ID:

dsi_27744

 Coordinate:

3r:21567916-21568065 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.8 -13.64 -13.5

Flybase annnotation

five_prime_UTR [3r_21567895_21567915_-]; CDS [3r_21567099_21567894_-]; exon [3r_21567099_21567915_-]; intron [3r_21567916_21568788_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGAAATTTTAGGCAAAATTTTTAGTTTTTTTTTTTACCTCGAAAGATTTCAAAATTCTGTGCTTACGCAATGGTTTCCAATCCTCCACTGCGCTGCGGAATTCGATAGCTAACTTATTAACATCGAATGTCCGCTTCTCTTTTTCATCCAACACAATACCACCACACCAAATCAATCGTAAATGGATCTTCGTACTGCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAA
************************************************************************************..........((((((((((((...............))))))).)))))...........(((((................................)))))*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 M024
male body		 M053
female body
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
....................................................................................................................................................................................................GTAGAACTACACTCGAATCT.................................. 20 1 1 4.00 4 2 0 1 1 0 0 0 0
....................................................................................................................................................................................................GTAGAACTACACTCGAATCTCAAAA............................. 25 1 1 2.00 2 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CTCGAATCTCAAAAATGACCACC.................... 23 0 1 2.00 2 0 2 0 0 0 0 0 0
.................................................................................................................................................................................................AGTGTAGAACTACACTCGAATCT.................................. 23 2 1 2.00 2 0 0 2 0 0 0 0 0
................................................................................................................................................................................................AAGTGTAGAACTACACTCGAATC................................... 23 3 1 2.00 2 0 0 2 0 0 0 0 0
...........................................................................................................................................................................................CTTCGTACTGCAGAACTA............................................. 18 0 1 2.00 2 0 2 0 0 0 0 0 0
.......................................................................................................................................................................................................GAACTACACTCGAATCTCAAAAATGAC........................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CTCAAAAATGACCACCTACTT............... 21 0 1 1.00 1 0 0 0 1 0 0 0 0
.........................................................................................................................................................................AATCAATCGTAAATGGAT............................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................CACTCGAATCTCAAAAATGACCACC.................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................GTAGAACTACACTCGAAT.................................... 18 1 2 1.00 2 1 0 0 1 0 0 0 0
....................................CCTCGAAAGATTTCAAAAT................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................CTACACTCGAATCTCAAAAATGACCAC..................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................CAATCGTAAATGGATCTTCGTACT...................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................CCACTGCGCTGCGGAATTCGATAGCT............................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0
..........................................................................................................................................................................ATCAATCGTAAATGGATCT............................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................CGAATCTCAAAAATGACCA...................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0
................................................................................................................................................................................................AAGTGTAGAACTACACTCGAATCT.................................. 24 3 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................AATGGATCTTCGTACTGCAGAACT.............................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................TTCGTACTGCAGAACTACACTCGA...................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CACTCGAATCTCAAAAATGACCCCC.................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................GTAGAACTACACTCGAATCTCAAAAAT........................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGAACTACACTCGAATCTC................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0
..........................TTTTTTTTTACCTCGAAAGATT.......................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................AACTACACTCGAATCTCAAAAA............................ 22 0 1 1.00 1 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................ATGACCACCTACTTCAACTACCCC..... 24 0 1 1.00 1 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................GTAGAACTACACTCGAATCTCAAA.............................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................TTCGAACTGCAGAACTACACTCGA...................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................................AAGGATTTAAATATTCTGTGCT........................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 1 0
..................................................AATATTCTGTGCATACGC...................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

GCTTTAAAATCCGTTTTAAAAATCAAAAAAAAAAATGGAGCTTTCTAAAGTTTTAAGACACGAATGCGTTACCAAAGGTTAGGAGGTGACGCGACGCCTTAAGCTATCGATTGAATAATTGTAGCTTACAGGCGAAGAGAAAAAGTAGGTTGTGTTATGGTGGTGTGGTTTAGTTAGCATTTACCTAGAAGCATGACGTCTTGATGTGAGCTTAGAGTTTTTACTGGTGGATGAAGTTGATGGGGTCGTT
***************************************************************..........((((((((((((...............))))))).)))))...........(((((................................)))))************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 O002
Head
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
........................................................................................................................................................................................CTAGCAGCCTGACATCTTGAT............................................. 21 3 1 8989.00 8989 6066 2911 8 3 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................CTAGCAGCCTGACATCTTGA.............................................. 20 3 6 3293.33 19760 15434 3498 485 173 90 54 3 18 3 2 0 0 0
......................................................................................................................................................................................ACCTAGCAGCCTGACATCTTG............................................... 21 3 1 8.00 8 6 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGAAGCCTGACATCTTGA.............................................. 20 2 1 5.00 5 4 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGGAGCCTGACATCTTGA.............................................. 20 3 3 4.67 14 11 3 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................ACCTAGCAGCCTGACATCTTGA.............................................. 22 3 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGCAGCATGACATCTT................................................ 18 2 2 2.50 5 4 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TAGCAGCCTGACATCTTGAT............................................. 20 3 5 2.20 11 2 3 1 1 0 0 2 0 2 0 0 0 0
