ID:

dsi_27765

 Coordinate:

2l:23531695-23531844 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.4 -25.2 -25.1

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron-
mature
  1. dsi_27765  2l:23531772-23531789 -
  2. x:19729913-19729930 +
star

Sense Strand Reads

GGCCGATCTTTCAGTTTTACGAGGACCTAAACCTTGTGCGAGGCCACATGGTAAACTCTAAAATACAAAATTAAGAATTAATATTCTTGCATTAATGCTGTATTTACATTGTATCATTTAATTTATAGAATAACACTGTGATGTATGGGTTTCTTGCAACCGGAACCCAATTTTATATTGTTATACCCTTTACTCGTAGAGTAAAAGGGTATATTAGATTCGTTGAAAAGTATGTAACAGGCAGAAGGAA
**************************************************..........(((((((..(((((((((....))))).....))))..)))))))........................((((((.(((((.((.((((((((........)))))))))).))))).))))))................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 O002
Head
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M053
female body
 M023
head
.................................................................................................................................................................................................................................AAAAGTATGTAACAGGCAGAAGGA. 24 0 20 11.90 238 238 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TTCGTTGAAAAGTATGTAACAGGC........ 24 0 20 6.55 131 121 10 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTATAGAATAAGACTGTGTT............................................................................................................ 20 2 2 6.00 12 0 9 3 0 0 0 0 0 0 0 0
...........................................................................................................................TATAGAATAAGACTGTGTT............................................................................................................ 19 2 3 4.67 14 1 9 2 0 1 0 0 1 0 0 0
..........................................................................................................................................................................................................................TTCGTTGAAAAGTATGTAACAGGCAGA..... 27 0 20 4.20 84 33 0 0 32 19 0 0 0 0 0 0
.........................................................................................................................ATTATAGAATAAGACTGTGTT............................................................................................................ 21 3 4 2.00 8 5 1 1 0 0 0 0 0 1 0 0
.........................................................................................................ACATTGTATCATTTAATT............................................................................................................................... 18 0 2 1.50 3 0 0 0 0 0 2 1 0 0 0 0
...........................................................................................................................TATAGAATAAGACTGTG.............................................................................................................. 17 1 3 1.33 4 0 4 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TTCGTTGAAAAGTATGTAACAGGCA....... 25 0 20 1.20 24 0 0 12 12 0 0 0 0 0 0 0
............................................................................................................................ATAGAATAAGACTGTGTT............................................................................................................ 18 2 10 0.90 9 0 9 0 0 0 0 0 0 0 0 0
.........................................................................................................ACATTGTATCATTTAATTT.............................................................................................................................. 19 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................TGTTATACCCTTTACTCGTAGAGTAAA............................................. 27 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
.................TACGATGACCTAAACCTTGTGCGAGG............................................................................................................................................................................................................... 26 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................ACAGTGATGTATGGGTTTTTGGC............................................................................................. 23 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTATAGAATAAGACTGT............................................................................................................... 17 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................CATTGTATCATTTAATTT.............................................................................................................................. 18 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
..........TCAGTTTTACGAGGACCTAAACCTTG...................................................................................................................................................................................................................... 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................TATAGAATAAGACTGT............................................................................................................... 16 1 4 0.50 2 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................ATTATAGAATAAGACTGTG.............................................................................................................. 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TAGAGTAAAAGGGTATATTAGATT.............................. 24 0 7 0.29 2 0 0 0 0 0 0 0 2 0 0 0
............................................................................................................................ATAGAATAAGACTGTGT............................................................................................................. 17 2 15 0.27 4 0 4 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTATAGAATAAGACTGTGTTT........................................................................................................... 21 3 9 0.22 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TCGTTGAAAAGTATGTAACAGGCA....... 24 0 20 0.20 4 0 0 0 3 0 0 0 1 0 0 0
................................................................................................................................................ATGAGGTTCTTGCTACCGGA...................................................................................... 20 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AAAAGTATGTAACAGGCAG...... 19 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0
...............................................................................................................................GAATAAGACTGTGAT............................................................................................................ 15 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................TATAGAATAAGACTGTGT............................................................................................................. 18 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCGTAGAGTAAAAGGGTATATTAGATT.............................. 27 0 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................TCGTAGAATAAAAGGGTATATTAG................................. 24 1 16 0.13 2 0 0 0 0 2 0 0 0 0 0 0
.....................................................................................................................................................................................TATACCCTTTACTCGTAGAGT................................................ 21 0 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................TAGAATAAGACTGTG.............................................................................................................. 15 1 17 0.12 2 0 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................TATAGAATAAGACTG................................................................................................................ 15 1 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................TATAGAATAAGACTGTGTTT........................................................................................................... 20 3 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0
