0 1 0
......................................................CACGCAGCTCAGCCGCT................................................................................................................................................................................... 17 2 19 0.05 1 1 0 0
............................................................................................................................................................CCTTCCCATTCTGCCG.............................................................................. 16 2 20 0.05 1 1 0 0
..........................................................CAGCCCTGCCGCGACG................................................................................................................................................................................ 16 2 20 0.05 1 1 0 0
...........................................................................................................................................................ACCATCCCCTACTGCC............................................................................... 16 2 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:24504735-24504984 - dsi_27790 TGGAC------ACGGAGTCGGACGACTTCG---AGGACGGCTACGTGGAGGATGTGCAGGTGAGTGGG---------------TCGGGTCGGCGATGCGGTTCGTCAG----ATAAA---AA-ACGA-----------------------------GAG--AAAAAAGTACACGTCAGTG-----------------------------------------------GAAGCTACTAGAA---GAAA-AGGC--------GAA-CGCGGTTGCTG-------A--GAGGGTAGGGGA-------------------------------------------AGA--------------CG-------GC---------T-GGGG-GGGGTGGTGCGGCCGGCTT-CTT-CG-CTTTATGACCCAC--AATTAGCATGCGAGTGTGTCTCA---CTTTTCCAGCA----AC
droSec2 scaffold_4:4004945-4005188 - TGGAT------ACGGAGTCGGACGACTTCG---AGGACGGCTACGTGGAGGATGTGCAGGTGAGTGGG---------------T-----CGGCGATGCGGTTCGTCAG----ATAAA---AA-ACGA-----------------------------GAG--AAAAAAGTACACGTCAGTG-----------------------------------------------GAAGCTACTAGAA---GAAA-AGGC--------GAA-CGCGGTTGCTG-------G--G-GGGTAGGGGA-------------------------------------------AGA--------------GT-------GA---------T-GGGG-GGGGTGGTGCGGCCGGCTT-CTT-CG-CTTTATGACCCAC--AATTAGCATGCGAGTGTGTCTCA---CTTTTCCAGCA----AC
dm3 chr3R:25144742-25145002 - TGGAC------ACGGAGTCGGACGACTTCG---AGGATGGTTATGTGGAGGATGTGCAGGTGAGTAGT---------------TGGTC-CGACGATGCGGTTCGTAAG----ATAAAAA-AA-ACGA-----------------------------GAG--AAAAAAGTACACGTCAGTG-----------------------------------------------GAAGCTACTAGAA---GAAA-AGGC--------GAAACGCTATTGCTG-------T--GAGGGTAGGGGA-AG--------------------GT------------------------GGTT---GTGGGG-------GA---------G-GGGG-GTGTTGGTGCGGCCGGCTT-CTT-CG-CTTTATGACCCAC--AATTAGCATGCGAGTGTGTCTCA---CTTTTCCAGCA----AC
droEre2 scaffold_4820:2879364-2879625 + TGGGCCCGGATTCGGAGTCGGACGACTTCG---AGGACGGCTATGTGGAAGATGTGCAGGTGAGTAGG---------------TCG---CGGCGATGCCAGTCTCCAG----ATAAA---AA-ACGA-----------------------------GA---CAAAAAGTACACGTCAGTG-----------------------------------------------GAAGGTACTAGAA---CAAAAAGGA--------GAAACGCGCTTGTTG-------C--GATGGC-GGGGA-------------------------------------------A--GGG-GTTGCTGCGGGG-------GC---------T-G---GGGGGCGGTGCGGCCGGCTT-CTT-CG-CTTTGTGACCCAC--AATTAGCATGCGAGCGTGTCTCA---CTTTTCCAGCT----AC
droYak3 3R:21344120-21344386 + TGGGCCCGGATTCGGAGTCGGACGACTTCG---AGGACGGCTATGTGGAAGATGTGCAGGTGAGTGGG---------------TCGCG-CTGCGATGACAGTCGCCAG----ATAAA---AA-ACGA-----------------------------GAG--AAAAAAGTACACGTCAGTG-----------------------------------------------GAACGTACTAGAA---AAAAAA--AGC------AAATCGCGCTTGTTG-------A--GTTGGTAGGGAA----------------------------------------------TGG-GTTGCTGAGGGG-------GC---------C-GGGG-GGGTCGTTGCGGCCGGCTT-CTT-CG-CTTTATGACCCAC--AATTAGCATGCGAGTGTGTCTCA---CTTTTCCAGCA----AG
droEug1 scf7180000409787:427420-427666 + TGGGTCCGGAATCGGACTCCGACGACTTCG---AGGATGGATATGTGGAAGATGTTCAGGTTAGTT-----------------------CTGCTTTGCGATACGAAAG----ATAAAGAAAA-ATGA-----------------------------GA---AAAAAGGTACACGTCAGTGGAA--------------------------------------------GAAGCTACTAGAACGAAAAA-ATGAGCATGGGCGAA-----------------GT----------------------------------------------------------------GATGAGGATGAGC-------GT-----------G---GGGCGGGGGGCGGCCGGCTT-TTT-CA-CTTTATGACCCAC--AATTAGCATGTGAGTGTGTTTAA---CTTTTCCACCG----AC
droBia1 scf7180000302136:2982638-2982878 + TGGGC------TCGGAGTCGGACGACTTCG---AGGACGGATATGTGGAAGATGTTCAGGTGAGTG-----------------------CGGCGCTGCGATCCGCAAG----TTAAA---AAAGC-------------------------------GA---GAAAAAGTACACGTCAGTGGAA--------------------------------------------GAAGCTACTAGAA---AAA--AGCAGCATGCGC-------CGAT-----------------------------------------------------------GGAGAGAG-----GGG-GTTGC----GGG-------TC---------A-GGGG-GGGCTGGCGCGGCCGGCTT-TTT-CA-GTTTATGACCCAC--AATTAGCATGCCAGTGTGTGTGA---CTTTTCCAGCG----GC
droTak1 scf7180000415765:1063348-1063592 + TGGGT------TCGGAATCGGACGACTTCG---AGGATGGATATGTGGAAGATGTTCAGGTGAGTT-----------------------TGCCGCTGCGATCCGAAAG----ATAAA---AAAACGA-----------------------------GAGAAAAAAAAGTACACGTCAGTGGAA--------------------------------------------GAAGCTACTAGAA---AAAA-AGCAGCATGGGC-------GGTT---------------------------------------------------------------------------GGTTGGTGGGAGG-------GA-----------G---GGGGGTGGTGCGGCCGGCTT-TTT-CA-CTCTATGACCCAC--AATTAGCATGCTAGTGTGTCTGAATGCTTTTCCACCGAGCAAC
droEle1 scf7180000491280:1345241-1345469 - CGGGT------CCGGAATCAGATGACTTCG---AGGATGGATATGTGGAAGATGTTCAGGTGAGTG-----------------------CGGCGCTGCGATCCGAAAG----ATAAA---A----GA-----------------------------GTG--TAAAAAGTACACGTCAGTG-----------------------------------------------GAAGCTACTAGAA---A-------AGCATGGTT----TTCGGTTGCT--------------------------------------------------------GGAGAGGGGAAGA------------------------------------GAG-GTGGGTGGTGCGGCCGGCTT-TTTTCA-CTTGATGACCCAC--AATTAGCATGCGAGTGTGTTTCG--GCGTTTCCACCG------