...................................................................................................................................................................................................TCGTCTTGATGTGAGCTTAGA.................................. 21 1 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GAGCTTAGAGTTTTTACTGGTGGAT.................. 25 0 1 2.00 2 0 0 0 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................CTAGCAGCCTGACGTCTTGA.............................................. 20 2 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGCAGCATGACATCTTGAA............................................. 21 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGCAGCCTGACGTCTTGAG............................................. 21 3 3 1.67 5 2 0 1 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................ACCTAGCAGCCTGACATCTT................................................ 20 3 6 1.67 10 8 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGGAGCCTGACATCTTG............................................... 19 3 11 1.64 18 16 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ACTAGAAGCCTGACATCTTGA.............................................. 21 3 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGCAGCGTGACATCTTGA.............................................. 20 3 3 1.33 4 4 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGCAGCCTGACTTCTTGA.............................................. 20 3 19 1.16 22 15 7 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TAGCAGCCTGACATCTTGATGT........................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................AGCTTAGAGTTTTTACTGGTGGAT.................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................CGCCTTAAGCTATCGATTGAATAAT................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................TTGTAGCTTACAGGCGAAGAGAAAAAGT........................................................................................................ 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGAAGCCTGACATCTTGAA............................................. 21 3 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................GCGTTACCAAAGGTTAGG....................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................CTAGCAGCATGACATCTTGAT............................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AACTAGCAGCATGACATCTTGA.............................................. 22 3 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TTACAGGCGAAGAGAAAAAGTA....................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GGTCTTGATGTGAGCT...................................... 16 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGCAGCATGACATCTTG............................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................CCTAGCAGCATGACATCTTGA.............................................. 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGCAGCCTGACGTCTTG............................................... 19 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................ACCCAGAAGCACGACGTCTTGAT............................................. 23 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................GTAGGTTGTGTTATGGTGG....................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGTAGCCTGACATCTTGA.............................................. 20 3 12 0.92 11 8 0 0 0 0 0 1 0 2 0 0 0 0
........................................................................................................................................................................................CTAGTAGCCTGACATCTTGAT............................................. 21 3 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGAGGCCTGACATCTTGA.............................................. 20 3 11 0.64 7 6 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGCAGCATGACATCT................................................. 17 2 10 0.60 6 5 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGGAGCCTGACATCTTGAT............................................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................GGGGTTATGGTGGTGTGGTT................................................................................ 20 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................AACTAGCAGCATGACATCTT................................................ 20 3 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGAAGCCTGACATCTTGAG............................................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GGTTGTGTTATCCTGGTCTG................................................................................... 20 3 6 0.50 3 0 0 0 0 0 0 3 0 0 0 0 0 0
......................................................................................................................................................................................AACTAGCAGCCTGACGTCTTG............................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TAGAAGCCTGACATCTTGA.............................................. 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GTGGCTGAAGTCCATGGGGTC... 21 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTTGCTGGCGGATGAAGATG........... 20 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ACTAGCAGCCTGACGTCTTGA.............................................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................CCTAGCAGCCTGACATCTTGA.............................................. 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................AACTAGCAGCATGACATCTTG............................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTTTGACGGGTGGATGAAGGT............ 21 3 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0 0 0
......................TCAAAAAAAAAAACGGAGATT............................................................................................................................................................................................................... 21 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGCAGCCTGACGTCTTGAA............................................. 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGCAGCTTGACATCTTGAT............................................. 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TAGCAGCATGACATCTTGAG............................................. 20 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TAGCAGCCTGACGTCTTGA.............................................. 19 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................AAAAAAATGGAGGTTTGTAA.......................................................................................................................................................................................................... 20 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................CCTAGGAGCCTGACATCTTG............................................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGCAGGATGACATCTTGA.............................................. 20 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGCAGCATGACATCCTGA.............................................. 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TACCTAGCAGCCTGACATCT................................................. 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................TAGCAGCATGACATCTTG............................................... 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ACTAGCAGCATGACATCTTGA.............................................. 21 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TAGCAGCATGACATCTT................................................ 17 2 10 0.20 2 0 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGCAGCCTGACCTCTTGA.............................................. 20 3 20 0.20 4 3 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................CTAGAAGCCTGACAACTTGA.............................................. 20 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ACTAGCAGCCTGACGTCTTG............................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TATTACGGGTGGATGAAGGTG........... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGAAGCCTGACATCTTTA.............................................. 20 3 14 0.14 2 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGGAGCCTGACTTCTTGA.............................................. 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................AGAAGGTTGTGTTAT............................................................................................ 15 1 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GTGAGCGTAGAGTTT.............................. 15 1 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 2 0
..............................AAAAATGGAGCTCTTT............................................................................................................................................................................................................ 16 2 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TGGCTGAAGTCCATGGGGT.... 19 3 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................AAAAAAAAGATGGAGGTTACT............................................................................................................................................................................................................ 21 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ACTAGCAGCATGACATCTT................................................ 19 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................AGAAGCCTGACATCTTG............................................... 17 2 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................AAAAAAAAAAATGTGGCTTT.............................................................................................................................................................................................................. 20 2 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TAGCAGCATGACTTCTT................................................ 17 2 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................AAAAAAAAAATGTAGCTT............................................................................................................................................................................................................... 18 1 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TAGCAGCCTGACATCTTGA.............................................. 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................AGGTGACGCGACGCCAG...................................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGCAGCCTGACTTCTTG............................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................AGCAGCCTGACGTCTTG............................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:21567866-21568115 - dsi_27744 CGA-----------AATTTTAGGCAAAATTTTTAGTTTTTTTT-----TTTACCTCGAAAGATTTCAAAATTCTGTGCTTACGCAATGGTTTCCAATCCTCCACTGCGCTGCGGAATTCGATAGCTAACTTATTAACATCGAATGTCCGCTTCTCTTTTTCATCCAACACAATACCACCA---------------------------------------------CACCAAATCA-A---------------------------------TCG-TAAATGGATCTTCGTACTGCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAA
droSec2 scaffold_13:863661-863912 - CGA-----------AATTTTAGGCAAAATTTTTAGTTTTTTTTT--T-TTTACCTCGAAAGATTTCAAAATTCTGTGCTTACGCAATGGCTTCCAATCCTCCACTGCGCTGCGGAATTCGATAGCTAACTTATTAACATCGAATGTCCGCTTCTCTTTTTCATCCAACACAATAACACCA---------------------------------------------CACCAAATCA-A---------------------------------TCG-TAAATGGGTCTTCGTGCTGCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAA
dm3 chr3R:22083714-22083963 - CGA-----------AATTTTAGTCCAAATTTTTAGTTTTATTT-----TTTACCTCGAAATATTTCAAAATTCTGTGCTTACGCAATGGTTTCCAATCATCCGCGCCGCTGCGGAATTCGATAGCTAGCTTATTAAAACACAATGTCCGCTACTCTTTTTCATCCAACAAAATAACACCA---------------------------------------------CACCAAATCA-A---------------------------------ACG-TAAATGGATCTTCGTGCTGCAGAACTACACTCGAATCTCAAAAATGACGACCTACTTCAACTACCCCAGCAA
droEre2 scaffold_4820:5964891-5965144 + TTT---C----AAAAAAATCTGTCAAAATTTTAAGTTTTATTT-----TCTACCCCAAACGATTTCAAAATTCTGTGCCTACACAATGCTTTCCTATTATGCACTCCGCTTCGGAGTACGATAGCTAAATTATTAATATCCAATGTCCGCTTCTCTCTTGCATCCAACAAAACAACAACC---------------------------------------------CACCGACTCA-A---------------------------------ATG-CAAATGGATTTACGTGCTGCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAA
droYak3 3R:24400161-24400428 + TTT---CCCAAAAAAAAAACTGTCAAAATTTTAAGTTCTTATT---T-TTTACCCCAAACGATTTCAAAATTCTGTGCTTACACAATGGTTTCTTATCATCCACGCCTCTTCGGAATACGATAGCTAAATTTCTAACATCCAATGTCCGCTTCTCTTTTTCATCAAACCAAACAACACCA------------------------------------ACAACTCCGCATCGACTCA-A---------------------------------ATG-CAAATGGATTTGCGTGCTGCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAA
droEug1 scf7180000409682:516156-516431 + CCA-----------AAATCCTGTCAAATTTTTTCGTTTAGTTTA--G-TTTCCCCTTAAAAAATTCAAAATTCTGCGTTTAAGTAATGCATTGCTATTTCGGGAACCGTTTTCGAAACCGTTAACTAAATTTCTAATAACAAATGTTCAACCTTCTTATTCTTCCATCAAAAATGCATCA---------------------------------------------AAAAAATTCAC-------A-TTTTCCATTGG-AACTAAAT-CTCGTCG-AAAATCGATTCCCGTGCTGCAGAACAACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAA
droBia1 scf7180000302113:2303900-2304161 - GAA-----------AA-CCCTACGAAAATTCCTAGTTATCC-------GTCCCCCAAAAAGGCTTCAAAATTCTTCGTTTAAGTCATGGCTTTTTATTTTCTAAGCCTCGAGCAACCCACCTAGCCAAATTACTAACTTGCGAACTTCGATCTTCTTATTTTTCCACCAAAAACGCTCCA---------------------------------------------C-----------------CCCTGG-CGATCG-GCCTGAATCCGAATGG-GAAATGGATTCGCGTCACGCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAA
droTak1 scf7180000415851:59329-59573 + AGA-----------AAGTTCTACCAAAATTCCTAGTTTCCTC-------TTCCCTAAAAAAGCTTCAAAATTCTTCGTTTAAGCAATGGATTTTTACTTTCAAAGCCGCTTTTATATCCCCTAGTCAAATTACTAACAGGCAATTTCCACTCTTCTTATTCTTCCACCAAAAATCCACC-----------------------------------------------------------------TTTGG-CGAT----------------TGG-AAAATGGACTCGCGTCATGCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAA
droEle1 scf7180000491261:609817-610106 + TTT-----------AGAGATTGACCAAATTTTTGGTTTTTTTCCCCT-TTTCCCCTTAACGGCTTCAAAATTCTTCGTTTAAACCACGGCTTTTTGTTTTGGAACTCGTTTCCGAATCCGCTATGCAAATTATTAACAAACAATCTCCGCTCTTCTTATTTCTCCACCAAATATACACCAC---------------------------------CTGCTCATCCGCATCAATTTC--------CCTTGG-CGATTG-GTCTAAATCCGTTTGG-AAAATGGATTCCGGTTATGCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAA
droRho1 scf7180000780019:59966-60228 - AAATTTC----G--AAGTCCTCCTAAATTGTTTTGT------------TTCCCTCTCAACGGCTTCAAAATTCTTAGTTTAAGCAATGGCTCTCTGTTTTGGAAACCGTTTTCGAATCCGCTAACTAAATTATTAACAAAACCGCTCCGATCTTCTTATTTTTCCACCAAAAATCCACCA---------------------------------------------C-----------------CTCTGG-CGATTG-GACTAAATCCGCATAC-AAAATGGATTCCGGTGATGCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAA
droFic1 scf7180000454055:1986208-1986495 - CAA-----------AA--CCTTTCAAAATTTTTAGTTTTTCTTTTTT-TGGACCTTTATATCTTTCAAAATTTTTTCCCTAAGCAATGGCTTACTACTCTCTAAGCCGTTGCCGAAAGCGGTAACAAAATTACTAACATGCAATTTCCGCTTTTCTTATTCTTTCACCAAAAATCCACCTT---------------------------------CCGCCAATCTACATCAACTGC--------CTTCGG-TGACTG-GACCAAATTCGATTGG-AAAATGGATTCGCGTGATGCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAA
droKik1 scf7180000301714:159861-160151 - CAG-----------AATATATACATAAATTTATACTGCTTTTTTAGGCGTAACATTCGACAGCTTCAAAATTCTCCGTTTAAACCATGGCGCACTTTTTCGCAATACGGTTTCGTGTTCCATAGCCAAAATACTAACTAGCCACCTCTCCCATTCTTATTCTTTCACCACAAATGGACTAC---------------------------------CTGCTTTCCAACACCATCTCT--------TGCTGG-GAATCG-AACGAAATACTCTGGG-AAAATGGATCGGCGTGCTGCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAA
droAna3 scaffold_13340:23619599-23619889 - GAA---------------CTTTTCAAAATTTTTCGTTTCTATC---G-G-TCTTTTTAAATTCTTCAAAATTCAGCATTTAGGCCATGGCGTTCTTTTTCCTAAACCGCTTTCGAATTCAATAACAAAAATACTAAATAGCCAAAAATTCTTTTCTT-TTCACGCATCATCAC------------ACACCCCATTTTCACAATGGGTCACAATACCGCTATTTACCACCAATGTA---------CCTGC-GGAACG-GGCGAAATT-----CA-AAAATGGCT-----TCCTTCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAA
droBip1 scf7180000396413:18426-18718 - AGA-----------AC---TGCTCAAAATTTTTGTTTTCTTTC---G-GTCCTTTTCAAAATTATCAAAATTCAGCATTTAGGCCATGGCGTTCTTTTTCCTAAACCGTTTCCAAATTCGATAACAAATATACTAAAGAGCCAATTATTCCTTTCTT-TCCATTCATCTTCAC------------ACACCCTACTGCTACAATGGGGCACGATACCGCTATTTACCACCAATTCA-C--------CTGC-GAAACG-GACGAAATT-----CC-AAAATGGCT-----TCCTTCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAA
dp5 2:18923920-18924136 + A----------------------------------------------------------AGCCGTCAAAATTCTTCGTTTAGGACTTTCTTTGGTGTCCTGCAAGCCATTGCAGAACCCAGTTTATCGCCTACTAACATGTCACGAACACTCTCTTTCTTCTTGCCACA--ACTGCGCGA---------------------------------------------ATCCGTCGCA-C--------CCAT-CAATTGGA-------------AC-AAAATGGACTCGCATCTTGCAGAACTACACTCGAATCTCAAACATGACCACCTACTTCAACTACCCCAGCAA
droPer2 scaffold_3:1648374-1648590 + A----------------------------------------------------------AGCCGTCAAAATTCTTCGTTTAGGACTTTCTTTGGTGTCCTGCAAGCCATTGCAGAACCCAGTTTATCGCCTACTAACATGTCACGAACACTCTCTTTCTTCTTGCCACA--ACTGCGCGA---------------------------------------------ATCCGTCGCA-A--------CCAT-CAATTGGA-------------AA-AAAATGGACTCGCATCTTGCAGAACTACACTCGAATCTCAAACATGACCACCTACTTCAACTACCCCAGCAA
droWil2 scf2_1100000004943:6918857-6919118 - TTT-------------------TCA-AATTTGTCTCTTGTAAT---A-A-CCAAGGAAGGTTCTTCAAAATTCTTTGTGCTAAACACATTATGATTTCGTTTAGAGTATTTACAAATTCGCAACGCCGTTTAATAACTTGTAATTTTCATTCTGGTTCCTCTTTTC---AAAATCAACAACCACA-------ACTTTCA--------------------------CAACAAACAA-AACAATT-TCTGG-CG-------------------TC-AAAATGCTGCCATCCTCTGCAGAACTACACTCGAATCTCAAACATGACTACCTACTTCAACTACCCCAGCAA
droVir3 scaffold_13047:4583516-4583572 - A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGAATTTTACGCGAATCTCAAAGATGACCACCTACTTCAACTATCCCAGCAA
droMoj3 scaffold_6540:21805583-21805664 + CGC-----------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCA-A---------------------------------ACTCAAAATGGATC-----ATTTCAGAACTTTACGCAAGTATCAAAGATGACCACCTACTTCAACTATCCCAGCAA
droGri2 scaffold_14906:10029349-10029405 - A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAATTACACGCGAATCTCAAAGATGACCACCTACTTCAACTATCCCAGCAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGA-----------AATTTTAGGCAAAATTTTTAGTTTTTTTT-----TTTACCTCGAAAGATTTCAAAATTCTGTGCTTACGCAATGGTTTCCAATCCTCCACTGCGCTGCGGAATTCGATAGCTAACTTATTAACATCGAATGTCCGCTTCTCTTTTTCATCCAACACAATACCACCA---------------------------------------------CACCAAATCA-A---------------------------------TCG-TAAATGGATCTTCGTACTGCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................CTCGAATCTCAAAAATGACCACC....................2312.00220000000000000000
...........................................................................................................................................................................................................................................................................................CTTCGTACTGCAGAACTA.............................................1812.00220000000000000000
.......................................................................................................................................................................................................................................................................................................GAACTACACTCGAATCTCAAAAATGAC........................2711.00100100000000000000
......................................................................................................................................................................................................................................................................................................................CTCAAAAATGACCACCTACTT...............2111.00100010000000000000
......................................................................................................................................................................................................................................AATCA-A---------------------------------TCG-TAAATGGAT...............................................................1811.00110000000000000000
.............................................................................................................................................................................................................................................................................................................CACTCGAATCTCAAAAATGACCACC....................2511.00100100000000000000
....................................................CCTCGAAAGATTTCAAAAT...................................................................................................................................................................................................................................................................................1911.00100010000000000000
..........................................................................................................................................................................................................................................................................................................CTACACTCGAATCTCAAAAATGACCAC.....................2711.00100100000000000000
.........................................................................................................................................................................................................................................CA-A---------------------------------TCG-TAAATGGATCTTCGTACT......................................................2411.00100100000000000000
....................................................................................................CCACTGCGCTGCGGAATTCGATAGCT............................................................................................................................................................................................................................2611.00101000000000000000
