ID:

dsi_27788

 Coordinate:

3l:8105543-8105692 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-4.6 -4.3

Flybase annnotation

CDS [3l_8105693_8105863_-]; exon [3l_8105693_8105863_-]; intron [3l_8105281_8105692_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCGATGTACTCAGCATGTTCCGCCGTTTGCTGATTATACTGACGCAAAAGGTATGTTCCCGCGACATGGGTTTTGCCCAACGATCAGTTGTTATATAGCCCCCTTACCCAGCTCAAGACCTTCATGGTTTAAGGCAGCTCAAGCCGGAGCCAGTCACCCGAAATAGCTCAATCAGATTATCCTCGAAAACATGCTGATCACTTTGCAAAAGCTTCCAGTATAAAATTCGCTGTGAAAAACCATTTTAGAC
*****************************************************************************************************************************************.........((((...((....))....))))..........................******************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR618934
dsim w501 ovaries
 M023
head
 M053
female body
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
.................................................................................................................................................................................TATCCTCGAAAACATGCT....................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................................................................................CAGATTATCCTCGAAAACATGC........................................................ 22 0 1 1.00 1 0 0 0 0 0 1 0
....................CGCCGTTTGCTGATTATACTGACG.............................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0
.CTATGTATTCAGCATGTTCCGCCGT................................................................................................................................................................................................................................ 25 2 1 1.00 1 0 0 1 0 0 0 0
..............ATGTTCCGCCGTTTGCTG.......................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
...............TGTTCCGCCGTTTGCTGA......................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0
........................................................................................................................TTCATGGTTTGAGGCAGCTCA............................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0
..........................TTGCTGATTATACTGACGC............................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................................CTCAAGCCGGAGCCAGTCACCCGAA........................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0
.............CATGTTCCGCCGTTTGCTGATTATACT.................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0
.........................................................................................................................................CGCAAGCCTGATCCAGTC............................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

AGCTACATGAGTCGTACAAGGCGGCAAACGACTAATATGACTGCGTTTTCCATACAAGGGCGCTGTACCCAAAACGGGTTGCTAGTCAACAATATATCGGGGGAATGGGTCGAGTTCTGGAAGTACCAAATTCCGTCGAGTTCGGCCTCGGTCAGTGGGCTTTATCGAGTTAGTCTAATAGGAGCTTTTGTACGACTAGTGAAACGTTTTCGAAGGTCATATTTTAAGCGACACTTTTTGGTAAAATCTG
*******************************************************.........((((...((....))....))))..........................***************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR902009
testis
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 GSM343915
embryo
................CAAGGCGGCAAACGACTAATA..................................................................................................................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................GAGTTCGGCCTCGGTCAGTGG............................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................TGACTGCGTTTTCCATACAAG................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................TCGAGTTAGTCTAATAGGAGC................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................CGCTAGTCAACAATATATCGG...................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................AGCGGGGATATGGGTCGAG........................................................................................................................................ 19 3 11 0.82 9 0 0 8 0 0 0 0 0 1 0
.ACTACATCAGTCGTACAGGGC.................................................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................AAGTAGCAAATTCCG................................................................................................................... 15 1 6 0.17 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................ATGGGTCGAGTTCTT................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................TCGAATTCTTGAAGTAACAAA........................................................................................................................ 21 3 8 0.13 1 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................CGAAGGTCTGATGTTAAGC..................... 19 3 9 0.11 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................CGAAGGTATGATTTTAAGC..................... 19 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0
.GCTACATAAGTCGTA.......................................................................................................................................................................................................................................... 15 1 18 0.06 1 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................GCTATAGAGAGTTAGTCTA......................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................TGGGTCGAGTTATGAA................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0
...............................................TTCCATGCAAGGGCCCG.......................................................................................................................................................................................... 17 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................CGAGTTAGTCTGAAAGCA................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TTGGACATTATCGAGTTAG............................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
...............................................................................................ATCGGGGATATGGGTCCA......................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
...........................................GGTTTTCCATGCAAGG............................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................AGCGGGGAAATGGGTC........................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0

Generated: 04/24/2015 at 10:40 AM