droRho1 scf7180000776803:59587-59814 - CGGGT------CCGGAATCAGATGACTTCG---AGGATGGATATGTGGAAGATGTTCAGGTTAGTG-----------------------CGGCGTTGCGATCCGAAAG----ATAAA---A----GA-----------------------------GAG--CAAGAAGTACACGTCAGTA-----------------------------------------------GAAGCTACTAGAA---A-------AGCATGGTT------------TTG-------G--G-CGGT---------------------------------------GGAGAGGGGA--------------GA-----------------------AAC--GGGGTGGTGTGGCCGGCTT-TTT-CAACTTTATGACCCAC--AATTAGCATGCGAGTGTGTTTCT--GAGTTTCCACAG----AC
droFic1 scf7180000453776:446604-446827 - TGGGT------TCGGAATCAGATGACTTCG---AGGACGGTTATGTGGAAGATGTGCAGGTGAGTA-----------------------CCGCCATGCGATCCGAAAG----ATAAA---A----GA-----------------------------GAG---AAAAAGTACACGTCAGTA-----------------------------------------------GAAGCTACTAGAA---G-------AGCATGGGCGGA-GGT-------------------------------------------------------------------------------GGTTAATAAGGGG-------GC-----------A---GGGGGTGGTGCGGCCGGCGT-TTT-CG-TTTTATGACCCAC--AATTAGCATGCGAGTGTGGTTGA---GTTTTCCACCG----AC
droKik1 scf7180000302466:313605-313851 + CAGCC------ACTGACTCCGATGACTTCG---AGGATGGCTTTGTGGAAGATGTTCAGGTGAGT------------------------------TGCTATCCAAAAGCAAGAA-AA---AA-ACAC-----------------------------GAG--AAAAAAGTACACGTCAGTGT-G--------------------------------------------GAAGCGACTAGAA---C-------AGCACG--CTGA-TGT--------GTTGAGC-------------AGCGG-----------------------------------------------GTGGTTGAGTGGGGCTAGCGCGGGGTGCGGT-GAGG-GGGGCAGAGCGGCCGGCTT-TTC-GATTTTTATGACCCAAAAAATTAGCATGTGAG-------------TTTTTCAGTG----GG
droAna3 scaffold_12911:4838605-4838858 - dan_444 CGACA------GCGGAGTCTGACGATTTCG---AGGACGGCTATGTGGAAGATGTGCCGGTGAGTT------------------------------T---------CG----ATAAAAAAA--AAGAGTGGA------------------------GA---AAAAAAGTACACGTCAGTGGCA-G------------CA----------------------------GAAGCTACTAGAA---G-------AGCATGT-----------------GGTAAGG-------------GGGGAGTGATGGAG--CACGAGTGGGTCAGTCGCCGAAAGGGGGA--------------GG----------------------A-G---CAGGTGGTGCGGCCGGCGT-TTT-GATTTTTATGACCCAC--AATTAGCATGTGCTCGTGTGTGA---GTTTTCCAGTG----AT
droBip1 scf7180000396640:1666435-1666684 - CGACA------GCGGAGTCCGACGATTTCG---AGGACGGCTATGTGGAAGATGTGCCGGTGAGT------------------------------TGCG-------------ATAAAAAAA--AA--GTGGA------------------------GAA--AAAAAAGTACACGTCAGTGGCA--------------------------------------------GAAGCTACTAGAA---G-------AGCATGT-----------------GGTAAGG-------------GGTGAGGGCTGGAGGCCAAGAGTGCGACGGCCGCCGAAAGGGGGA--------------GG----------------------A-G---CAGGTGGTGCGGCCGGCGT-TTT-GATTTTTATGACCCAC--AATTAGCATGCTCGTGTG--TGA---GTTTTCCAGTG----AT
dp5 2:1996864-1997080 - TCGGT------GTCGATGCCGACGACTTTG---AGGATGGCCAAGTCGAAGATGTTCAGGTGAGAGCGCAAATATCGCACA---------------------------------------A--AT--GTGTAGACCGGCGG---GGGTAGCCG---GTG--AGAAAAGTACACGTCAGTGGAA--------------------------------------------GAAGCGTCTAGAA---TAT----------T-------------T----GGTGAG--------------------------------------------------------------------------------------------------GGGT-GGGCCGGGCCGGCCCGGTCACCC-GTTGTTTATAGCCCCC--AATTAACATTT----ATCTGTCA---TTTTCCTA---------
droPer2 scaffold_7:2163716-2163839 - TCGGT------GTCGATGCCGACGATTTTG---AGGATGGCCAAGTCGAAGATGTTCAGGTGAGAGCGCAAATATCGCACA---------------------------------------A--AT--GTGTAGACCGGCGG---GGGTAGCCG---GTG--AGAAAAGTACACGTCAGTG-----------------------------------------------GAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004902:7910382-7910690 - CCGAA------GTGGAAGCCGATGATTTTG---AAGATGGCTTTGTGGAGGATGTTCAGGTGAGGCC-AAAATATCATTTAAAAGG---CGGTAATGCT--TCTTCTG----GTCAG--------------------GGAG---GGGTT-------AAG--AGGCAAGTACACGTCAGAGGACAGAGAGAGAGTAAGCAAGAGCGAGAGAAAGAAACATCGAGAAAGAAAGGAAGGAGAA---AAA--AAACGTAT---------GCGGCTTT--GCTCATCTGAG-GGGT-GGAAA-------------------AAACGTCA---------------------G-CTTGCTGAGAGG-------GA-----------G---GGGTGAGGTACGGGTTGGTGAT-T-T--GTTTATGACCCAC--AATTAACACA-GAGTGAGTTT----------------------
droVir3 scaffold_12822:2455475-2455526 - CGGA------------CATCGACGACTTTGATGACGACGGGATCGTTGAAGATGTGCAGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14624:3368910-3369041 - TTGA------------------------CG---ACGACGGACTCGTCGAAGATGTGCAGGTGAGCAAA---------------ACACA-CACACACACATTTCTTTAT----TTATA------ATAAGTAAA--TATGTATGTATGGCAGCCGGCGCAC--AAAAAAGTACACGTCAGTA-----------------------------------------------GCAACAACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGGAC------ACGGAGTCGGACGACTTCG---AGGACGGCTACGTGGAGGATGTGCAGGTGAGTGGG---------------TCGGGTCGGCGATGCGGTTCGTCAG----ATAAA---AA-ACGA-----------------------------GAG--AAAAAAGTACACGTCAGTG-----------------------------------------------GAAGCTACTAGAA---GAAA-AGGC--------GAA-CGCGGTTGCTG-------A--GAGGGTAGGGGA-------------------------------------------AGA--------------CG-------GC---------T-GGGG-GGGGTGGTGCGGCCGGCTT-CTT-CG-CTTTATGACCCAC--AATTAGCATGCGAGTGTGTCTCA---CTTTTCCAGCA----ACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................GACGACTTCG---AGGACGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000000000
........................ACTTCG---AGGACGGCTACGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200000000002000000
...........ACGGAGTCGGACGACTTCG---AGGACGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
....................GACGACTTCG---AGGACGGCTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
...........................TCG---AGGACGGCTACGTGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
...........................TCG---AGGACGGCTACGTGGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
....................GACGACTTCG---AGGACGGCTACGTGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000001000
...AC------ACGGAGTCGGACGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000010000000000
.GGAC------ACGGAGTCGGACGACTTCG---AGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00110000000000000000
..................CGGACGACTTCG---AGGACGGCTACG........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000001000000000
........................................CTACGTGGAGGATGTGCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001000000000000
...........................................CGTGGAGGATGTGCAGGTGA......................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
........................ACTTCG---AGGACGGCTACGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
..................CGGACGACTTCG---AGGACGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
...........................TCG---AGGACGGCTACGTGGAGGATGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000100000
....................................................................................................................A---AA-ACGA-----------------------------GAG--AAAAAA..............................................................................................................................................................................................................................................................................................................1670.14100000000001000000
droSec2
TGGAT------ACGGAGTCGGACGACTTCG---AGGACGGCTACGTGGAGGATGTGCAGGTGAGTGGG---------------T-----CGGCGATGCGGTTCGTCAG----ATAAA---AA-ACGA-----------------------------GAG--AAAAAAGTACACGTCAGTG-----------------------------------------------GAAGCTACTAGAA---GAAA-AGGC--------GAA-CGCGGTTGCTG-------G--G-GGGTAGGGGA-------------------------------------------AGA--------------GT-------GA---------T-GGGG-GGGGTGGTGCGGCCGGCTT-CTT-CG-CTTTATGACCCAC--AATTAGCATGCGAGTGTGTCTCA---CTTTTCCAGCA----ACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................ACGGCTACGTGGAGGATGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
.........................CTTCG---AGGACGGCTACGTGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
...AT------ACGGAGTCGGACGACTTCG---AGGACGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100
.........................CTTCG---AGGACGGCTACGTGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
.....................................CGGCTACGTGGAGGATGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
dm3
TGGAC------ACGGAGTCGGACGACTTCG---AGGATGGTTATGTGGAGGATGTGCAGGTGAGTAGT---------------TGGTC-CGACGATGCGGTTCGTAAG----ATAAAAA-AA-ACGA-----------------------------GAG--AAAAAAGTACACGTCAGTG-----------------------------------------------GAAGCTACTAGAA---GAAA-AGGC--------GAAACGCTATTGCTG-------T--GAGGGTAGGGGA-AG--------------------GT------------------------GGTT---GTGGGG-------GA---------G-GGGG-GTGTTGGTGCGGCCGGCTT-CTT-CG-CTTTATGACCCAC--AATTAGCATGCGAGTGTGTCTCA---CTTTTCCAGCA----ACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....C------ACGGAGTCGGACGACTTCG---AGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................25122.002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004171000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AC------ACGGAGTCGGACGACTTCG---AGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................26115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000393000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....C------ACGGAGTCGGACGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................1918.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100023000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AC------ACGGAGTCGGACGACTTCG---A...................................................................................................................................................................................................................................................................................................................................................................................................................................................2218.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000152000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AC------ACGGAGTCGGACGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2017.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100110100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
...AC------ACGGAGTCGGACGACTTCG---AGGATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....C------ACGGAGTCGGACGACTTCG---....................................................................................................................................................................................................................................................................................................................................................................................................................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....C------ACGGAGTCGGACGACTTCG---AGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AC------ACGGAGTCGGACGACTTCG---AGGATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000122000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AC------ACGGAGTCGGACGACTTCG---AGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AC------ACGGAGTCGGACGACTTCG---AG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....C------ACGGAGTCGGACGACTTCG---AGGATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................AGGTGAGTAGT---------------TGGTC-CG..........................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