.......................................................................................................................................................................................................................................ATCA-A---------------------------------TCG-TAAATGGATCT.............................................................1911.00110000000000000000
.................................................................................................................................................................................................................................................................................................................CGAATCTCAAAAATGACCA......................1911.00100001000000000000
....................................................................................................................................................................................................................................................................................AATGGATCTTCGTACTGCAGAACT..............................................2411.00100100000000000000
............................................................................................................................................................................................................................................................................................TTCGTACTGCAGAACTACACTCGA......................................2411.00100100000000000000
......................................................................................................................................................................................................................................................................................................AGAACTACACTCGAATCTC.................................1911.00100010000000000000
.....................................TTTTTT-----TTTACCTCGAAAGATT..........................................................................................................................................................................................................................................................................................2211.00110000000000000000
........................................................................................................................................................................................................................................................................................................AACTACACTCGAATCTCAAAAA............................2211.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................ATGACCACCTACTTCAACTACCCC.....2411.00100010000000000000
droSec2
CGA-----------AATTTTAGGCAAAATTTTTAGTTTTTTTTT--T-TTTACCTCGAAAGATTTCAAAATTCTGTGCTTACGCAATGGCTTCCAATCCTCCACTGCGCTGCGGAATTCGATAGCTAACTTATTAACATCGAATGTCCGCTTCTCTTTTTCATCCAACACAATAACACCA---------------------------------------------CACCAAATCA-A---------------------------------TCG-TAAATGGGTCTTCGTGCTGCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................CGAATCTCAAAAATGACCACC....................2112.0021100
...........................................................................................................................................................................................................................................................................................................TACACTCGAATCTCAAAAAT...........................2011.0010010
.............................................................................................................................................................................................................................................................................................................................ATGACCACCTACTTCAACTACCC......2311.0011000
............................................................................................................................................................................................................................................................................................................................AATGACCACCTACTTCAACTACCCCA....2611.0011000
.................................................................................CGCAATGGCTTCCAATCCTCCAC..................................................................................................................................................................................................................................................2311.0010001
.....................................................CTCGAAAGATTTCAAAATTCTGTG.............................................................................................................................................................................................................................................................................2411.0011000
............................................................................................................................................................................................................................................................................................................................AATGACCACCTACTTCAACTACCC......2411.0011000
.............................................................................................................................................................................................................................................................................................................................ATGACCACCTACTTCAACTACCCC.....2411.0011000
................................................................................................................................................................................................................................................................................................................TCGAATCTCAAAAATGACCACC....................2211.0011000
dm3
CGA-----------AATTTTAGTCCAAATTTTTAGTTTTATTT-----TTTACCTCGAAATATTTCAAAATTCTGTGCTTACGCAATGGTTTCCAATCATCCGCGCCGCTGCGGAATTCGATAGCTAGCTTATTAAAACACAATGTCCGCTACTCTTTTTCATCCAACAAAATAACACCA---------------------------------------------CACCAAATCA-A---------------------------------ACG-TAAATGGATCTTCGTGCTGCAGAACTACACTCGAATCTCAAAAATGACGACCTACTTCAACTACCCCAGCAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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..............................................................................................................................................................................................................................................................................................CGTGCTGCAGAACTACACTCGAAT....................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.....................................................................................................................................................................................................................................................................................ATGGATCTTCGTGCTGCAG..................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