.............................................................................................................................................................................................................................GTTGAAAAGTATGTAACAGGCAGAAGGA. 28 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATATTAGATTCGTTGTAA...................... 18 1 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2
...................................................................................................................................................................................................GTAGAGTAAAAGGGTATATTA.................................. 21 0 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTATAGAATAAGACT................................................................................................................. 15 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TAGAGTAAAATGGTATATTAGATT.............................. 24 1 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AAAAGGGTATATTAGAT............................... 17 0 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AAAAGGGTATATTAGA................................ 16 0 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TACTCGTAGAATAAAAGGGTATAT.................................... 24 1 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................AAGGTTATATTACATTCGTTGAGAAG.................... 26 3 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GTTGAAAAGTATGTAACAGGCAGAA.... 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CAAAAGTATGTAACAGGCAGAAGGAA 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
......TCTTTCATTTTTACAAGG.................................................................................................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................CGTTGAAAAGTATGTAACAGGC........ 22 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................AAAAGTATGTAACAGGCAGAAGG.. 23 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................GAAAAGTATGTAACAGGCCGAAGGA. 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TTCGTTGAAAAGTATGTAATAGGC........ 24 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................GAAAAGTATGTAACAGGCAGAAGGAA 26 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................TAGATTCGTTGAAAAGT................... 17 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCGGCTAGAAAGTCAAAATGCTCCTGGATTTGGAACACGCTCCGGTGTACCATTTGAGATTTTATGTTTTAATTCTTAATTATAAGAACGTAATTACGACATAAATGTAACATAGTAAATTAAATATCTTATTGTGACACTACATACCCAAAGAACGTTGGCCTTGGGTTAAAATATAACAATATGGGAAATGAGCATCTCATTTTCCCATATAATCTAAGCAACTTTTCATACATTGTCCGTCTTCCTT
**************************************************..........(((((((..(((((((((....))))).....))))..)))))))........................((((((.(((((.((.((((((((........)))))))))).))))).))))))................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M053
female body
 SRR902009
testis
 SRR902008
ovaries
 O002
Head
..........................................................................................................................................................................................................................AAGCAACTTTTCATACATTGTCCGTC...... 26 0 20 3.55 71 50 0 21 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TCATACATTGTCCGTCTTCCTT 22 0 20 2.35 47 12 22 0 0 13 0 0 0 0 0 0
..................................................................................................................................................................................................................TATAATCTAAGCAACTTT...................... 18 0 11 1.82 20 0 0 0 20 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ATAATCTAAGCAACTTTTCATACAT.............. 25 0 3 0.67 2 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TCTAAGCAACTTTTCATACATTGTC.......... 25 0 20 0.60 12 0 0 0 0 6 0 0 6 0 0 0
......AGAAAGTCAAAATGCTCCTGGATTT........................................................................................................................................................................................................................... 25 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................AGTAAATTAAATATCTTATTTTGACT............................................................................................................... 26 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................AGAACGTTGGCCTTGGGTTAAAATAT......................................................................... 26 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................GAACGTAGTTCCGACATA................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................AAGAACGTTGGCCTTGGGTTAAAATAT......................................................................... 27 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................AGAAGAAGTTAATTACGACATAAATGT.............................................................................................................................................. 27 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTTCCCATATAATCTAAGCAACTTT...................... 25 0 6 0.50 3 1 0 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GCAACTTTTCATACATTGTCCGTC...... 24 0 20 0.35 7 7 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TTTTCCCATATAATCTAAGCAACTTTT..................... 27 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AGCAACTTTTCATACATTGTCCGTC...... 25 0 20 0.20 4 0 0 3 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................................TTCATACAATGTCCGTCTTCCTT 23 1 20 0.20 4 0 4 0 0 0 0 0 0 0 0 0
....................CTGCTGGATTCGGAACA..................................................................................................................................................................................................................... 17 2 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................TATAATCTAACCAACTTTTCATACA............... 25 1 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................CAACTTTTCATACATTGTCCGTCTTCCTT 29 0 20 0.10 2 0 0 0 0 1 0 0 0 1 0 0
..........................................................................................................................................................................................................................AAGCAACTTTTCATACATTGTCCGTCT..... 27 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CAACTTTTCATACATTGTCCGT....... 22 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0
....................................................................................................................................................................................................................................TCATACATTGTCCGTCTTC... 19 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
....................................................................................................ATAGATGTAACATAGCAA.................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................CTAAGCAACTTTTCATACATTGT........... 23 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0
..........................................................................................................................................................................................................................AAGCAACTTTTCATACATTGTCCGGC...... 26 1 20 0.10 2 0 0 0 0 1 0 0 0 0 1 0
