ID:

dsi_27776

 Coordinate:

3r:1472612-1472883 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-48.3 -47.9 -47.9

Flybase annnotation

exon [3r_1472884_1473089_-]; CDS [3r_1472884_1472940_-]; exon [3r_1472271_1472611_-]; CDS [3r_1472271_1472611_-]; intron [3r_1472612_1472883_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCCCACCGCCCACGAAGCCCCCGAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCCTCGCTGAAAATGGTGTTCATCTCGCGTCACAGTTTGTTGAAGCAATAAACACATCTGGAACCGCGCCTGCCTGTGTTTTCCTTCGTAGATAGTGGTTTCTTTGGGGCCATTTGCCTGTCCCAAAGCTGCGGGCCCAAAGTTGATGACGACACCATCTGGTTGTTGTTGCTGCCGCACGCCCTCTTTTCGCTTCGCGATATTGCTTTTCATAGATTAATCATGAGTAATTCCCGGTGGCCGGCTTACTTTTGCAGTCCGCAGGATGTGGCTTCCTGGTCAACGTCATCAAGTCCCTGGGATTCAG
**************************************************.........((((.((....)))))).((((((((((((..((......((((((((...)))))))).....(((..(((((...(((..(((((........)))))..)))..(((((((((.........))))))))).)))))..)))..)).)))))..)))))))...............************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR1275483
Male prepupae		 SRR902008
ovaries
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
..........................................................................................................................................................................................................................ACCATCTGGTTGTTGTTGCT...................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.............GAACCCCGGGAGGGGAGTGA................................................................................................................................................................................................................................................................................................................................................... 20 3 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
..................................................GTAAATTTCTTCAAGCCCT............................................................................................................................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GGTGTTCGTCTCGCGT..................................................................................................................................................................................................................................................................................... 16 1 4 1.25 5 0 0 0 0 0 0 5 0 0 0 0 0
..............................................................................................................................................................................................................GTTGATGACGACACCTTC.................................................................................................................................................... 18 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................GTACGGCAAGGATGAGGTAAATTTC......................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TGTGTTTTCCTTCGTAGATAGTGG................................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................AAGTACGGCAAGGATGAGTTT............................................................................................................................................................................................................................................................................................................................... 21 2 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................GTAATTCCCGGTGGCCGGCT............................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TGTGTTTTCCTTCGTAGATAGTGGT................................................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................CCGGTGGCCGGCTTACTTTTGCAG.................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................CTGTGTTTTCCTTCGTAGATAGTG.................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
....................................ACGGCAAGGATGAGGTAAATTT.......................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...............AGCCCCCAAGGGGAGTGAAGTACGGC........................................................................................................................................................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................TCCCGGTGGCCGGCTTACTTTTG..................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................AGGATGTGGCTTCCTGGTC.......................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..............AACCCCGGGAGGGGAGTGA................................................................................................................................................................................................................................................................................................................................................... 19 3 10 0.60 6 0 1 3 0 2 0 0 0 0 0 0 0
................ACCCCGGAGGGGAGTGA................................................................................................................................................................................................................................................................................................................................................... 17 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................GACGTACGTCAAGGATGATG................................................................................................................................................................................................................................................................................................................................. 20 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
................CCCCCCGAGGGGAGTGAAACA............................................................................................................................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................GTTCGTCTCGCGTCA................................................................................................................................................................................................................................................................................... 15 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.................CCCGGGAGGGGAGTGAA.................................................................................................................................................................................................................................................................................................................................................. 17 2 7 0.43 3 0 1 1 0 1 0 0 0 0 0 0 0