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..................................................................................................................................................................................................................................................................................TAAATGGATCTTCGTGCTGCAGAAC...............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................................................................................................................................................................................................................................................................................................................GACGACCTACTTCAACTACC.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................GATCTTCGTGCTGCAGAACTAC............................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.....................................................................................................................................................................................................................................................................................ATGGATCTTCGTGCTGCA...................................................1811.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................CGAATCTCAAAAATGACGAC.....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................AACTACACTCGAATCTCAAA..............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..................................................................................................................................................................................................................................................................................................................GAATCTCAAAAATGACGA......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................GTGCTGCAGAACTACACTCGAATCTCA................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................ACACTCGAATCTCAAAAATG..........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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......................................................................................................................................................................................................................................................................................................AGAACTACACTCGAATCTCA................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................AAATCA-A---------------------------------ACG-TAAATGGATCTTCGTGCT......................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CGCCGCTGCGGAATTCGA.................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................CG-TAAATGGATCTTCGTGCTG.....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
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...............................................................................................................................................................................................................................................................................................................................GACGACCTACTTCAACTACCCCA....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..................................................................................................ATCCGCGCCGCTGCGGAATTCGATAGCTAG..........................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
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...........................................................................................................................................................................................................................................................................................................TACACTCGAATCTCAAAAA............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................ACACTCGAATCTCAAAAAT...........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................GACGACCTACTTCAACTA.........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................A---------------------------------ACG-TAAATGGATCTTCGTGCTG.....................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
......................................................................................................................................................................................................................................................................................................................CTCAAAAATGACGACCTACTT...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................AAAATGACGACCTACTTCAACTACCA......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAGCTTATTAAAACACAATGTCCGC....................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................CTACACTCGAATCTCAAAA.............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTT---C----AAAAAAATCTGTCAAAATTTTAAGTTTTATTT-----TCTACCCCAAACGATTTCAAAATTCTGTGCCTACACAATGCTTTCCTATTATGCACTCCGCTTCGGAGTACGATAGCTAAATTATTAATATCCAATGTCCGCTTCTCTCTTGCATCCAACAAAACAACAACC---------------------------------------------CACCGACTCA-A---------------------------------ATG-CAAATGGATTTACGTGCTGCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................AAAATGACCACCTACTTCAACTA.........2312.0022000000
.......................................................................................................................................................................................................................................................................................................GAACTACACTCGAATCTCA................................1912.0022000000
.................................................................................................................................................................................................................................................................................................................CGAATCTCAAAAATGACCACCTACTTCA.............2812.0022000000
............................................................................................................................................................................................................................................................................................................................AATGACCACCTACTTCAACTACCCCAGC..2812.0022000000
..................................................................................................................................................................................................................................................................................................................GAATCTCAAAAATGACCACC....................2012.0022000000
..............................................................................................................................................................................................................................................................................................................ACTCGAATCTCAAAAATGACCACCTACT................2811.0011000000
..............................................................................................................................................................................................................................................................................................................................TGACCACCTACTTCAACTACCCCAGCA.2711.0011000000