............................................................................................................................................................................................AAATGAGCATCTCATTTT............................................ 18 0 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................TAATCTAAGCAACTTT...................... 16 0 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................CAACTTTTCATACATTGTCCGTCTTCC.. 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TTTTCATACATTGTCCGTCTTCCTT 25 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................................GTAAGCAACTTTTCATACATTGTCCGTC...... 28 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AAGCAACTTTTCATACATTATCCGTCTT.... 28 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................ATCTAAGCAACTTTTCATACATTGTCCGTC...... 30 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CATACATTGTCCGTCTTCCTT 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................AGAACGTACTTTCGAGATA................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................TCTTTTCATACATTGTCCGTCTTCCT. 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................AAAACAATATGGGGAATGAGCATCTCAT............................................... 28 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................AACTTTTCATACATTGTCCGTCTTCCT. 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CAACTTTTCATACATTGTCCGTCTT.... 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GCAACTTTTCATACATTGTCCGTCTTCCTT 30 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AACTTTTCATACATTGTCCGTCTTCCTT 28 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................AGCAACTTTTCATACATTGTCCGTCTTCC.. 29 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CTAAGCAACTTTTCATACATTGTCCGTCT..... 29 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AGCAACTTTTCATACATTGTCCGTCTTCCT. 30 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AAGCAACTTTTCATACATTGT........... 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
CCGGCTCGAATCTCAAAAT....................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................TTTCATACATTGTCCGTCTTCCT. 23 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................TAAGCAACTTTTCATACATTGTCCGTCT..... 28 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CTAAGCAACTTTTCATACATTGTCCGGC...... 28 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CATACATTGTCCGTCT..... 16 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CTTTTCATACATTGTCCGTCTTCCTT 26 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................TAAGCAACTTTTCATACATTGTCCGTCTT.... 29 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................AAGCAACTTTTCATACATTGTCCGG....... 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................AGGGTGGCCTTGGGTT................................................................................ 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:23531645-23531894 - dsi_27765 GGCCGATCTTTCAGTTTTACGAGGACCT------AAACCTTG---TGCGAGGC-----CA------------------------------------------CATGGTAAACTCTAAAATA-----CAAAATTAA---------G----------------------------AATTAATATTC------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------TGC-----------------------------------------------------------------------------------------ATTA--------------A-----TGCTGTATTTACATTGTA--TCATT----------------------------------------------------------T-----AATTT---------A--TAGAATAACACT----------------------------------GT---GATGTATGGG---------------------------TTTCT-------TGCAACCGGAAC----------------------------------------CCA----ATTT----------------TAT-ATTGTTATACCCTTTACTCGTA------GAGTAAA--AGGGTATATTAGATTCGTTG-------AAAAGTATGTAACAGGC--AGAAGGAA
droSec2 scaffold_8:3284652-3284914 + GGCCGATCTTTCAGTTTTACGAGGGCCT------AAACCTTG---TGCGAGGC-----CA------------------------------------------CATGGTAAACTCTAAAATA-----CAAAATTTA---------G----------------------------AATTAATATTC------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------TG---------------------------------------------------------------------------CATTAATCTTTTTCAATTA--------------A-----TGTTGTATTTACATTGTA--TCATT----------------------------------------------------------T-----AA-TT---------A--TAGAATAACACT----------------------------------GT---GAAGTATGGG---------------------------TTTCT-------TGCAACCGGAAC----------------------------------------CAA----ATTT----------------TAT-ATTGTTATACCCTTTACTCGTA------GAGTAAA--AGGGTATATTAGATTCGTTG-------AAAAGTATGTAACAGGC--AGAAGGAA
dm3 chrX:21001148-21001417 + GGCCGATCTTTCAGTTTTACGAGGGCCT------AAACCTTG---TGCAAGGC-----CA------------------------------------------CAAGGTAAACTCTTAAATGCAGCATAAAAATCC---------A------------------------------------------------------------------------------------------------------------------------------------------------CAATAAATCT--------------------------------------------------------------TG---------------------------------------------------------------------------CATTATTCTTCTTCAATTA--------------A-----TGCGGTATTTAAAGTGTA--TCATT----------------------------------------------------------T-----AATTT---------A--TAGAATAACACT----------------------------------GT---GAAGAGTGGG-------------------------G-TTTCT-------TGCAACCGGAAC----------------------------------------CCC----ATTT----------------TAT-AATGTTATACCCTTTACTCGTA------GAGTAAA--TGGGTATACTAGATTCGCTG-------AAAAGTGTATTACAGGCGAAAAAGGAA
droEre2 scaffold_4512:769491-769703 - CCTCGT----------------------------------------TTAAAGC-----AA-------------------------------------------AAGGTTGATTTTAAAATG-----CATGATCGT---------A----------------------------AAT--------------------------------------------------------------------------------------------------------------------------------------GC--------------------------------------------ATTTTTTAATCACGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT----AATACAATTTATTTAAAATACCAAT---------------------------------AGT---AAAG-----A---------------------------CTGAT-------TATAACTGCAAT----------------------------------------TAC----C--GATTCTTTTTAAAAAGTC----ATGCTATACCCGTTAATCGTA------CAGTAAA--AGGGAATACTAGATTCGTTA-------AAAAGTACGTAACAGGC--AGAATGAA
droYak3 2R:557558-557809 - GATTAT----TTATTTTAGCGGGTAGCT------AAGCGCTG---GCCAAGGC-----AA------------------------------------------T--GACAAAAGCAAAGACA-----AAGGAT------------TAATTGATTTTTAAAATTTGTTTATAAAG------------TG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATAGAG--TGCTA----------------------------------------------------------T-----GT-------------------------TTGCGGGTTGGATAAC--------------------T----------------------------TGCATGATA----T-CA-AT----------TTACCCTCTGGTAAAAGATCC-------------------ATATT---CG----TTTA----------------AAC-ATAATTATACCCGTTACTCGTA------GAGTAAA--AGGGTATACTAGATTCGTTG-------AAAAGTATGTAACGGGC--AGAAGGAA
droEug1 scf7180000409227:1688-1912 + ACATT------------------------------------G---AACAAGAC-----TA------------------------------------------CCTCTAATACCCTTCATTA-----TAAAATTAC---------A----------------------------CAT-------------------------------ATCAATATATGTAAATAGTTCTAATTATATTTTTGTCTTGCTTAACATAGCACCCCATGATAGTCCAGGAGTCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATATT----------------------------------GA---C-----------------------------------------------------ATGGATC----------------------------------------TAA----ATTG----------------TAG-ATTTGTATACCCGTTACTCGTA------GAGTAAA--AGGGTATACTAGATTCGTTT-------AAAAGTATGTAACAGGC--AGAAGGAA
droBia1 scf7180000301582:11332-11555 - GCTTCA-------------AGAGG---G------AAACGTTG---CTCGAGGA---------------------------------------------------T-----GTTTAAAAATA-----CAGAG------------------------------------------------------TAGAATTGAATCCTATTTATCTGTCT------------------------------------------------------------------------------CTATTTGTTATTAAGTGGCGAAA--------------------------------------------ATT--------------------------------------------------------------------------------------------------------------------------------------TT--TACTT----------------------------------------------------------T-----AAATT---------A--T-------------------------CATGTAACGATTTA-----------------------------------------------AT------------TGATTTAGAAT----------------------------------------CAT----TTGT----------------TACAGTTGGTATTCATGTTACTCGTA------GAATAAA--ATGATACTTTAGATTCGTCG-------AAAAGTACGTAACAGCT--GCAAGGAA
droTak1 scf7180000415268:23574-23817 + TTTAAT---------TTTACTAACATTT------TTGCTACG---TGC--AGC-----CG------------------------------------------CATGA--AAGCTAAAACTA-----GCGAATCAG---------TAATCA--------------------------------------------TTCCGAGTCGATTGCTG------------------------------------------------------------------------------CAATTGATTTTGCTTTACTGTAG--------------------------------------------ACT--------------------------------------------------------------------------------------------------------------------------------------TT--TGATT----------------------------------------------------------T-----GATTT---------A--TTT-----G-----------------CTT-----------------GT---GACGTATTGT----T----------------------T-TG-AT----------TTAGCTTCTG------------------------------------G--------------------TGGCAGCCAT-ATTTTTATACCCGTTACTCGTA------GAGTAAA--AGGGTATACTAGATTCGTGC-------AAAAGTATGTAACAGCT--AGAAGGAA