TGGAC------ACGGAGTCGGACGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............CGGAGTCGGACGACTTCG---AGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GGAC------ACGGAGTCGGACGACTTCG---AGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................GTAGT---------------TGGTC-CGACGATGCGG.................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CGGACGACTTCG---AGGATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TGGAC------ACGGAGTCGGACGACTTCG---AGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................AGT---------------TGGTC-CGACGATGCGGTT...............................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................T---GTGGGG-------GA---------G-GGGG-GTGTA................................................................................1922.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GGAC------ACGGAGTCGGACGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................GT------------------------GGTT---GTGGGG-------GA---------G-GGGG-GT...................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000000000000000
................................................................................................................................................................................AGTG-----------------------------------------------GAAGCTACTAGAA---GAAA-AGG..........................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...AC------ACGGAGTCGGACGACTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....C------ACGGAGTCGGACGACTTCG---AG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AC------ACGGAGTCGGACGACTTCG---AGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CGGACGACTTCG---AGGATGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ACTTCG---AGGATGGTTATGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.................................AGGATGGTTATGTGGAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................GTC-CGACGATGCGGTTCGTA...........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................C--AATTAGCATGCGAGTGTGTC.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
.GGAC------ACGGAGTCGGACGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
..........................................................................................................................................................................................................................................................................................................AG--------------------GT------------------------GGTT---GTGGGG-------GA---------G-G.........................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.......................GACTTCG---AGGATGGTTATGTGGAGGAT................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CGGACGACTTCG---AGGATGGTTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CGACTTCG---AGGATGGTTATGTGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GGAGTCGGACGACTTCG---AGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................T------------------------GGTT---GTGGGG-------GA---------G-GGGG-GT...................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CGGACGACTTCG---AGGATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AC------ACGGAGTCGGACGACTTCG---....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................GCAGGTGAGTAGT---------------TGGTC-CGA.........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........ACGGAGTCGGACGACTTCG---AGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................AACGCTATTGCTG-------T--GAGGG...................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
....C------ACGGAGTCGGACGACTTCG---A...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................ATGGTTATGTGGAGGATGTGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TGGAC------ACGGAGTCGGACGACTTCG---....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ACGGAGTCGGACGACTTCG---AGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................GTGCAGGTGAGTAGT---------------TGGTC-CG..........................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...AC------ACGGAGTCGGACGACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................C--AATTAGCATGCGAGTGTGTCT......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..............................................................AGTAGT---------------TGGTC-CGACGATGCGGTTCG.............................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...........................................................................................................................................................................................................................................................................................................G--------------------GT------------------------GGTT---GTGGGG-------GA---------G-GGGG-GTG..................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................GGTGAGTAGT---------------TGGTC-CGACGATG....................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........................................................AGGTGAGTAGT---------------TGGTC-CGACGAT.....................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................GTGAGTAGT---------------TGGTC-CGACGATGCGGTA...............................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................CGGACGACTTCG---AGGATGGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CTTCG---AGGATGGTTATGTGGAGGATC...............................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................GTAGT---------------TGGTC-CGACGATGCG..................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
....C------ACGGAGTCGGACGACTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................T--GAGGGTAGGGGA-AG--------------------GT------------------------C..........................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
droEre2
TGGGCCCGGATTCGGAGTCGGACGACTTCG---AGGACGGCTATGTGGAAGATGTGCAGGTGAGTAGG---------------TCG---CGGCGATGCCAGTCTCCAG----ATAAA---AA-ACGA-----------------------------GA---CAAAAAGTACACGTCAGTG-----------------------------------------------GAAGGTACTAGAA---CAAAAAGGA--------GAAACGCGCTTGTTG-------C--GATGGC-GGGGA-------------------------------------------A--GGG-GTTGCTGCGGGG-------GC---------T-G---GGGGGCGGTGCGGCCGGCTT-CTT-CG-CTTTGTGACCCAC--AATTAGCATGCGAGCGTGTCTCA---CTTTTCCAGCT----ACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................CGGACGACTTCG---AGGACGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0021000100
............CGGAGTCGGACGACTTCG---AGGACGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020100100
.........................CTTCG---AGGACGGCTATGTGGAAGAT................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
......................................GGCTATGTGGAAGATGTGC............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
..................CGGACGACTTCG---AGGACGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
droYak3
TGGGCCCGGATTCGGAGTCGGACGACTTCG---AGGACGGCTATGTGGAAGATGTGCAGGTGAGTGGG---------------TCGCG-CTGCGATGACAGTCGCCAG----ATAAA---AA-ACGA-----------------------------GAG--AAAAAAGTACACGTCAGTG-----------------------------------------------GAACGTACTAGAA---AAAAAA--AGC------AAATCGCGCTTGTTG-------A--GTTGGTAGGGAA----------------------------------------------TGG-GTTGCTGAGGGG-------GC---------C-GGGG-GGGTCGTTGCGGCCGGCTT-CTT-CG-CTTTATGACCCAC--AATTAGCATGCGAGTGTGTCTCA---CTTTTCCAGCA----AGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................CGGACGACTTCG---AGGACGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................GGGG-------GC---------C-GGGG-GGGTCGTTGCGGCCGG.....................................................................2711.00100100000000
................GTCGGACGACTTCG---AGGACGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.................................................AGATGTGCAGGTGAGTGGG---------------..................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000
.......................GACTTCG---AGGACGGCTATGTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
droEug1
TGGGTCCGGAATCGGACTCCGACGACTTCG---AGGATGGATATGTGGAAGATGTTCAGGTTAGTT-----------------------CTGCTTTGCGATACGAAAG----ATAAAGAAAA-ATGA-----------------------------GA---AAAAAGGTACACGTCAGTGGAA--------------------------------------------GAAGCTACTAGAACGAAAAA-ATGAGCATGGGCGAA-----------------GT----------------------------------------------------------------GATGAGGATGAGC-------GT-----------G---GGGCGGGGGGCGGCCGGCTT-TTT-CA-CTTTATGACCCAC--AATTAGCATGTGAGTGTGTTTAA---CTTTTCCACCG----ACSizeHit CountTotal NormTotal
No Reads
droBia1
TGGGC------TCGGAGTCGGACGACTTCG---AGGACGGATATGTGGAAGATGTTCAGGTGAGTG-----------------------CGGCGCTGCGATCCGCAAG----TTAAA---AAAGC-------------------------------GA---GAAAAAGTACACGTCAGTGGAA--------------------------------------------GAAGCTACTAGAA---AAA--AGCAGCATGCGC-------CGAT-----------------------------------------------------------GGAGAGAG-----GGG-GTTGC----GGG-------TC---------A-GGGG-GGGCTGGCGCGGCCGGCTT-TTT-CA-GTTTATGACCCAC--AATTAGCATGCCAGTGTGTGTGA---CTTTTCCAGCG----GCSizeHit CountTotal NormTotal
No Reads
droTak1
TGGGT------TCGGAATCGGACGACTTCG---AGGATGGATATGTGGAAGATGTTCAGGTGAGTT-----------------------TGCCGCTGCGATCCGAAAG----ATAAA---AAAACGA-----------------------------GAGAAAAAAAAGTACACGTCAGTGGAA--------------------------------------------GAAGCTACTAGAA---AAAA-AGCAGCATGGGC-------GGTT---------------------------------------------------------------------------GGTTGGTGGGAGG-------GA-----------G---GGGGGTGGTGCGGCCGGCTT-TTT-CA-CTCTATGACCCAC--AATTAGCATGCTAGTGTGTCTGAATGCTTTTCCACCGAGCAACSizeHit CountTotal NormTotal
No Reads
droEle1
CGGGT------CCGGAATCAGATGACTTCG---AGGATGGATATGTGGAAGATGTTCAGGTGAGTG-----------------------CGGCGCTGCGATCCGAAAG----ATAAA---A----GA-----------------------------GTG--TAAAAAGTACACGTCAGTG-----------------------------------------------GAAGCTACTAGAA---A-------AGCATGGTT----TTCGGTTGCT--------------------------------------------------------GGAGAGGGGAAGA------------------------------------GAG-GTGGGTGGTGCGGCCGGCTT-TTTTCA-CTTGATGACCCAC--AATTAGCATGCGAGTGTGTTTCG--GCGTTTCCACCG------SizeHit CountTotal NormTotal
No Reads
droRho1
CGGGT------CCGGAATCAGATGACTTCG---AGGATGGATATGTGGAAGATGTTCAGGTTAGTG-----------------------CGGCGTTGCGATCCGAAAG----ATAAA---A----GA-----------------------------GAG--CAAGAAGTACACGTCAGTA-----------------------------------------------GAAGCTACTAGAA---A-------AGCATGGTT------------TTG-------G--G-CGGT---------------------------------------GGAGAGGGGA--------------GA-----------------------AAC--GGGGTGGTGTGGCCGGCTT-TTT-CAACTTTATGACCCAC--AATTAGCATGCGAGTGTGTTTCT--GAGTTTCCACAG----ACSizeHit CountTotal NormTotal