...............................................................................................................................................................................................................................................................................................................CTCGAATCTCAAAAATGACCACCTAC.................2611.0011000000
...............................................................................................................................................................................................................................................................................................................CTCGAATCTCAAAAATGACCACCTA..................2511.0011000000
................................................................................................................................................................................................................................................................................................................TCGAATCTCAAAAATGACCACCTA..................2411.0011000000
........................................................................................................................................................................................................................................................................................................................CAAAAATGACCACCTACTTCA.............2111.0011000000
.........................................................................................................................................................................................................................................................................................................ACTACACTCGAATCTCAAAA.............................2011.0011000000
........................................................................................................................................................................................................................................................................................................AACTACACTCGAATCTCA................................1811.0010000010
...................................................................................................................................................................................................................................................................................................................AATCTCAAAAATGACCACCTACTTCA.............2611.0011000000
.................................................................................................................................................................................................................................................................................................................CGAATCTCAAAAATGACCACC....................2111.0011000000
..........................................................................................................................................................................................................................................................................................................................AAAATGACCACCTACTTCAACTACC.......2511.0011000000
..............................................................................................................................................................................................................................................................................................................................TGACCACCTACTTCAACTACCCC.....2311.0011000000
...............................................................................................................................................................................................................................................................................................................................GACCACCTACTTCAACTACCCCAGC..2511.0010100000
..............................................................................................................................................................................................................................................................................................................ACTCGAATCTCAAAAATGACCA......................2211.0011000000
...........................................................................................................................................................................................................................................................................................................TACACTCGAATCTCAAAAATGACCACC....................2711.0010100000
........................................................................................................................................................................................................................................................................................................AACTACACTCGAATCTCAAAAA............................2211.0011000000
...............................................................................................................................................................................................................................................................................................................................GACCACCTACTTCAACTACCC......2111.0011000000
.........................................................................................................................................................................................................................................................................................................ACTACACTCGAATCTCAAAAATGACC.......................2611.0011000000
..........................................................................................................................................................................................................................................A-A---------------------------------ATG-CAAATGGATTTACGTGCTG.....................................................2411.0010000100
.......................................................................................................................................................................................................................................................................................................GAACTACACTCGAATCTCAG...............................2011.0010001000
.......................................................................................................................................................................................................................................................................................................GAACTACACTCGAATCTCAA...............................2011.0011000000
.......................................................................................................................................................................................................................................................................................................................................ACTTCAACTACCCCAGCAA1911.0011000000
..........................................................................................................................................................................................................................................................................................................................AAAATGACCACCTACTTCAACT..........2211.0011000000