droEle1 scf7180000491278:1923583-1923804 - AAAGT----------------------------------TTG---TACAA--C-----AA------------------------------------------AAAGAAAAACTTTAAAATA-----CAGTAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAATGCAAAACCTTTTAAAAATGTTAACATTAATGTTTAAA-GAAT-AC-ACAA---------------------------------------------------------------------------------------------------------------------ACCCAATGTTTAAAGACCTTTTTAATTATGCAGCCCATATAAT---TA----ATGT----------------TAC-ACAATTATACTCGATACTCGTA------GGGTAAA--AGGGTATATTGGATACGTTG-------AAAAGTGTGTGACAGGT--AGAAGAAA
droRho1 scf7180000777121:7184-7445 - TCCAAATCTATATCTCTAATGAGG---TAAAACCAAACTTAT---TGAAATAC-----CATTACGAACAGAAAAACCAAAAATACAATGTTTTTA----A----T-----GTTTAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTTTACAGAAAA------------------TTGAACTTTTCACCTAGATATCGAATAGTTTC--TTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------T--G-------------------------TATATAACTTTTTT-----------------------------------------------GT-------------CGATT---------------------------------------TTCAT-AAA----ATTC----------------TATACTTTTTATACCCGTTACTCGTA------GAGTAAA--AGGGTATATTGTATTCGTGC-------AAAAGTATGTAACAGCT--AGAAGGAA
droFic1 scf7180000453475:1531-1705 - AACTC-------------------------------------------------------------------------------------------------------------TAAAATA-----AAGCACTCA---------C----------------------------ATTT--------------------------------------------------------------------------------------------------------------------------------------------------------CCAATAATTTCCATTAAATCTATATATATTTTTCAATCTTTCTTATGGCAGCTATTTGGTATAATTGTCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAT---------------------------------------TTT-------------A----------------TGA-ATTTTTATACCCTT-----GCA------GAGCAA---AGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAG--TGAAGGAG
droKik1 scf7180000301513:13641-13874 + TCACT----------TTTGCGGCGAGCT------GTTTAAACACTGA--TTTC-----AG-C---------------------------------GAAACGGCAGGGATTATTTTAATGAA--A--CAAATTTTA-----------------------------------AAA------------TG-------TG------------------------------------------------------------------------------------------------------A--------------------------------------------------------------TGC---------------------------------------------------------------AGTAATGCCAGT----------TTCATATG------------------------------------------CTTTAATTTACAATCAGAA------------------------------------------------------------------------ATATA----------------------------------GC---GTAGTTT-AT----T----------------------T-T-TATTTAATTTTAATCAGATT----------------------------------------CGC----ACGC----------------AAC-ATTTTTATACCCTT-------------------GC--AGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAG--TGAAGGAG
droAna3 scaffold_13082:2588521-2588739 + GATCCT----ATTGCTTTCCTAAAA--T------AAATCTTT---TTGAATTC-----CA------------------------------------------TATGACGGA---------A-----CGGAGTCAA---------TGATTG----------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAGTCATTTA--------------T-----TG--GTGATCGAATTGGA--TGGTA----------------------------------------------------------G-----AA-------------------------TCGCGAAATTAACAAT--------------------T----------------------------TATAAAGTGTGGATT-G-----------TGTTACAAT----------------------------------------ATT----TT-G--------------T-CGA-CTTTTTATACCCTT-----GT------------AG--AGGGTATTATAATTTTGGTC-------AAAAGTGTGCAACGCAG--TGAAGGAG
droBip1 scf7180000394746:1784-2022 - CCGAT--CGTTCAGTTATATGGCAGC--------------------------------------------------------------------------------------TATAGGATA-----TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCGGCCGATCCTTATGAAATTTGGGATGTCGTATTATTTTGC---CAGAAATAGCTTTCATGTAAAATTATATTATTTA-------------------TACA--TTATT----------------------------------------------------------T-----AATAT---------A----------------------------CAT-----------------GC---CGTATATTAT----T----------------------T-TC-A----ATATTTATGAATTTCCG------------------------------------G--------------------TGAAACTTAT-ATTTTTATACCCTT-----GC------------AG--AGATTATTATAATTTCGTCC-------AAAAATGTGCAACGCAG--TGAAAGAG
dp5 4_group1:1715744-1715960 - TTTATA---------------AACGCTT------AAACCGTG---TCTATATA---------------------------------------------------TGTTTTCATTTTATATA-----CAAAATAAACCATTCATGTAATTAATTTTTAAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--------------T-----TTCTATATATGAATTTTAATTCATT----------------------------------------------------------C-----AAATG---------A--CAAAAGAACA------------------------------------------------------------------------------------------------------------------------------------------------ACTGTGGAC---------------CGCA-ATTTTCATACCCGATACTCGAA------TTATAGA----AATATGTTATATTTGTGGTGAAAGTGGATGTGGGTGACACTC--AGAAGGAA
droPer2 scaffold_11:1182246-1182424 + TAGAAT-------------------------------------------------------------------------------------------------------------------------AAAAATTA---------A----------------------------AATTAATATTCT----------------------ATCTATGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTAAATATATAGATTCCAATAGGTCCTATACACACTGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCACT---------------------------------------TGAATAGAA----ACGC----------------TAC-TTTATTATATCCGATACTCGAA-------AGTATA--GGGGAATTTTCGATTTGTGGTGGAAGTGGACATGTGTAACACCA--AGAAGGAA
droWil2 scf2_1100000004516:1844453-1844659 + TTTACA---------------AGAACCTA-----AAACGACA---GCTAGCGAAATGGTAAATTGAAATTAGAACTGAACAATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGAGACTTTTGTAGGCAT------------------ATCG--------------------------------------------ATT------------------------------------------------------------------------------------------------------------------------------TTAGATTTGA--AC--------------------------------------------------------------AGGT-AA-CTAGATTAAGT-----------------------------------------AAG----------------------------------------------------------------TTATTATTTT------------------------------------G--------------------AAGAACTTGT-GTTTTTATACCCT---------------GGCAAAA--AGGGTATATTAATTTTGGTC-------AGAAGTGTGCAACGCAT--AGAAGGAA
droVir3 scaffold_12822:135693-135930 + TCTTT------TTATTTTATAACGATCT------AAACGATTACAAA--TAGC-----CG-C---------------------------------AAAACTGT--AGCAAACT------GA-----CAAAAAGGC---------A------------------------------------------------------------------------------------------------------------------------------------------------T------------------ATGA--------------------------------------------ATTTTTGCATCGGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTT----TTGACCGTTT-----------------------------------------GAGTTATTATAAAGGCGTACTGT----C----------------------A-CG-CT----------TTATCGCTT--------------------------------TTCA------------G----------------ATG-ATTTTTATACCCTGAACCCATTAAAAATGGGTATA--AGGGTATATTGTATTTGTGCAAAATCCAAATGTATGTAACAGGT--AAAAGGAA
droMoj3 scaffold_6540:7729459-7729692 + CAGTT-----------TGTAGAATCCCA------AAATCTCC---TTTAAATC-----CA------------------------------------------CACA-----------AATG-----CAA-AT-----------------------------------------------------TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACATGTAAGTATATAATTTATAATATATAATATATAATATATA--ATATA----------------------------------------------------------T-----AA-TT---------T--TTTAATAATATA----------------------------------AT---AAAGAATA-----------------------------TTTTT-------TGTAAATT---TTAT------------------------------------A-TA----AT---------------AT-CCA-TTTTTTATACCCTGAACCCATTGAAAATGGG-AAATCAGGGTGTAATGGTTTTGTT--------AAAAGTATGTAACAGGC--AGAAGGAG