No Reads
droFic1
TGGGT------TCGGAATCAGATGACTTCG---AGGACGGTTATGTGGAAGATGTGCAGGTGAGTA-----------------------CCGCCATGCGATCCGAAAG----ATAAA---A----GA-----------------------------GAG---AAAAAGTACACGTCAGTA-----------------------------------------------GAAGCTACTAGAA---G-------AGCATGGGCGGA-GGT-------------------------------------------------------------------------------GGTTAATAAGGGG-------GC-----------A---GGGGGTGGTGCGGCCGGCGT-TTT-CG-TTTTATGACCCAC--AATTAGCATGCGAGTGTGGTTGA---GTTTTCCACCG----ACSizeHit CountTotal NormTotal
No Reads
droKik1
CAGCC------ACTGACTCCGATGACTTCG---AGGATGGCTTTGTGGAAGATGTTCAGGTGAGT------------------------------TGCTATCCAAAAGCAAGAA-AA---AA-ACAC-----------------------------GAG--AAAAAAGTACACGTCAGTGT-G--------------------------------------------GAAGCGACTAGAA---C-------AGCACG--CTGA-TGT--------GTTGAGC-------------AGCGG-----------------------------------------------GTGGTTGAGTGGGGCTAGCGCGGGGTGCGGT-GAGG-GGGGCAGAGCGGCCGGCTT-TTC-GATTTTTATGACCCAAAAAATTAGCATGTGAG-------------TTTTTCAGTG----GGSizeHit CountTotal NormTotal
No Reads
droAna3
CGACA------GCGGAGTCTGACGATTTCG---AGGACGGCTATGTGGAAGATGTGCCGGTGAGTT------------------------------T---------CG----ATAAAAAAA--AAGAGTGGA------------------------GA---AAAAAAGTACACGTCAGTGGCA-G------------CA----------------------------GAAGCTACTAGAA---G-------AGCATGT-----------------GGTAAGG-------------GGGGAGTGATGGAG--CACGAGTGGGTCAGTCGCCGAAAGGGGGA--------------GG----------------------A-G---CAGGTGGTGCGGCCGGCGT-TTT-GATTTTTATGACCCAC--AATTAGCATGTGCTCGTGTGTGA---GTTTTCCAGTG----ATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................GGGGGA--------------GG----------------------A-G---CAGGTGGTGCGG.........................................................................2212.002100001
..............................................................................................................................................................................................................................................................................................................................................GGGGGA--------------GG----------------------A-G---CAGGTGGTGCGGCC.......................................................................2411.001100000
..............................................................................................................................................................................................................................................................................................................................................GGGGGA--------------GG----------------------A-G---CAGGTGGTGCGGCCGGC....................................................................2711.001000001
.......................................GCTATGTGGAAGATGTGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.............................................................................................................................................................................................................................................................................................................TGATGGAG--CACGAGTGGGTCAGTCGC............................................................................................................................................2611.001000001
..........................TTCG---AGGACGGCTATGTGGAAGATGTGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................2911.001010000
............................................................................................................................................................................................................................................................................................................................................................................................G---CAGGTGGTGCGGCCGGCGT-TTT-GA...........................................................2511.001000001
..............................................................................................................................................................................................................................................................................................................GATGGAG--CACGAGTGGGTCAGTCG.............................................................................................................................................2411.001000001
............................CG---AGGACGGCTATGTGGAAGAT................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100
........................................CTATGTGGAAGATGTGCCGGA........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
................GTCTGACGATTTCG---AGGACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
..............................................................................................................................................................................................................................................................................................................................................GGGGGA--------------GG----------------------A-G---CAGGTGGTGCG..........................................................................2111.001100000
.............................................................................................................................................................................................................................................................................................................................................AGGGGGA--------------GG----------------------A-G---CAGGTGA..............................................................................1840.251100000