.................CCCGGGAGGGGAGTGA................................................................................................................................................................................................................................................................................................................................................... 16 2 20 0.35 7 0 0 6 0 0 0 0 0 0 0 0 1
................................................AGGTAAATTTCTTCTA.................................................................................................................................................................................................................................................................................................................... 16 1 7 0.29 2 0 2 0 0 0 0 0 0 0 0 0 0
...............AACCCCTGAGGGGAGTGA................................................................................................................................................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................GGTAAATTTCTTCTA.................................................................................................................................................................................................................................................................................................................... 15 1 17 0.24 4 0 1 3 0 0 0 0 0 0 0 0 0
...............ACCCCGGGAGGGGAGTGAA.................................................................................................................................................................................................................................................................................................................................................. 19 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
................................AAGTACGGCAAGGATGAATTT............................................................................................................................................................................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................GGGTTCCTGATCAACGTT.................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................TATGTTGGAGCAATAGACA............................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GTGCCAAAGCTGCGGA............................................................................................................................................................................ 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
...............ACCCCGTGAGGGGAGTGA................................................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GGGGTGGCGGGTGCTTCGGGGGCTCCCCTCACTTCATGCCGTTCCTACTCCATTTAAAGAAGTTCGGGAGCGACTTTTACCACAAGTAGAGCGCAGTGTCAAACAACTTCGTTATTTGTGTAGACCTTGGCGCGGACGGACACAAAAGGAAGCATCTATCACCAAAGAAACCCCGGTAAACGGACAGGGTTTCGACGCCCGGGTTTCAACTACTGCTGTGGTAGACCAACAACAACGACGGCGTGCGGGAGAAAAGCGAAGCGCTATAACGAAAAGTATCTAATTAGTACTCATTAAGGGCCACCGGCCGAATGAAAACGTCAGGCGTCCTACACCGAAGGACCAGTTGCAGTAGTTCAGGGACCCTAAGTC
**************************************************************************************************************************************.........((((.((....)))))).((((((((((((..((......((((((((...)))))))).....(((..(((((...(((..(((((........)))))..)))..(((((((((.........))))))))).)))))..)))..)).)))))..)))))))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 O001
Testis
 SRR902009
testis
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
....................................................................................................................................................................................................GCCCGGGTTTCAAGTGATGC............................................................................................................................................................ 20 3 5 1.60 8 6 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GCCCGGGTTTCAATTGATGC............................................................................................................................................................ 20 3 6 1.50 9 5 4 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................AAAAAGTCAGGGGTCCTTCA...................................... 20 3 6 1.17 7 0 0 0 7 0 0 0 0 0 0 0
.........................................................................................AGCGCAGTGTCAAACAACT........................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................TATGACGAAAAGTATCTA.......................................................................................... 18 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................GCCCGGGTTTCAAGTGATGCT........................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................AAAAGCGAAGCGCTATAACGA.................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CCCGGGTTTCAAGTGATGC............................................................................................................................................................ 19 3 16 0.81 13 7 6 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CCCGGGTTTCAACTGATGC............................................................................................................................................................ 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................TCAGGAGTCCTAGAACGAAG................................ 20 3 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GCCCGGGTTTCAATTGATGCT........................................................................................................................................................... 21 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................AGCTAATCGATATAACGAAAA................................................................................................. 21 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................TAGTTCATGGACCCTAA... 17 1 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................CCGGGTTTCAACTGATGC............................................................................................................................................................ 18 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................CTAGTTCAGGGGCCCTA.... 17 2 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0
........................................................................................GAGCCCAGTGTCCAACA........................................................................................................................................................................................................................................................................... 17 2 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................TTCCTCGCCGGGGTTTCAAC.................................................................................................................................................................. 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 1
