ID:

dsi_27789

 Coordinate:

3l:7260483-7260549 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_7260185_7260482_-]; exon [3l_7260152_7260482_-]; CDS [3l_7260550_7261440_-]; exon [3l_7260550_7261440_-]; intron [3l_7260483_7260549_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------##################################################
ACCCTCCACTCCTATGGCAACTACCTTCTGTATCCTTGGGGCTGGACCTCGTAAGTGTCATTGTTGAATATCCGCATCTAGTCCCTCATTGCTAACCCATCCCCAATCTTATTGCAGTGCTCTGCCCAGCAGCTGGCGCGACAACGATGAGGTGGCTCAAGCTGGAG
**************************************************((((.....((((..((......(((.............))).......))..))))....))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR902009
testis
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
........................CTTCTGTATCCTTGGGGCTG........................................................................................................................... 20 0 1 5.00 5 1 4 0 0 0 0 0 0
.....................................................AGTGTCATTGTTGTA................................................................................................... 15 1 16 3.44 55 0 0 55 0 0 0 0 0
..................AACTACCTTCTGTATCCTTGGGGCT............................................................................................................................ 25 0 1 2.00 2 2 0 0 0 0 0 0 0
.........................................................................................................................................GCGACAACGATGAGGTGGCT.......... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
........................CTTCTGTATCCTTGGGGCT............................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0
........................CTTCTGTATCCTTGGGGCGG........................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................AGCAGCTGGCGCGACAACGATGA................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0
..............................................................................................................................................AACGATGAGGTGGCTCAAGCTGGA. 24 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................CTGTATCCTTGGGGCTGGACCT...................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0
....................CTACCTTCTGTATCCTTGGGGCT............................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................GTATCCTTGGGGCTGGACCTCT.................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
.....................TACCTTCTGTATCCTTGGGGCT............................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0
..................AACTACCTTCTGTATCCTTGGGGCTG........................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................CCTTGGGGCTGGACCTCT.................................................................................................................... 18 1 1 1.00 1 0 0 0 1 0 0 0 0
.................CAACTACCTTCTGTATCCTT.................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................ATCCTTGGGGCTGGACCTCT.................................................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0 0
.....................................................................................................................................TGGCGCGACAACGATGAGGT.............. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................GCCCAGCAGCTGGCGCGACAACGATGA................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................ACGATGAGGTGGCTCAAGCTGGA. 23 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................ATCCTTGGGGCTGGACCTCTG................................................................................................................... 21 2 2 0.50 1 0 1 0 0 0 0 0 0
.....................................................................................................................TGCTCTGCCGAGCAGCCGG............................... 19 2 2 0.50 1 0 0 0 0 0 0 1 0
...................................................................ATATCCGGATATAGTTCCTC................................................................................ 20 3 7 0.29 2 0 0 0 0 0 0 0 2
....................................................AAGTGTCATTGTTGTA................................................................................................... 16 1 4 0.25 1 0 0 1 0 0 0 0 0
.........................................................................................................................CTTCCAAGCAGCTGGCGTGA.......................... 20 3 6 0.17 1 0 0 1 0 0 0 0 0
..............................................................GTTGAGTATCCGCATC......................................................................................... 16 1 6 0.17 1 0 0 0 0 0 0 0 1
...........................................................................................................CTTAAGGCAGTGCTCT............................................ 16 2 20 0.10 2 0 0 0 0 0 0 2 0
..................................................................................................................CAGTGCTCTGCGAAGC..................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0

Anti-sense strand reads

TGGGAGGTGAGGATACCGTTGATGGAAGACATAGGAACCCCGACCTGGAGCATTCACAGTAACAACTTATAGGCGTAGATCAGGGAGTAACGATTGGGTAGGGGTTAGAATAACGTCACGAGACGGGTCGTCGACCGCGCTGTTGCTACTCCACCGAGTTCGACCTC
**************************************************((((.....((((..((......(((.............))).......))..))))....))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body
.........................................GACCTGGACCATTCA............................................................................................................... 15 1 4 0.50 2 1 0 0 0 1 0
.......................................CAGACCTGGACCATTCAAAG............................................................................................................ 20 3 19 0.37 7 0 0 0 6 0 1
.........................................GACCTGGACCATTCAAAG............................................................................................................ 18 2 6 0.33 2 1 0 1 0 0 0
.......................................CAGACCTGGACCATTCA............................................................................................................... 17 2 20 0.25 5 2 3 0 0 0 0
...................................................................................................................................CGACCGCGCTGTTGT..................... 15 1 14 0.21 3 0 2 1 0 0 0
...................................................................................................................TCACGAGATGGGGCGT.................................... 16 2 20 0.10 2 0 0 2 0 0 0
.........................................GACCTGGACCATTCAAA............................................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0

Generated: 04/24/2015 at 02:51 AM