droBip1
CGACA------GCGGAGTCCGACGATTTCG---AGGACGGCTATGTGGAAGATGTGCCGGTGAGT------------------------------TGCG-------------ATAAAAAAA--AA--GTGGA------------------------GAA--AAAAAAGTACACGTCAGTGGCA--------------------------------------------GAAGCTACTAGAA---G-------AGCATGT-----------------GGTAAGG-------------GGTGAGGGCTGGAGGCCAAGAGTGCGACGGCCGCCGAAAGGGGGA--------------GG----------------------A-G---CAGGTGGTGCGGCCGGCGT-TTT-GATTTTTATGACCCAC--AATTAGCATGCTCGTGTG--TGA---GTTTTCCAGTG----ATSizeHit CountTotal NormTotal
No Reads
dp5
TCGGT------GTCGATGCCGACGACTTTG---AGGATGGCCAAGTCGAAGATGTTCAGGTGAGAGCGCAAATATCGCACA---------------------------------------A--AT--GTGTAGACCGGCGG---GGGTAGCCG---GTG--AGAAAAGTACACGTCAGTGGAA--------------------------------------------GAAGCGTCTAGAA---TAT----------T-------------T----GGTGAG--------------------------------------------------------------------------------------------------GGGT-GGGCCGGGCCGGCCCGGTCACCC-GTTGTTTATAGCCCCC--AATTAACATTT----ATCTGTCA---TTTTCCTA---------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....T------GTCGATGCCGACGACTTTG---AGGATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000010
..............................................................................................................................................................................................................................................................................T----GGTGAG--------------------------------------------------------------------------------------------------GGGT-GGGCCGGG.............................................................................1911.0010100000000
............................TG---AGGATGGCCAAGTCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010000
..............GATGCCGACGACTTTG---AGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............GATGCCGACGACTTTG---AGGATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100000
..............................................................................................................................................................G--AGAAAAGTACACGTCAGT..................................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
TCGGT------GTCGATGCCGACGATTTTG---AGGATGGCCAAGTCGAAGATGTTCAGGTGAGAGCGCAAATATCGCACA---------------------------------------A--AT--GTGTAGACCGGCGG---GGGTAGCCG---GTG--AGAAAAGTACACGTCAGTG-----------------------------------------------GAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............GATGCCGACGATTTTG---AGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
....................GACGATTTTG---AGGATGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
.CGGT------GTCGATGCCGACGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...............ATGCCGACGATTTTG---AGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droWil2
CCGAA------GTGGAAGCCGATGATTTTG---AAGATGGCTTTGTGGAGGATGTTCAGGTGAGGCC-AAAATATCATTTAAAAGG---CGGTAATGCT--TCTTCTG----GTCAG--------------------GGAG---GGGTT-------AAG--AGGCAAGTACACGTCAGAGGACAGAGAGAGAGTAAGCAAGAGCGAGAGAAAGAAACATCGAGAAAGAAAGGAAGGAGAA---AAA--AAACGTAT---------GCGGCTTT--GCTCATCTGAG-GGGT-GGAAA-------------------AAACGTCA---------------------G-CTTGCTGAGAGG-------GA-----------G---GGGTGAGGTACGGGTTGGTGAT-T-T--GTTTATGACCCAC--AATTAACACA-GAGTGAGTTT----------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................GATGATTTTG---AAGATGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................1813.00300030
..........................TTTG---AAGATGGCTTTGTGGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................2213.00300300
...................CGATGATTTTG---AAGATGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200110
...........................TTG---AAGATGGCTTTGTGGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200020
........................ATTTTG---AAGATGGCTTTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200020
.............................G---AAGATGGCTTTGTGGAGGAT................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00201100
...............................................................................................................................................................................................................................................................................................................................................................................A-----------G---GGGTGAGGTACGGGTTGGTGAT-...............................................................2411.00100010
....................GATGATTTTG---AAGATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
...................................................................................................................................................................................................................................................................................................................................................................GAGG-------GA-----------G---GGGTGAGGTACGGG........................................................................2111.00100001