....................................................................................AGTAGAGCGCGTTGTCACA............................................................................................................................................................................................................................................................................. 19 3 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................AGTTCAGGGGCCCTATG.. 17 2 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................TTAGACGCCCGGTTTCCAAC.................................................................................................................................................................. 20 3 17 0.06 1 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................GGTGCAGTATTCCAGGGA......... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
............GGGTCGGGGGCTCCCC........................................................................................................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................................................................................................................................................CTAGTTCAGGGGCCC...... 15 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................................TGCGTGCGGGATAAAA..................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:1472562-1472933 - dsi_27776 CCCCACCGCCCACGAAGCCCCCGAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCCTCGCTGAAAATGG-TGTTCATCTCG-CGTCA----------------------CAGTTTGTTGAAGCAATAAAC------ACATCTGGA-ACCGCGC------------------------CTGCCTGTGTTTTC-------------CTT--------------CGTAGATAGT--------------------GGTTTCTT--T---G-GGGCCATT---TGCCTGTCCCAAAGCTGCGG-G-----------------CCCAAAGTTGATGACGACACCAT--------------------CTGG----------------------------------TTGTTGTTGCTGCCG-CACGCCCTCTTTTC--GCTTCGCGAT-----------A--T---TGCTTTTCATAGATTAATCATGAGTAATT-----------------------------------------------------------------CCC---GGTGGCCGGCTT--ACTTTTGCAGTCCGCAGGATGTGGCTTCCTGGTCAACGTCATCAAGTCCCTGGGATTCAG
droSec2 scaffold_6:1693054-1693425 - CCCCACCGCCCACGAAGCCCCCGAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCCTCGCTGAAAATGG-TGTTCATCTCG-CGTCA----------------------CAGTTTGTTGAAGCAATAAAC------ACATCTGGA-ACCGCGC------------------------CTGCCTGTGTTTTC-------------CTT--------------CGTAGATAGT--------------------GGTTTCTT--T---G-GGCCCATT---TGCCTGTCCCAAAGCTGCGG-G-----------------CCCAAAGTTGATGACGACACCAT--------------------CTGG----------------------------------TTGTTGTTGCTGCCG-CACGCCCTCTTTTC--GCTTCGCGAT-----------A--T---TGCTTTTCATAGATTAATCATGAGTAATT-----------------------------------------------------------------CCC---GGTGGCCGGCTT--ACTTTTGCAGTCCGCAGGATGTGGCTTCCTGGTCAACGTCATCAAGTCCCTGGGATTCAG
dm3 chr3R:1584162-1584533 - CCCCACCGCCCACGAAGCCCCCTAGGGGTGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCCTCGCTGAAAATGG-TGTTCATCTCG-CGTCA----------------------CAGTTTTTCCAAGCAATAAAC------CCATCTGGA-ACCGCGC------------------------CTGCTTGTGTTTTC-------------CTT--------------CGTAGATAAT--------------------AGTTTTTT--A---G-GGGCCGTT---TGCCTGTCCCAAAGTTGCGG-G-----------------TCCAAAGTTGATGACGACACCAT--------------------CTGG----------------------------------TTGTTGTTGCTGCCG-CACGCCCTCTTTTC--GCTTAGCGAT-----------A--T---TGCTTTTCTTAGATAAACCATGAGTAATT-----------------------------------------------------------------CCC---GGTGGCCGGCTT--ACTTTTGCAGTCCGCAGGATGTGGCTTCCTGGTCAACGTCATCAAGTCCCTGGGATTCAG
droEre2 scaffold_4770:1851370-1851735 - CCCCACCGCCCACGAAACCTCCTAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCCTCGCTGAAAATGG-TGTTCCACTTG-CATCA----------------------CAGTTTCTCCAAGCAATAAAC------ACATTTGGA-ACCGCGC------------------------CTGCATGTGTTTTC-------------CTT--------------CGTAGATAAT--------------------GGTTTTTT--TTTTT-T-GC----CGTTGCCTG------TG-TGCGG-G-----------------TCCAAAGTTGATGACGACACCAT--------------------GTGG----------------------------------TTGTTGTTGCTGCAG-CACGCCCTCTTTTC--ACTTAGCGAT-----------A--T---TGCCTTTCATAGATTAACCATGAGTAATT-----------------------------------------------------------------CCC---TGTGGCCGGCTT--ACTTTTGCAGTCCGCAGGATGTGGCTTCCTGGTTAACGTCATCAAGTCACTGGGATTCAG
droYak3 3R:17539677-17540033 - CCCCACCGCCCACGAAACCTCCAAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAACCCTCGCTGAAAATGG-TGTTCGACTCG-CGTCA----------------------CAGTTTCTCCAAGCAATAAAG------CCATCTGGA-ACTGCGC------------------------CTGCTTGTGTTTTTTTTT---------TTT--------------CGTAGATAAT--------------------GGTTTTTTTTT---G-G-GC----C---------------GTTGCGG-G-----------------CCCAGAGTTGATGACGACACCAT--------------------CAGG----------------------------------TTGTTGTTCCTGTAG-CACGCCCTCTTTTA--GCATAGCGAT-----------A--T---TG----TCTTAGATTTACCATGAGTAATT-----------------------------------------------------------------CCC---CGTGGCCGGCTT--ACTTTTGCAGTCCGCAGGATGTGGCTTTCTGGTTAACGTTATCAAGTCCCTGGGATTCAG
droEug1 scf7180000409766:549770-550131 - CCCCCCCGCCTACGAAGCCTCCAAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCATCTCTGAAAATGG-TATTTCCCTCG-CAGCT----------------------TAGTCTTCTCAACCAATAAAC------CCACCTGGAAACCTCGC------------------------CTTATTGTGTTTTG-------------TTC--------------GCTAAAAAAT--------------------AGGTTCTT--A---G-G-------TGCAGCTTG------CGCTGCGG-G-----------------TCCAAAGTTGATGACGACACCAT--------------------CTGGATG-------------------------------TTGTTGTTGGTGCCA-TACGCCCTCTTTTT--GTGAGGCGAT-----------A--T---TGTTTTTCTTAGATTAAAAGTGAGTAATG------------------------------------------------------------------------GTTGTTGGACA--TTTTTTGTAGTCCGCAGGATGTGGCTTTCTGGTCAACGTCATCAAGTCTCTGGGATTCAG
droBia1 scf7180000302155:3174193-3174567 + CCCCCCCGCCCACGAAGCCTCCACGGGGAGTCAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCGTCGCTGAAAATTG-TGTTCCAGTCG-CAGCA----------------------TAGTCTCCTTAATCAATAAAC------CCACCTGGAAACCCCAC------------------------CTGGCTGTGTTTTT-------------TTTCTTATTTGTTGATTGCCTACAAAA---------------------GGTTCTT------G-G-GG----CGCCGCCTG------CG-AGCGG-G-----------------TCCAAAG-TGATGACGACACCAT--------------------CTGG----------------------------------TTGTTTTTGTTGCCG-CACGCCCTCTTTTT--GTTTAGCGAT-----------A--T---TACTTTTCTTAGATTACAAATGAGTAATG-----------------------------------------------------------------CCT---GGTGGATGGCTT--CCCATTGCAGTCTGCAGGGTGTGGCTTCCTGGTCAACGTCATCAAGTCGCTGGGGTTCAG
droTak1 scf7180000415754:179542-179918 + CCCCCCCGCCCACGAAGCCTCCGAGGGGAGTGAAGTACGGAAAGGATGAGGTAAATTACTTCAAGCCATCGCTGAAAATGT-TGTTCCACTCG-CAGCA----------------------CAGTCTCTCCAATCAATAAAC------CCACCTGGAAACCCCGC------------------------CTGGTTGTGTTGCG-------------TTT--TGATTGTTGTTGGCTAAGCTTT--------------------AGGTT---TTA---G-G-GC----CGCCGCCTG------CG-AGCGG-G-----------------TCCAAAGTTGATGACGACACCAT--------------------CTGG----------------------------------TTGTTGTTGCTGCCG-CACGCCCTCTTTTT--GC-TGGCGAT-----------A--TATGTGCTTTTTCTAGATTACAAATGAGTAATG-----------------------------------------------------------------CCC---GGTGGTCGGCTT--CCCTTTGCAGTCCGCAGGATGTGGCTTCCTGGTCAACGTCATCAAGTCGCTGGGCTTCAA