droGri2 scaffold_15245:639404-639639 + TAACACTTGTCAGAATCTACGAA-------------ACTCT-----------------------------------------------------------------------TTCAAATAA-----CTAGACTAT---------G-------------------------AAT------------TA-------TGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------TG----------------------------------------------------------------GAACATTCTGGC----------TTTAAGTG--------------------TTATTCATTTTGAATTTA--TAATT----------------------------------------------------------C-----GAATT---------T--TATGATAAAATC----------------------------------TT---TAAAAAAAAATAGTTTTCGATATGAATACAGTCTAGATT-T-----------GAATACAAT----------------------------------------T--------------------------TCC-TCAATTATACACTT-----AA---AAA-AGGGAAA--AGGGCACAATGAAGTTGTGC-------AAAAGTAAAT------------ACGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGCCGATCTTTCAGTTTTACGAGGACCT------AAACCTTG---TGCGAGGC-----CA------------------------------------------CATGGTAAACTCTAAAATA-----CAAAATTAA---------G----------------------------AATTAATATTC------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------TGC-----------------------------------------------------------------------------------------ATTA--------------A-----TGCTGTATTTACATTGTA--TCATT----------------------------------------------------------T-----AATTT---------A--TAGAATAACACT----------------------------------GT---GATGTATGGG---------------------------TTTCT-------TGCAACCGGAAC----------------------------------------CCA----ATTT----------------TAT-ATTGTTATACCCTTTACTCGTA------GAGTAAA--AGGGTATATTAGATTCGTTG-------AAAAGTATGTAACAGGC--AGAAGGAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGC--AGAAGGA.242011.902380000002380000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAGGC--........24206.5513100000012100010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAGGC--AGA.....27204.208400000033003200190000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTA--TCATT----------------------------------------------------------T-----AATT...............................................................................................................................................................................................................................................................................................1821.50300001200000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAGGC--A.......25201.20240000000120120000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTA--TCATT----------------------------------------------------------T-----AATTT---------.....................................................................................................................................................................................................................................................................................1920.50100000100000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATACCCTTTACTCGTA------GAGTAAA--......................................................2720.50100000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGTA--TCATT----------------------------------------------------------T-----AATTT---------.....................................................................................................................................................................................................................................................................................1820.50100001000000000000
..........TCAGTTTTACGAGGACCT------AAACCTTG---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------GAGTAAA--AGGGTATATTAGATT.......................................2470.29200000000200000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTG-------AAAAGTATGTAACAGGC--A.......24200.20400000000130000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGC--AG......19200.15300000000003000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTA------GAGTAAA--AGGGTATATTAGATT.......................................2770.14100010000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACCCTTTACTCGTA------GAGT...........................................................2180.13100000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTG-------AAAAGTATGTAACAGGC--AGAAGGA.28200.10200000002000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA------GAGTAAA--AGGGTATATTA...........................................21110.09100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA--AGGGTATATTAGAT........................................17140.07100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA--AGGGTATATTAGA.........................................16150.07100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTG-------AAAAGTATGTAACAGGC--AGAA....25200.05100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTG-------AAAAGTATGTAACAGGC--........22200.05100000000100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGC--AGAAGG..23200.05100000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------AAAAGTATGTAACAGGC--AGAAGGAA26200.05100000000100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTCGTTG-------AAAAGT.....................17200.05100000001000000000
droSec2
GGCCGATCTTTCAGTTTTACGAGGGCCT------AAACCTTG---TGCGAGGC-----CA------------------------------------------CATGGTAAACTCTAAAATA-----CAAAATTTA---------G----------------------------AATTAATATTC------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------TG---------------------------------------------------------------------------CATTAATCTTTTTCAATTA--------------A-----TGTTGTATTTACATTGTA--TCATT----------------------------------------------------------T-----AA-TT---------A--TAGAATAACACT----------------------------------GT---GAAGTATGGG---------------------------TTTCT-------TGCAACCGGAAC----------------------------------------CAA----ATTT----------------TAT-ATTGTTATACCCTTTACTCGTA------GAGTAAA--AGGGTATATTAGATTCGTTG-------AAAAGTATGTAACAGGC--AGAAGGAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAGG...........23200.1020020
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTCGTA------GAGTAAA--AGGGT.................................................21200.1020002
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAG............22200.0511000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTG-------AAAAGTATGTAACAGGC--AGA.....25200.0511000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGTA------GAGTAAA--AGGG..................................................18200.0510001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTG-------AAAAGTATGTAACAGGC--AG......25200.0511000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTG-------AAAAGTATGTAACAGG...........22200.0510100
dm3
GGCCGATCTTTCAGTTTTACGAGGGCCT------AAACCTTG---TGCAAGGC-----CA------------------------------------------CAAGGTAAACTCTTAAATGCAGCATAAAAATCC---------A------------------------------------------------------------------------------------------------------------------------------------------------CAATAAATCT--------------------------------------------------------------TG---------------------------------------------------------------------------CATTATTCTTCTTCAATTA--------------A-----TGCGGTATTTAAAGTGTA--TCATT----------------------------------------------------------T-----AATTT---------A--TAGAATAACACT----------------------------------GT---GAAGAGTGGG-------------------------G-TTTCT-------TGCAACCGGAAC----------------------------------------CCC----ATTT----------------TAT-AATGTTATACCCTTTACTCGTA------GAGTAAA--TGGGTATACTAGATTCGCTG-------AAAAGTGTATTACAGGCGAAAAAGGAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AATGTTATACCCTTTACTCGTA------GAG............................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TACGAGGGCCT------AAACCTTG---TGCAAGGC-----...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACACT----------------------------------GT---GAAGAGTGGG-------------------------G-TTTC......................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCT-------TGCAACCGGAAC----------------------------------------CCC----ATTT----------------TAT-A..........................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTA------GAGTAAA--TGGGTATACTA...........................................2231.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCCTTTACTCGTA------GAGTA..........................................................2150.6030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000000000000010000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCGTA------GAGTAAA--TGGGTATACTAG..........................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTAGATTCGCTG-------AAAAGTGT...................