...................................................................................................................................................................................................................................................................................................................................................................GAGG-------GA-----------G---GGGTGAGGTACGGGTTG.....................................................................2411.00101000
........................ATTTTG---AAGATGGCTTTGTGGAGGAT................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
..........................TTTG---AAGATGGCTTTGTGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
..........................TTTG---AAGATGGCTTTGTGGAGGAT................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
..........................TTTG---AAGATGGCTTTGTGGAGGATGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
...........................TTG---AAGATGGCTTTGTGGAGGATGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
...................................GATGGCTTTGTGGAGGATGTTCAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
.CGAA------GTGGAAGCCGATGATTTTG---AAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
............TGGAAGCCGATGATTTTG---AAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
...............................................................................................................................................................................................................................................................................................................................................................................A-----------G---GGGTGAGGTACGGGTTGGTGA.................................................................2311.00100010
...................................GATGGCTTTGTGGAGGAT................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
........................................CTTTGTGGAGGATGTTCAGGATG......................................................................................................................................................................................................................................................................................................................................................................................................................2320.50101000
...................................................................................................................................................................................................................................AAAGGAAGGAGAA---AAA--AAAA.........................................................................................................................................................................................................................20160.06100010
droVir3
CGGA------------CATCGACGACTTTGATGACGACGGGATCGTTGAAGATGTGCAGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................GACTTTGATGACGACGGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000001000000000000000000001000000000000000000000000000000000
......................................GGGATCGTTGAAGATGTGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.......................GACTTTGATGACGACGGGATCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000001000000000000000000000000000000000000000000000000000
.................ATCGACGACTTTGATGACGACGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001000000000000000000000000000000000000000000000000000000000
.......................GACTTTGATGACGACGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000100000000000000000000000000000000000000000000000000000
.........................CTTTGATGACGACGGGATCGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000100000000000000000000000000000
.......................GACTTTGATGACGACGGGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001000000000000000000000000000000000000000000000000000000000
.........................CTTTGATGACGACGGGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000001000000000000000000000000000000000000000000
.....................................CGGGATCGTTGAAGATGTGCAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000001000000000000000000000000000000000000000000
.......................GACTTTGATGACGACGGGATCGTTGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000010000000000000000000000000000000000000000
.......................GACTTTGATGACGACGGGATCGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
.......................GACTTTGATGACGACGGGATCGTTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000010000000000000000000000000000000000000000
......................CGACTTTGATGACGACGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
.......................GACTTTGATGACGACGGGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
..................................CGACGGGATCGTTGAAGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
....................GACGACTTTGATGACGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000001000000000000000000000000000000
.........................................ATCGTTGAAGATGTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000001000000000000000000000000000000000000
droGri2
TTGA------------------------CG---ACGACGGACTCGTCGAAGATGTGCAGGTGAGCAAA---------------ACACA-CACACACACATTTCTTTAT----TTATA------ATAAGTAAA--TATGTATGTATGGCAGCCGGCGCAC--AAAAAAGTACACGTCAGTA-----------------------------------------------GCAACAACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................ACGGACTCGTCGAAGATGTGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110

Generated: 05/19/2015 at 12:45 AM