droEle1 scf7180000491278:244129-244486 - CCCCCCCGCCTACGAAGCCTCCGAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCTTCGCTGAAAATGG-TGTTCGACTCG-CACTT----------------------CAATCTTTTTACACAATAAAC------TCACCTGGAACATCCGC------------------------CTGGTCGTGTTTTG-------------TTT--------------GCTAACTAAT--------------------TGGTT---TT---CG-G-GC----CGCCGCCTG------AGCTGCGG-G-----------------TCCAAAGTTGATGACGACACC-----------------------TGG----------------------------------TTGTTGTTGTTGCCG-CACGCCCTCTTTTT---TTTAGCGAT-----------G--T---T-TTTTTCTTAGATTAAAAATGAGTAATG-----------------------------------------------------------------GC----TGCGGCCGGCTT--GCTTTTGCAGTCCGCAGGATGTGGCTTTCTGGTCAACGTCATCAAGTCCCTGGGATTCAG
droRho1 scf7180000780033:32077-32431 + CCCCCCCGCCAACAAAGCCTCCGAGGGGAGTGAAATACGGCAAGGATGAGGTAAATTTCTTCAAGCCGTCGCTGAAAATGC-TGTTCCACTCG-CATTT----------------------TAGTCTCTCTACACAATAAAC------GCACCTGGAAACCCCGC------------------------CTTGTCGTGTTTTG-------------TTT--------------GCTAACTAAA--------------------GGTTT---TT---CG-G-GC----CGCCGCCTG------AGCTGCGG-G-----------------TCCAAAGTTGATGACGACACC-----------------------TAG----------------------------------TTGTTGTTGTTGCCG-CACGCCCTCTTTT------TAGCGAT-----------G--T---T-TTTTTCTTAGATTAAAAATGAGTAATG-----------------------------------------------------------------GC----TATGGCCGGCTT--GCCTTTGCAGTCCGCAGGATGTGGTTTTCTGGTCAACGTCATCAAGTCTCTGGGATTCAG
droFic1 scf7180000453850:990712-991075 - CCCCCCCGCCTACAAAGCCTCCGAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAACCTTCGCTCAAAATGG-TGTTCCAATCG-CACTG----------------------TAGCCTCTTTACGCAATAAAA------CCTCTTGGAAAA-CCTC------------------------CTGGCTCTGTTTTC-------------CTT--------------GCGAACTAAT--------------------TGGTC---GA---GGGT--G----CTCCGCCTC------AGTTGCGG-A-----------------TCCAAAGTTGATGACGACACCAC--------------------CCGG----------------------------------TTGTTGTTGTTGCCG-CACGCCCTCTTTTT-TGTTCAGCGAT-----------G--T---TATTTTTCTTAGATATCAAGTGACTAATA-----------------------------------------------------------------TGG---GGTGATTGGCTT--GGTTTTGCAGTCTGCAGGATGTGGCTTTCTGGTCAATGTCATCAAGTCTTTGGGGTTCAG
droKik1 scf7180000302387:510584-510945 - CTCCCCCGCCGACGAAGCCTCCGAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTACTTCAAACCGTCGCTGAAAATGG-TTTTCAATTCG-CGAAC----------------------CAGCCTCCCACTGCAATAAAT------TTAATGGAAATCCCCAT------------------------CTGGTTGTGTTTTG-------------TTT--------------GTTAACTAAT--------------------GGTTT---TT---CA-T-GCC---CGCTGCCCG------AGTTGCGG-C-----------------TCCAAAGATGATGACGACACCAT--------------------CTGG----------------------------------TTGTTGTTGTTGCTG-CACGCCCTCTTTTTGTGTTTTACGAT-----------AAGT---TGTTATTGGTAGATTAATAATGAAAG---------------------------------------------------------------TATGT---GTGTG-------TTT----AATAATAGTCCGCAGGATGTGGCTTTCTGGTCAACGTCATTAAATCTCTGGGATTCAG
droAna3 scaffold_13340:18516088-18516427 + CCCCGCCACCTACAAAGCCTCCGCGGGGAGTGAAATATGGCAAGGATGAGGTAAATTACTTCAAGCCGTCGCTGAAAATGA-TTTTTCAATAT-TCCAA----------------------CAACTACAATATGCAATAAAC------TTTACCGGAAACCACAT-----------------------------------------------------------------------A-AAAGAGGTCTTATTGATGGTCTAATGGTGT---TT-------------------------------TTACGG-G-----------------TCCAAGGCTGATGACGACACCAT--------------------C--------------------------------------TGTTGTTGTTGCTG-CACGCCCTCTTTTT--------TTTTTTTTTGT-----------------TTTGAGATATGTAATGAATAATCTTTTCAC----------------------------------------------------TTATTT---TTGTGTGG-----------CTTTGTAGTCCGCAGGCTGTGGTTTTCTGGTCAATGTCATCAAATCCCTGGGATTCAG
droBip1 scf7180000395971:4450-4781 - CCCCGCCACCAACAAAGCCTCCTCGCGGAGTGAAATATGGCAAGGATGAGGTAAATTACTTCAAGCCGTCGCTGAAAATAA-CTTTTCAATAC-CCTAA----------------------CAACTACCATGTGCAATAAAC------TATACCGGAAAATACAT-----------------------------------------------------------------------A-AAAAAGGTCTTCTTGATGGTCGTATTGTGT---TT-------------------------------TTGCGG-G-----------------TCTAAGGCTGATGACGACACCAT--------------------CT-G----------------------------------TTGTTGTTGTTGCTG-CACGCCCTCTTTTT--GTTTTG--------------------------------AGATAAGTAATGAATAATCTTTTCAC----------------------------------------------------TTTT--TCT---GGTGG-----------CTTTGTAGTCCGCAGGCTGTGGTTTTCTGGTCAATGTCATCAAATCCCTCGGATTCAG
dp5 2:17414815-17415204 - CTCCCCCGCCAACAAAGCCTCCCAGGGGCGTGAAGTATGGCAAGGATGAGGTAAATTTCTTCAAGCCATCGCTGAAAATGA-TCTTCGAAACGATAAATAGATGAAGTTCTCATTAGTA--TAGTACAAGTATTCAATAAAC------AA-----------------------GTACTACGAATCTGGCCT--------CTGGCCC-ATAAAATTGTTT--------------GGTAACTTAT--------------------TATTT---TG---TG-T-GC-----TGTG----TCCCAC---------------------------AACCAAGTTGATGACGACACCACTA---CATTGGAC--------------------------------------TGTGGGTCGGTTTTTGTTGTTG-CACGCCCTCTTTT--------GTGATATTTTGTTATAAT---------------------------------ATGATCACTGCG-----------------GGCCTGACCT--------GTGCG-TGTT------------------------CTT--GCTTGTGTAGTCCGCAGGTTGTGGTTTTCTGGTCAACGTCATCAAATCCCTGGGATTCAG
droPer2 scaffold_0:11262252-11262641 - CTCCCCCGCCAACAAAGCCTCCCAGGGGCGTGAAGTATGGCAAGGATGAGGTAAATTTCTTCAAGCCAACGCTGAAAATGA-TCTTCGAAACGATAAATAGATGAAGTTCTCATTAGTA--TAGTACAAGTATTGAATAAAC------AC-----------------------GTACTACGAATCTGGCCT--------CTGGCCC-ATAAAATTATTT--------------GGTAACTTAT--------------------TATTT---TG---TG-T-GC-----TGTG----TCCCAC---------------------------AACCAAGTTGATGACGACACCACTA---CATTGGAC--------------------------------------TGTGGGTCGGTTTTTGTTGTTG-CACGCCCTCTTTT--------GCGATATTTTGTTATAAT---------------------------------ATGATCACTGCG-----------------GGCCTGACTT--------GTGCG-TGTT------------------------CTT--GCTTGTGTAGTCCGCAGGTTGTGGTTTTCTGGTCAACGTCATCAAATCCCTGGGATTCAG
droWil2 scf2_1100000004943:5216862-5217116 + CACCGCCGCCAACTAAGCCTCCCCGCGGAGTCAAGTATGGCAAGGATGAGGTAAAC-------------------------------------------------------------------------------AATA--------------CGGA-----------------------------------ATTATGATTTCCAT-A--------------CATTCTCGTT---------------------------------------------------------------------------GGCTTTAGCCAAACCTAGGCAAAGCGAAAATGATGACGACACTT-------------------------------------------------------------CTTGTTGTTGTCATCACTCCCACTTTTT--A------------------AAAT---------------------------------ATCATCTAATCT-----------------GGACT------------------TTGTT--------------------TCGAATT--CTGCTTGTAGTCAGCAGGCTGTGGCTTCCTGGTCAACGTTATCAAGTCTCTGGGCTTTAG