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATACCCTTTACTCGTA------GAGTA..........................................................2420.5010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTCGTA------GAGTAAA--TGGGT.................................................2160.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA------GAGTAAA--TGGGTATACTAGAT........................................2430.3310000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------GAGTAAA--TGGGTATACTAGATT.......................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTA------GAGTAAA--TGGGTATACTAGA.........................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATACCCTTTACTCGTA------GAGTAA.........................................................2440.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACCCTTTACTCGTA------GAGT...........................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGATTCGCTG-------AAAAG......................1870.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CCTCGT----------------------------------------TTAAAGC-----AA-------------------------------------------AAGGTTGATTTTAAAATG-----CATGATCGT---------A----------------------------AAT--------------------------------------------------------------------------------------------------------------------------------------GC--------------------------------------------ATTTTTTAATCACGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT----AATACAATTTATTTAAAATACCAAT---------------------------------AGT---AAAG-----A---------------------------CTGAT-------TATAACTGCAAT----------------------------------------TAC----C--GATTCTTTTTAAAAAGTC----ATGCTATACCCGTTAATCGTA------CAGTAAA--AGGGAATACTAGATTCGTTA-------AAAAGTACGTAACAGGC--AGAATGAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------CAGTAAA--AGGGAATACTAGATTCGT....................................2711.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTACGTAACAGGC--AGA.....20130.0810000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAA--AGGGAATACTAGATTC......................................21140.0710100000
droYak3
GATTAT----TTATTTTAGCGGGTAGCT------AAGCGCTG---GCCAAGGC-----AA------------------------------------------T--GACAAAAGCAAAGACA-----AAGGAT------------TAATTGATTTTTAAAATTTGTTTATAAAG------------TG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATAGAG--TGCTA----------------------------------------------------------T-----GT-------------------------TTGCGGGTTGGATAAC--------------------T----------------------------TGCATGATA----T-CA-AT----------TTACCCTCTGGTAAAAGATCC-------------------ATATT---CG----TTTA----------------AAC-ATAATTATACCCGTTACTCGTA------GAGTAAA--AGGGTATACTAGATTCGTTG-------AAAAGTATGTAACGGGC--AGAAGGAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTA----------------------------------------------------------T-----GT-------------------------TTGCGGGTTGGATAAC--------------------T----------------------------TG.....................................................................................................................................................................................................2760.83505000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----------------------------------------------------------T-----GT-------------------------TTGCGGGTTGGATAAC--------------------T----------------------------TG.....................................................................................................................................................................................................2460.33202000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAG--TGCTA----------------------------------------------------------T-----GT-------------------------TTGCGGGTTGGA............................................................................................................................................................................................................................................................25150.20303000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTA----------------------------------------------------------T-----GT-------------------------TTGCGGGTTGGATAAC--------------------T----------------------------.......................................................................................................................................................................................................25160.13201000010000
...TAT----TTATTTTAGCGGGTAGCT------AAGCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2790.11101000000000
...........TATTTTAGCGGGTAGCT------AAGCGCTG---GC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27100.10101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAG--TGCTA----------------------------------------------------------T-----GT-------------------------TTGCGGGTTGGA............................................................................................................................................................................................................................................................24150.07101000000000
.........................................................................................................................................................................................TG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATAGAG--TGCTA----------------------------------------------------------T-----GT-------------------------TTGCGGG.................................................................................................................................................................................................................................................................25160.06101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAG--TGCTA----------------------------------------------------------T-----GT-------------------------TTGCGGGTTGG.............................................................................................................................................................................................................................................................24170.06101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAG--TGCTA----------------------------------------------------------T-----GT-------------------------TTGCGGGTTGG.............................................................................................................................................................................................................................................................23170.06101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAG--TGCTA----------------------------------------------------------T-----GT-------------------------TTGCGGGTTG..............................................................................................................................................................................................................................................................22170.06101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTG-------AAAAGTATGTAACGGGC--AGAA....27180.06101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-------AAAAGTATGTAACGGGC--AGAAGGA.26180.06100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAG--TGCTA----------------------------------------------------------T-----GT-------------------------TTGCGGG.................................................................................................................................................................................................................................................................21180.06101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTAGATTCGTTG-------AAAA.......................21200.05101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGTA------GAGTAAA--AGGGTATACTAGA.........................................27200.05100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTATACCCGTTACTCGTA------GAGTA..........................................................26200.05101000000000
droEug1