droVir3 scaffold_13047:5262299-5262696 + dvi_15622 CGCCGCCGCCAACAAAGCCACCCAGAGGCGTTAAATATGGAAAAGATGAGGTACATTTGTTCAAGACAAAACTAAAAATAC-TTTATAAACCC-TAAAT----------------------TGTTCATATAATGTAATAAAA------AACAATTTACAA-TCACCTAAAGTCGTACAAAATACGCTGTGTAA-----------------------------------------------------------------------CATTCTT--T---G-G----------CGAAAA------AGCCGCTT-A-----------------TAAGAAGCTGATGACGACACCAATGCTGATGCGGTCTCATGTTGTAGTTG-------------------------------TTGTTTTTGTTGTTG-CACGCCCTCTTTG-----------AT-----------A--TTTG---------ATAATAAAAAGTGGCAAATA-----------------TTAATTATACTG----GGCGTGTGCTCCTGTGCTTTGTT--ATT-------GT---------TTTTGTTTTTTTGCAGTCCGCCAGCTGTGGCTTTCTCGTCAACGTCATCAAGTCTCTGGGCTTCAG
droMoj3 scaffold_6540:21164981-21165408 - CGCCGCCGCCAACAAAGCCACCCAGAGGCGTTAAATATGGAAAGGATGAGGTACATTTATTCAAGACATCGCTAAAAAAAAGTATATGGATAT-TAATG--------TGATCAT-----AAAAACT---------GAGCATAATGTGGAGTAAAT--CAG----TCAAGAGCTATACCAAGAACACGGTGCAACCAAGTTTTGCCC-A----------------------------------------------------------------------------------------TAATACCGCTTGGCAT-----------------TACCAAGCCGATGACGACACCTCTG---ATGCGGACTCATAATATGGTTGTTGTTGTGTTTCTGTTCGTGTTGTTGTGTGGCTGCTTTTGTTGTTA-TACGCCCTTTTTCA--T--------------------AT--ATG----------A----------GAATAACGAATTC-----GTGGATTGTAATTTTGCTG----GGCGTGTGCGCTTGT------TTCATTT-------GT---------ATTT--GGCTTTTCAGTCCGCCGGCTGTGGCTTTCTCGTCAACGTCATCAAATCGCTGGGCTTCAG
droGri2 scaffold_14906:10656977-10657045 + GCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------------------------CA---TGTTTTGCAGTCCGCAGGTTGTGGTTTTCTCGTCAACGTCATCAAGTCGCTGGGTTTCAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCCCACCGCCCACGAAGCCCCCGAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCCTCGCTGAAAATGG-TGTTCATCTCG-CGTCA----------------------CAGTTTGTTGAAGCAATAAAC------ACATCTGGA-ACCGCGC------------------------CTGCCTGTGTTTTC-------------CTT--------------CGTAGATAGT--------------------GGTTTCTT--T---G-GGGCCATT---TGCCTGTCCCAAAGCTGCGG-G-----------------CCCAAAGTTGATGACGACACCAT--------------------CTGG----------------------------------TTGTTGTTGCTGCCG-CACGCCCTCTTTTC--GCTTCGCGAT-----------A--T---TGCTTTTCATAGATTAATCATGAGTAATT-----------------------------------------------------------------CCC---GGTGGCCGGCTT--ACTTTTGCAGTCCGCAGGATGTGGCTTCCTGGTCAACGTCATCAAGTCCCTGGGATTCAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................ACCAT--------------------CTGG----------------------------------TTGTTGTTGCT...............................................................................................................................................................................................................................2012.00220000000000000000
..................................................GTAAATTTCTTCAAGCCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000000000
..................................GTACGGCAAGGATGAGGTAAATTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000000000
..................................................................................................................................................................................................TGTGTTTTC-------------CTT--------------CGTAGATAGT--------------------GG...........................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATT-----------------------------------------------------------------CCC---GGTGGCCGGCT...............................................................2011.00110000000000000000
..................................................................................................................................................................................................TGTGTTTTC-------------CTT--------------CGTAGATAGT--------------------GGT..........................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC---GGTGGCCGGCTT--ACTTTTGCAG..................................................2411.00100000000000010000
.................................................................................................................................................................................................CTGTGTTTTC-------------CTT--------------CGTAGATAGT--------------------G............................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000100000
....................................ACGGCAAGGATGAGGTAAATTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------------CCC---GGTGGCCGGCTT--ACTTTTG.....................................................2311.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATGTGGCTTCCTGGTC..........................1911.00100100000000000000
droSec2
CCCCACCGCCCACGAAGCCCCCGAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCCTCGCTGAAAATGG-TGTTCATCTCG-CGTCA----------------------CAGTTTGTTGAAGCAATAAAC------ACATCTGGA-ACCGCGC------------------------CTGCCTGTGTTTTC-------------CTT--------------CGTAGATAGT--------------------GGTTTCTT--T---G-GGCCCATT---TGCCTGTCCCAAAGCTGCGG-G-----------------CCCAAAGTTGATGACGACACCAT--------------------CTGG----------------------------------TTGTTGTTGCTGCCG-CACGCCCTCTTTTC--GCTTCGCGAT-----------A--T---TGCTTTTCATAGATTAATCATGAGTAATT-----------------------------------------------------------------CCC---GGTGGCCGGCTT--ACTTTTGCAGTCCGCAGGATGTGGCTTCCTGGTCAACGTCATCAAGTCCCTGGGATTCAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........ACGAAGCCCCCGAGGGGAGTGAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.............................GTGAAGTACGGCAAGGATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
...................CCCGAGGGGAGTGAAGTACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
...................CCCGAGGGGAGTGAAGTACGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAATT-----------------------------------------------------------------CCC---GGTGGCCGGCT...............................................................2320.5010001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTTCCTGGTCAACGTC....................2020.5010010
.......................................................................................ATCTCG-CGTCA----------------------CAGTTTGTTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTCCGCAGGATGTG.....................................1920.5010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTCCTGGTCAACGTC....................1920.5010010
.................................................................................................CA----------------------CAGTTTGTTGAAGCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010001
dm3
CCCCACCGCCCACGAAGCCCCCTAGGGGTGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCCTCGCTGAAAATGG-TGTTCATCTCG-CGTCA----------------------CAGTTTTTCCAAGCAATAAAC------CCATCTGGA-ACCGCGC------------------------CTGCTTGTGTTTTC-------------CTT--------------CGTAGATAAT--------------------AGTTTTTT--A---G-GGGCCGTT---TGCCTGTCCCAAAGTTGCGG-G-----------------TCCAAAGTTGATGACGACACCAT--------------------CTGG----------------------------------TTGTTGTTGCTGCCG-CACGCCCTCTTTTC--GCTTAGCGAT-----------A--T---TGCTTTTCTTAGATAAACCATGAGTAATT-----------------------------------------------------------------CCC---GGTGGCCGGCTT--ACTTTTGCAGTCCGCAGGATGTGGCTTCCTGGTCAACGTCATCAAGTCCCTGGGATTCAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCC---GGTGGCCGGCTT--ACTTTTG.....................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CTCG-CGTCA----------------------CAGTTTTTCCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC---GGTGGCCGGCTT--ACTTTTG.....................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCAAGTCCCTGGGATT...1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000
......................TAGGGGTGTGAAGTACGGCAAGGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------------CCC---GGTGGCCGGCTT--ACTTTTG.....................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATGTGGCTTCCTGGTCAACGTC....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AGGGGTGTGAAGTACGGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATT-----------------------------------------------------------------CCC---GGTGGCCGGCTT--A...........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................AT--------------------CTGG----------------------------------TTGTTGTTGCTGCCG-..........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
............CGAAGCCCCCTAGGGGTGTGAAGTAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TAGGGGTGTGAAGTACGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TGAAGTACGGCAAGGATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...............................GAAGTACGGCAAGGATGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGGATGTGGCTTCCTGGC...........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CCCCTAGGGGTGTGAAGTACGGCAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................GATAAT--------------------AGTTTTTT--A---G-GGGCC........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----------------------------------------------------------------CCC---GGTGGCCGGCTT--ACTTTTG.....................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ACGAAGCCCCCTAGGGGTGTGAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................GTTTTTT--A---G-GGGCCGTT---TGC...............................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................GAAGTACGGCAAGGATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGTCATCAAGTCCCTGGG......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................AAGTACGGCAAGGATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-----------------------------------------------------------------CCC---GGTGGCCGGCTT--ACTTTTG.....................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC---GGTGGCCGGCTT--ACTTTTGCA...................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TAAATTTCTTCAAGCCCTCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................TAGGGGTGTGAAGTACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............................TGTGAAGTACGGCAAGGATGAGGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
....ACCGCCCACGAAGCCCCCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCC---GGTGGCCGGCTT--ACTTTTGCAG..................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TAGGGGTGTGAAGTACGGCAAGGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTCATCAAGTCCCTGGGA.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
........................................CAAGGATGAGGTAAATTTCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CCCTAGGGGTGTGAAGTACGGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................TCTTCAAGCCCTCGCTGAAAATGG-T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TCTCG-CGTCA----------------------CAGTTTTTCCAAGCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-----------------------------------------------------------------CCC---GGTGGCCGGCTT--ACT.........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
...............................................................................................................................................................................................................................................TAAT--------------------AGTTTTTT--A---G-GGGCCGT......................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC---GGTGGCCGGCTT--ACTTTT......................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................GTTCATCTCG-CGTCA----------------------CAGTTTTTCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCAGTCCGCAGGATGTG.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
droEre2
CCCCACCGCCCACGAAACCTCCTAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCCTCGCTGAAAATGG-TGTTCCACTTG-CATCA----------------------CAGTTTCTCCAAGCAATAAAC------ACATTTGGA-ACCGCGC------------------------CTGCATGTGTTTTC-------------CTT--------------CGTAGATAAT--------------------GGTTTTTT--TTTTT-T-GC----CGTTGCCTG------TG-TGCGG-G-----------------TCCAAAGTTGATGACGACACCAT--------------------GTGG----------------------------------TTGTTGTTGCTGCAG-CACGCCCTCTTTTC--ACTTAGCGAT-----------A--T---TGCCTTTCATAGATTAACCATGAGTAATT-----------------------------------------------------------------CCC---TGTGGCCGGCTT--ACTTTTGCAGTCCGCAGGATGTGGCTTCCTGGTTAACGTCATCAAGTCACTGGGATTCAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................GTGAAGTACGGCAAGGATGAGTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.....................CTAGGGGAGTGAAGTACGGCAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
...............................GAAGTACGGCAAGGATGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCGGCTT--ACTTTTG.....................................................1811.0010000010
droYak3
CCCCACCGCCCACGAAACCTCCAAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAACCCTCGCTGAAAATGG-TGTTCGACTCG-CGTCA----------------------CAGTTTCTCCAAGCAATAAAG------CCATCTGGA-ACTGCGC------------------------CTGCTTGTGTTTTTTTTT---------TTT--------------CGTAGATAAT--------------------GGTTTTTTTTT---G-G-GC----C---------------GTTGCGG-G-----------------CCCAGAGTTGATGACGACACCAT--------------------CAGG----------------------------------TTGTTGTTCCTGTAG-CACGCCCTCTTTTA--GCATAGCGAT-----------A--T---TG----TCTTAGATTTACCATGAGTAATT-----------------------------------------------------------------CCC---CGTGGCCGGCTT--ACTTTTGCAGTCCGCAGGATGTGGCTTTCTGGTTAACGTTATCAAGTCCCTGGGATTCAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................AAAG------CCATCTGGA-ACTGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...CACCGCCCACGAAACCTCCAAGGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
droEug1
CCCCCCCGCCTACGAAGCCTCCAAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCATCTCTGAAAATGG-TATTTCCCTCG-CAGCT----------------------TAGTCTTCTCAACCAATAAAC------CCACCTGGAAACCTCGC------------------------CTTATTGTGTTTTG-------------TTC--------------GCTAAAAAAT--------------------AGGTTCTT--A---G-G-------TGCAGCTTG------CGCTGCGG-G-----------------TCCAAAGTTGATGACGACACCAT--------------------CTGGATG-------------------------------TTGTTGTTGGTGCCA-TACGCCCTCTTTTT--GTGAGGCGAT-----------A--T---TGTTTTTCTTAGATTAAAAGTGAGTAATG------------------------------------------------------------------------GTTGTTGGACA--TTTTTTGTAGTCCGCAGGATGTGGCTTTCTGGTCAACGTCATCAAGTCTCTGGGATTCAGSizeHit CountTotal NormTotal