ACATT------------------------------------G---AACAAGAC-----TA------------------------------------------CCTCTAATACCCTTCATTA-----TAAAATTAC---------A----------------------------CAT-------------------------------ATCAATATATGTAAATAGTTCTAATTATATTTTTGTCTTGCTTAACATAGCACCCCATGATAGTCCAGGAGTCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATATT----------------------------------GA---C-----------------------------------------------------ATGGATC----------------------------------------TAA----ATTG----------------TAG-ATTTGTATACCCGTTACTCGTA------GAGTAAA--AGGGTATACTAGATTCGTTT-------AAAAGTATGTAACAGGC--AGAAGGAASizeHit CountTotal NormTotal
No Reads
droBia1
GCTTCA-------------AGAGG---G------AAACGTTG---CTCGAGGA---------------------------------------------------T-----GTTTAAAAATA-----CAGAG------------------------------------------------------TAGAATTGAATCCTATTTATCTGTCT------------------------------------------------------------------------------CTATTTGTTATTAAGTGGCGAAA--------------------------------------------ATT--------------------------------------------------------------------------------------------------------------------------------------TT--TACTT----------------------------------------------------------T-----AAATT---------A--T-------------------------CATGTAACGATTTA-----------------------------------------------AT------------TGATTTAGAAT----------------------------------------CAT----TTGT----------------TACAGTTGGTATTCATGTTACTCGTA------GAATAAA--ATGATACTTTAGATTCGTCG-------AAAAGTACGTAACAGCT--GCAAGGAASizeHit CountTotal NormTotal
No Reads
droTak1
TTTAAT---------TTTACTAACATTT------TTGCTACG---TGC--AGC-----CG------------------------------------------CATGA--AAGCTAAAACTA-----GCGAATCAG---------TAATCA--------------------------------------------TTCCGAGTCGATTGCTG------------------------------------------------------------------------------CAATTGATTTTGCTTTACTGTAG--------------------------------------------ACT--------------------------------------------------------------------------------------------------------------------------------------TT--TGATT----------------------------------------------------------T-----GATTT---------A--TTT-----G-----------------CTT-----------------GT---GACGTATTGT----T----------------------T-TG-AT----------TTAGCTTCTG------------------------------------G--------------------TGGCAGCCAT-ATTTTTATACCCGTTACTCGTA------GAGTAAA--AGGGTATACTAGATTCGTGC-------AAAAGTATGTAACAGCT--AGAAGGAASizeHit CountTotal NormTotal
No Reads
droEle1
AAAGT----------------------------------TTG---TACAA--C-----AA------------------------------------------AAAGAAAAACTTTAAAATA-----CAGTAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAATGCAAAACCTTTTAAAAATGTTAACATTAATGTTTAAA-GAAT-AC-ACAA---------------------------------------------------------------------------------------------------------------------ACCCAATGTTTAAAGACCTTTTTAATTATGCAGCCCATATAAT---TA----ATGT----------------TAC-ACAATTATACTCGATACTCGTA------GGGTAAA--AGGGTATATTGGATACGTTG-------AAAAGTGTGTGACAGGT--AGAAGAAASizeHit CountTotal NormTotal
No Reads
droRho1
TCCAAATCTATATCTCTAATGAGG---TAAAACCAAACTTAT---TGAAATAC-----CATTACGAACAGAAAAACCAAAAATACAATGTTTTTA----A----T-----GTTTAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTTTACAGAAAA------------------TTGAACTTTTCACCTAGATATCGAATAGTTTC--TTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------T--G-------------------------TATATAACTTTTTT-----------------------------------------------GT-------------CGATT---------------------------------------TTCAT-AAA----ATTC----------------TATACTTTTTATACCCGTTACTCGTA------GAGTAAA--AGGGTATATTGTATTCGTGC-------AAAAGTATGTAACAGCT--AGAAGGAASizeHit CountTotal NormTotal
No Reads
droFic1
AACTC-------------------------------------------------------------------------------------------------------------TAAAATA-----AAGCACTCA---------C----------------------------ATTT--------------------------------------------------------------------------------------------------------------------------------------------------------CCAATAATTTCCATTAAATCTATATATATTTTTCAATCTTTCTTATGGCAGCTATTTGGTATAATTGTCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAT---------------------------------------TTT-------------A----------------TGA-ATTTTTATACCCTT-----GCA------GAGCAA---AGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAG--TGAAGGAGSizeHit CountTotal NormTotal
No Reads
droKik1
TCACT----------TTTGCGGCGAGCT------GTTTAAACACTGA--TTTC-----AG-C---------------------------------GAAACGGCAGGGATTATTTTAATGAA--A--CAAATTTTA-----------------------------------AAA------------TG-------TG------------------------------------------------------------------------------------------------------A--------------------------------------------------------------TGC---------------------------------------------------------------AGTAATGCCAGT----------TTCATATG------------------------------------------CTTTAATTTACAATCAGAA------------------------------------------------------------------------ATATA----------------------------------GC---GTAGTTT-AT----T----------------------T-T-TATTTAATTTTAATCAGATT----------------------------------------CGC----ACGC----------------AAC-ATTTTTATACCCTT-------------------GC--AGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAG--TGAAGGAGSizeHit CountTotal NormTotal
No Reads
droAna3
GATCCT----ATTGCTTTCCTAAAA--T------AAATCTTT---TTGAATTC-----CA------------------------------------------TATGACGGA---------A-----CGGAGTCAA---------TGATTG----------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAGTCATTTA--------------T-----TG--GTGATCGAATTGGA--TGGTA----------------------------------------------------------G-----AA-------------------------TCGCGAAATTAACAAT--------------------T----------------------------TATAAAGTGTGGATT-G-----------TGTTACAAT----------------------------------------ATT----TT-G--------------T-CGA-CTTTTTATACCCTT-----GT------------AG--AGGGTATTATAATTTTGGTC-------AAAAGTGTGCAACGCAG--TGAAGGAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAATTTTGGTC-------AAAAGTGTGC.................24200.153000003
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTC-------AAAAGTGTGCAACGCAG--........24200.102002000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----GT------------AG--AGGGTATTATAATTTTGGTC-------...........................26200.102020000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----GT------------AG--AGGGTATTATAATTTTGGT...................................25200.051010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-------AAAAGTGTGCAACGCAG--TGAAGGA.26200.051001000
droBip1
CCGAT--CGTTCAGTTATATGGCAGC--------------------------------------------------------------------------------------TATAGGATA-----TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCGGCCGATCCTTATGAAATTTGGGATGTCGTATTATTTTGC---CAGAAATAGCTTTCATGTAAAATTATATTATTTA-------------------TACA--TTATT----------------------------------------------------------T-----AATAT---------A----------------------------CAT-----------------GC---CGTATATTAT----T----------------------T-TC-A----ATATTTATGAATTTCCG------------------------------------G--------------------TGAAACTTAT-ATTTTTATACCCTT-----GC------------AG--AGATTATTATAATTTCGTCC-------AAAAATGTGCAACGCAG--TGAAAGAGSizeHit CountTotal NormTotal
No Reads
dp5
TTTATA---------------AACGCTT------AAACCGTG---TCTATATA---------------------------------------------------TGTTTTCATTTTATATA-----CAAAATAAACCATTCATGTAATTAATTTTTAAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--------------T-----TTCTATATATGAATTTTAATTCATT----------------------------------------------------------C-----AAATG---------A--CAAAAGAACA------------------------------------------------------------------------------------------------------------------------------------------------ACTGTGGAC---------------CGCA-ATTTTCATACCCGATACTCGAA------TTATAGA----AATATGTTATATTTGTGGTGAAAGTGGATGTGGGTGACACTC--AGAAGGAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGATGTG....................21205.40108000000288000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGATGTGGG..................2313.0030000100200
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGATGTGG...................2221.5030100200000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTGGATGTG....................19200.2040000000040
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGATG......................19200.2040000400000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAAGTGGATGTG....................18200.0510100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTGAAAGTGGATG......................20200.0510000100000
droPer2
TAGAAT-------------------------------------------------------------------------------------------------------------------------AAAAATTA---------A----------------------------AATTAATATTCT----------------------ATCTATGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTAAATATATAGATTCCAATAGGTCCTATACACACTGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCACT---------------------------------------TGAATAGAA----ACGC----------------TAC-TTTATTATATCCGATACTCGAA-------AGTATA--GGGGAATTTTCGATTTGTGGTGGAAGTGGACATGTGTAACACCA--AGAAGGAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTGGTGGAAGTGGA........................19150.071000001
droWil2
TTTACA---------------AGAACCTA-----AAACGACA---GCTAGCGAAATGGTAAATTGAAATTAGAACTGAACAATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGAGACTTTTGTAGGCAT------------------ATCG--------------------------------------------ATT------------------------------------------------------------------------------------------------------------------------------TTAGATTTGA--AC--------------------------------------------------------------AGGT-AA-CTAGATTAAGT-----------------------------------------AAG----------------------------------------------------------------TTATTATTTT------------------------------------G--------------------AAGAACTTGT-GTTTTTATACCCT---------------GGCAAAA--AGGGTATATTAATTTTGGTC-------AGAAGTGTGCAACGCAT--AGAAGGAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTTTGGTC-------AGAAGTGTGCA................23200.10202000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTC-------AGAAGTGTGCAACGC............21200.05110000
droVir3
TCTTT------TTATTTTATAACGATCT------AAACGATTACAAA--TAGC-----CG-C---------------------------------AAAACTGT--AGCAAACT------GA-----CAAAAAGGC---------A------------------------------------------------------------------------------------------------------------------------------------------------T------------------ATGA--------------------------------------------ATTTTTGCATCGGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTT----TTGACCGTTT-----------------------------------------GAGTTATTATAAAGGCGTACTGT----C----------------------A-CG-CT----------TTATCGCTT--------------------------------TTCA------------G----------------ATG-ATTTTTATACCCTGAACCCATTAAAAATGGGTATA--AGGGTATATTGTATTTGTGCAAAATCCAAATGTATGTAACAGGT--AAAAGGAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAATGGGTATA--AGGGTATATT............................................25202.805600000000460000000000000000000000100000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGT--AAAAGG..2621.503000000000000000000000000000100000010100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGT--AAAAG...2520.501000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAATGGGTATA--AGGGTATATTGT..........................................27200.408004000000000000000000000000004000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAATGGGTATA--AGGGTATAT.............................................24200.357000000000000000000000007000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAATGGGTATA--AGGGTATATTGTA.........................................28200.306000000000000000000000000000000000060000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGT--A.......21200.204000000000000000000000000100110010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAATGGGTATA--AGGG..................................................19200.153000000003000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGT--........20200.102000000000000000000000000000000001001000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTATA--AGGGTATATTGTATTTGT....................................26200.102000000000000000000000000020000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTAAAAATGGGTATA--AGGGT.................................................23200.102000000000000000000000000000002000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCCAAATGTATGTAACAGG...........23200.051000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAATGTATGTAACAGGT--........19200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATA--AGGGTATATTGTATTTGTGC..................................25200.051000000010000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCCAAATGTATGTAACAGGT--........24200.051000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCATTAAAAATGGGTATA--AGGGT.................................................25200.051000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAATCCAAATGTATGTAACAGGT--A.......28200.051000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATCCAAATGTATGTAACAGGT--........26200.051000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCAAAATCCAAATGTATG..................22200.051000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACCCATTAAAAATGGGTATA--AGGG..................................................27200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTAAAAATGGGTATA--AGGG..................................................22200.051000000000000000000000000000000100000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAATGGGTATA--AGGGTATATT............................................24200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAATCCAAATGTATGTAACAGGT--........25200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
CAGTT-----------TGTAGAATCCCA------AAATCTCC---TTTAAATC-----CA------------------------------------------CACA-----------AATG-----CAA-AT-----------------------------------------------------TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACATGTAAGTATATAATTTATAATATATAATATATAATATATA--ATATA----------------------------------------------------------T-----AA-TT---------T--TTTAATAATATA----------------------------------AT---AAAGAATA-----------------------------TTTTT-------TGTAAATT---TTAT------------------------------------A-TA----AT---------------AT-CCA-TTTTTTATACCCTGAACCCATTGAAAATGGG-AAATCAGGGTGTAATGGTTTTGTT--------AAAAGTATGTAACAGGC--AGAAGGAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGG-AAATCAGGGTGTAATGGTTT.......................................24200.5010530011
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGG-AAATCAGGGTGTAATGGTT........................................23200.408600011
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGG-AAATCAGGGTGTAATGGTTTT......................................25200.204300001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGG-AAATCAGGGTGTAATGGT.........................................22200.153110001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGG-AAATCAGGGTGTA..............................................2170.141000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGG-AAATCAGGGTGTAATGG..........................................21200.102200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGG-AAATCAGGGTGTAATGGTTTTG.....................................26200.102200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGG-AAATCAGGGTGTAATGGTT........................................24200.102010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT--------AAAAGTATGTAACAGGC--AGA.....24200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-AAATCAGGGTGTAATGGTTTTGT....................................25200.051000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGG-AAATCAGGGTGTAATGGT.........................................21200.051100000
droGri2
TAACACTTGTCAGAATCTACGAA-------------ACTCT-----------------------------------------------------------------------TTCAAATAA-----CTAGACTAT---------G-------------------------AAT------------TA-------TGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------TG----------------------------------------------------------------GAACATTCTGGC----------TTTAAGTG--------------------TTATTCATTTTGAATTTA--TAATT----------------------------------------------------------C-----GAATT---------T--TATGATAAAATC----------------------------------TT---TAAAAAAAAATAGTTTTCGATATGAATACAGTCTAGATT-T-----------GAATACAAT----------------------------------------T--------------------------TCC-TCAATTATACACTT-----AA---AAA-AGGGAAA--AGGGCACAATGAAGTTGTGC-------AAAAGTAAAT------------ACGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 04:57 AM