No Reads
droBia1
CCCCCCCGCCCACGAAGCCTCCACGGGGAGTCAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCGTCGCTGAAAATTG-TGTTCCAGTCG-CAGCA----------------------TAGTCTCCTTAATCAATAAAC------CCACCTGGAAACCCCAC------------------------CTGGCTGTGTTTTT-------------TTTCTTATTTGTTGATTGCCTACAAAA---------------------GGTTCTT------G-G-GG----CGCCGCCTG------CG-AGCGG-G-----------------TCCAAAG-TGATGACGACACCAT--------------------CTGG----------------------------------TTGTTTTTGTTGCCG-CACGCCCTCTTTTT--GTTTAGCGAT-----------A--T---TACTTTTCTTAGATTACAAATGAGTAATG-----------------------------------------------------------------CCT---GGTGGATGGCTT--CCCATTGCAGTCTGCAGGGTGTGGCTTCCTGGTCAACGTCATCAAGTCGCTGGGGTTCAGSizeHit CountTotal NormTotal
No Reads
droTak1
CCCCCCCGCCCACGAAGCCTCCGAGGGGAGTGAAGTACGGAAAGGATGAGGTAAATTACTTCAAGCCATCGCTGAAAATGT-TGTTCCACTCG-CAGCA----------------------CAGTCTCTCCAATCAATAAAC------CCACCTGGAAACCCCGC------------------------CTGGTTGTGTTGCG-------------TTT--TGATTGTTGTTGGCTAAGCTTT--------------------AGGTT---TTA---G-G-GC----CGCCGCCTG------CG-AGCGG-G-----------------TCCAAAGTTGATGACGACACCAT--------------------CTGG----------------------------------TTGTTGTTGCTGCCG-CACGCCCTCTTTTT--GC-TGGCGAT-----------A--TATGTGCTTTTTCTAGATTACAAATGAGTAATG-----------------------------------------------------------------CCC---GGTGGTCGGCTT--CCCTTTGCAGTCCGCAGGATGTGGCTTCCTGGTCAACGTCATCAAGTCGCTGGGCTTCAASizeHit CountTotal NormTotal
No Reads
droEle1
CCCCCCCGCCTACGAAGCCTCCGAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCTTCGCTGAAAATGG-TGTTCGACTCG-CACTT----------------------CAATCTTTTTACACAATAAAC------TCACCTGGAACATCCGC------------------------CTGGTCGTGTTTTG-------------TTT--------------GCTAACTAAT--------------------TGGTT---TT---CG-G-GC----CGCCGCCTG------AGCTGCGG-G-----------------TCCAAAGTTGATGACGACACC-----------------------TGG----------------------------------TTGTTGTTGTTGCCG-CACGCCCTCTTTTT---TTTAGCGAT-----------G--T---T-TTTTTCTTAGATTAAAAATGAGTAATG-----------------------------------------------------------------GC----TGCGGCCGGCTT--GCTTTTGCAGTCCGCAGGATGTGGCTTTCTGGTCAACGTCATCAAGTCCCTGGGATTCAGSizeHit CountTotal NormTotal
No Reads
droRho1
CCCCCCCGCCAACAAAGCCTCCGAGGGGAGTGAAATACGGCAAGGATGAGGTAAATTTCTTCAAGCCGTCGCTGAAAATGC-TGTTCCACTCG-CATTT----------------------TAGTCTCTCTACACAATAAAC------GCACCTGGAAACCCCGC------------------------CTTGTCGTGTTTTG-------------TTT--------------GCTAACTAAA--------------------GGTTT---TT---CG-G-GC----CGCCGCCTG------AGCTGCGG-G-----------------TCCAAAGTTGATGACGACACC-----------------------TAG----------------------------------TTGTTGTTGTTGCCG-CACGCCCTCTTTT------TAGCGAT-----------G--T---T-TTTTTCTTAGATTAAAAATGAGTAATG-----------------------------------------------------------------GC----TATGGCCGGCTT--GCCTTTGCAGTCCGCAGGATGTGGTTTTCTGGTCAACGTCATCAAGTCTCTGGGATTCAGSizeHit CountTotal NormTotal
No Reads
droFic1
CCCCCCCGCCTACAAAGCCTCCGAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAACCTTCGCTCAAAATGG-TGTTCCAATCG-CACTG----------------------TAGCCTCTTTACGCAATAAAA------CCTCTTGGAAAA-CCTC------------------------CTGGCTCTGTTTTC-------------CTT--------------GCGAACTAAT--------------------TGGTC---GA---GGGT--G----CTCCGCCTC------AGTTGCGG-A-----------------TCCAAAGTTGATGACGACACCAC--------------------CCGG----------------------------------TTGTTGTTGTTGCCG-CACGCCCTCTTTTT-TGTTCAGCGAT-----------G--T---TATTTTTCTTAGATATCAAGTGACTAATA-----------------------------------------------------------------TGG---GGTGATTGGCTT--GGTTTTGCAGTCTGCAGGATGTGGCTTTCTGGTCAATGTCATCAAGTCTTTGGGGTTCAGSizeHit CountTotal NormTotal
No Reads
droKik1
CTCCCCCGCCGACGAAGCCTCCGAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTACTTCAAACCGTCGCTGAAAATGG-TTTTCAATTCG-CGAAC----------------------CAGCCTCCCACTGCAATAAAT------TTAATGGAAATCCCCAT------------------------CTGGTTGTGTTTTG-------------TTT--------------GTTAACTAAT--------------------GGTTT---TT---CA-T-GCC---CGCTGCCCG------AGTTGCGG-C-----------------TCCAAAGATGATGACGACACCAT--------------------CTGG----------------------------------TTGTTGTTGTTGCTG-CACGCCCTCTTTTTGTGTTTTACGAT-----------AAGT---TGTTATTGGTAGATTAATAATGAAAG---------------------------------------------------------------TATGT---GTGTG-------TTT----AATAATAGTCCGCAGGATGTGGCTTTCTGGTCAACGTCATTAAATCTCTGGGATTCAGSizeHit CountTotal NormTotal
No Reads
droAna3
CCCCGCCACCTACAAAGCCTCCGCGGGGAGTGAAATATGGCAAGGATGAGGTAAATTACTTCAAGCCGTCGCTGAAAATGA-TTTTTCAATAT-TCCAA----------------------CAACTACAATATGCAATAAAC------TTTACCGGAAACCACAT-----------------------------------------------------------------------A-AAAGAGGTCTTATTGATGGTCTAATGGTGT---TT-------------------------------TTACGG-G-----------------TCCAAGGCTGATGACGACACCAT--------------------C--------------------------------------TGTTGTTGTTGCTG-CACGCCCTCTTTTT--------TTTTTTTTTGT-----------------TTTGAGATATGTAATGAATAATCTTTTCAC----------------------------------------------------TTATTT---TTGTGTGG-----------CTTTGTAGTCCGCAGGCTGTGGTTTTCTGGTCAATGTCATCAAATCCCTGGGATTCAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..CCGCCACCTACAAAGCCTCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGATATGTAATGAAT.....................................................................................................................................................1911.001000010
....................................................AAATTACTTCAAGCCGTCGCTGAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
................................AAATATGGCAAGGATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGTCAATGTCATCAAATCCCT.........2511.001010000
....................................................AAATTACTTCAAGCCGTCGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
droBip1
CCCCGCCACCAACAAAGCCTCCTCGCGGAGTGAAATATGGCAAGGATGAGGTAAATTACTTCAAGCCGTCGCTGAAAATAA-CTTTTCAATAC-CCTAA----------------------CAACTACCATGTGCAATAAAC------TATACCGGAAAATACAT-----------------------------------------------------------------------A-AAAAAGGTCTTCTTGATGGTCGTATTGTGT---TT-------------------------------TTGCGG-G-----------------TCTAAGGCTGATGACGACACCAT--------------------CT-G----------------------------------TTGTTGTTGTTGCTG-CACGCCCTCTTTTT--GTTTTG--------------------------------AGATAAGTAATGAATAATCTTTTCAC----------------------------------------------------TTTT--TCT---GGTGG-----------CTTTGTAGTCCGCAGGCTGTGGTTTTCTGGTCAATGTCATCAAATCCCTCGGATTCAGSizeHit CountTotal NormTotal
No Reads
dp5
CTCCCCCGCCAACAAAGCCTCCCAGGGGCGTGAAGTATGGCAAGGATGAGGTAAATTTCTTCAAGCCATCGCTGAAAATGA-TCTTCGAAACGATAAATAGATGAAGTTCTCATTAGTA--TAGTACAAGTATTCAATAAAC------AA-----------------------GTACTACGAATCTGGCCT--------CTGGCCC-ATAAAATTGTTT--------------GGTAACTTAT--------------------TATTT---TG---TG-T-GC-----TGTG----TCCCAC---------------------------AACCAAGTTGATGACGACACCACTA---CATTGGAC--------------------------------------TGTGGGTCGGTTTTTGTTGTTG-CACGCCCTCTTTT--------GTGATATTTTGTTATAAT---------------------------------ATGATCACTGCG-----------------GGCCTGACCT--------GTGCG-TGTT------------------------CTT--GCTTGTGTAGTCCGCAGGTTGTGGTTTTCTGGTCAACGTCATCAAATCCCTGGGATTCAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGGTTGTGGTTTTCTG.............................2012.0020100100000
.............................GTGAAGTATGGCAAGGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020100100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGTCATCAAATCCCTGG.......2011.0010000001000
..........AACAAAGCCTCCCAGGGGCGTGAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCAGGTTGTGGTTTTCTGGT...........................2411.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TGTT------------------------CTT--GCTTGTGTAGAA................................................2011.0010100000000
.............................GTGAAGTATGGCAAGGATGAGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGTCATCAAATCCCTGGG......2211.0010100000000
.............................GTGAAGTATGGCAAGGATGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTTCTGGTCAACGTC....................2011.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGGTTGTGGTTTTCTGGT...........................2211.0010100000000
droPer2
CTCCCCCGCCAACAAAGCCTCCCAGGGGCGTGAAGTATGGCAAGGATGAGGTAAATTTCTTCAAGCCAACGCTGAAAATGA-TCTTCGAAACGATAAATAGATGAAGTTCTCATTAGTA--TAGTACAAGTATTGAATAAAC------AC-----------------------GTACTACGAATCTGGCCT--------CTGGCCC-ATAAAATTATTT--------------GGTAACTTAT--------------------TATTT---TG---TG-T-GC-----TGTG----TCCCAC---------------------------AACCAAGTTGATGACGACACCACTA---CATTGGAC--------------------------------------TGTGGGTCGGTTTTTGTTGTTG-CACGCCCTCTTTT--------GCGATATTTTGTTATAAT---------------------------------ATGATCACTGCG-----------------GGCCTGACTT--------GTGCG-TGTT------------------------CTT--GCTTGTGTAGTCCGCAGGTTGTGGTTTTCTGGTCAACGTCATCAAATCCCTGGGATTCAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................GGTAAATTTCTTCAAGCCAACGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
................................AAGTATGGCAAGGATGAGGTAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100
.........................................................................................................................................................................................................................................................................................................................................AACCAAGTTGATGACGACA........................................................................................................................................................................................................................................................................................................1911.001100000
.....................................................AATTTCTTCAAGCCAACGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGGTTGTGGTTTTCTGGTC..........................2211.001000001
droWil2
CACCGCCGCCAACTAAGCCTCCCCGCGGAGTCAAGTATGGCAAGGATGAGGTAAAC-------------------------------------------------------------------------------AATA--------------CGGA-----------------------------------ATTATGATTTCCAT-A--------------CATTCTCGTT---------------------------------------------------------------------------GGCTTTAGCCAAACCTAGGCAAAGCGAAAATGATGACGACACTT-------------------------------------------------------------CTTGTTGTTGTCATCACTCCCACTTTTT--A------------------AAAT---------------------------------ATCATCTAATCT-----------------GGACT------------------TTGTT--------------------TCGAATT--CTGCTTGTAGTCAGCAGGCTGTGGCTTCCTGGTCAACGTTATCAAGTCTCTGGGCTTTAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CGCCGCCGCCAACAAAGCCACCCAGAGGCGTTAAATATGGAAAAGATGAGGTACATTTGTTCAAGACAAAACTAAAAATAC-TTTATAAACCC-TAAAT----------------------TGTTCATATAATGTAATAAAA------AACAATTTACAA-TCACCTAAAGTCGTACAAAATACGCTGTGTAA-----------------------------------------------------------------------CATTCTT--T---G-G----------CGAAAA------AGCCGCTT-A-----------------TAAGAAGCTGATGACGACACCAATGCTGATGCGGTCTCATGTTGTAGTTG-------------------------------TTGTTTTTGTTGTTG-CACGCCCTCTTTG-----------AT-----------A--TTTG---------ATAATAAAAAGTGGCAAATA-----------------TTAATTATACTG----GGCGTGTGCTCCTGTGCTTTGTT--ATT-------GT---------TTTTGTTTTTTTGCAGTCCGCCAGCTGTGGCTTTCTCGTCAACGTCATCAAGTCTCTGGGCTTCAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................AACCC-TAAAT----------------------TGTTCATATAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................GAAGCTGATGACGACACCAATGCTGATG............................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
..............................TTAAATATGGAAAAGATGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------TTAATTATACTG----GGCGTG..........................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
...............................TAAATATGGAAAAGATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000100000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTCGTCAACGTCATCAAGTCTCT.........2611.001000000000000000000000001000000000000000000000000000000000000000
..........................GGCGTTAAATATGGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000010000000000000000000000000000000000000000000000000000000
...........................................AGATGAGGTACATTTGTTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................AGTTG-------------------------------TTGTTTTTGTTGTTG-..........................................................................................................................................................................................................................20200.051000010000000000000000000000000000000000000000000000000000000000
droMoj3
CGCCGCCGCCAACAAAGCCACCCAGAGGCGTTAAATATGGAAAGGATGAGGTACATTTATTCAAGACATCGCTAAAAAAAAGTATATGGATAT-TAATG--------TGATCAT-----AAAAACT---------GAGCATAATGTGGAGTAAAT--CAG----TCAAGAGCTATACCAAGAACACGGTGCAACCAAGTTTTGCCC-A----------------------------------------------------------------------------------------TAATACCGCTTGGCAT-----------------TACCAAGCCGATGACGACACCTCTG---ATGCGGACTCATAATATGGTTGTTGTTGTGTTTCTGTTCGTGTTGTTGTGTGGCTGCTTTTGTTGTTA-TACGCCCTTTTTCA--T--------------------AT--ATG----------A----------GAATAACGAATTC-----GTGGATTGTAATTTTGCTG----GGCGTGTGCGCTTGT------TTCATTT-------GT---------ATTT--GGCTTTTCAGTCCGCCGGCTGTGGCTTTCTCGTCAACGTCATCAAATCGCTGGGCTTCAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................GTTAAATATGGAAAGGATGAGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
........................GAGGCGTTAAATATGGAAAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-------GT---------ATTT--GGCTTTTCC...................................................1890.111000010
droGri2
GCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------------------------CA---TGTTTTGCAGTCCGCAGGTTGTGGTTTTCTCGTCAACGTCATCAAGTCGCTGGGTTTCAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 02:42 PM