.............................................................................................................................................................................................................................................................................................................CACTCGAATCTCAAAAATGACCACC....................2511.0011000000
..............................................................................................................................................................................................................................................................................................................ACTCGAATCTCAAAAATGACCACC....................2411.0011000000
............................................................................................................................................................................................................................................A---------------------------------ATG-CAAATGGATTTACGTG........................................................2011.0010000100
..............................................................................................................................................................................................................................................................................................................ACTCGAATCTCAAAAATGACCACCTA..................2611.0011000000
..........................................................................................................................................................................................................................................................................................................CTACACTCGAATCTCAAAAAT...........................2111.0010000010
......................................................................................................................................................................................................................................................................................................AGAACTACACTCGAATCTCA................................2011.0010000100
............................................................................................................................................................................................................................................................................................................ACACTCGAATCTCAAAAATGACCACCTAC.................2911.0011000000
..................................................................................................................................................................................................................................................................................................................GAATCTCAAAAATGACCACCTACTTCA.............2711.0011000000
droYak3
TTT---CCCAAAAAAAAAACTGTCAAAATTTTAAGTTCTTATT---T-TTTACCCCAAACGATTTCAAAATTCTGTGCTTACACAATGGTTTCTTATCATCCACGCCTCTTCGGAATACGATAGCTAAATTTCTAACATCCAATGTCCGCTTCTCTTTTTCATCAAACCAAACAACACCA------------------------------------ACAACTCCGCATCGACTCA-A---------------------------------ATG-CAAATGGATTTGCGTGCTGCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................A---------------------------------ATG-CAAATGGATTTGCGTGCTGCAGAAC...............................................2915.00500000000005
......................................................................................................................................................................................................................................................................................................AGAACTACACTCGAATCTCAAAAAT...........................2513.00302100000000
..................................................................................................................................................................................................................................................................................CAAATGGATTTGCGTGCTGCAG..................................................2213.00330000000000
..............................................................................................................................................................................................................................................................................ATG-CAAATGGATTTGCGTGCTG.....................................................2212.00201000100000
..........................................................................................................................................................................................................................................A-A---------------------------------ATG-CAAATGGATTTGCGTGCTG.....................................................2412.00201100000000
....................................................................................................................................................................................................................................................................................AATGGATTTGCGTGCTGCA...................................................1912.00200000020000
..........................................................................................................................................................................................................................................................................................................CTACACTCGAATCTCAAAAATGACCACC....................2811.00100100000000
.......................................................................................................................................................................................................................................................................................................GAACTACACTCGAATCTCAAA..............................2111.00110000000000
......................................................................................................................................................................................................................................................................................................AGAACTACACTCGAATCTCAAA..............................2211.00101000000000
...............................................................................................................................................................................................................................................................................................................................GACCACCTACTTCAACTACCCCAA...2411.00101000000000
.............................................................................................................................................................................................................................................................................................................................ATGACCACCTACTTCAACTACCCCAGC..2711.00101000000000
............................................................................................................................................................................................................................................................................................................ACACTCGAATCTCAAAAATGACCACCT...................2711.00100010000000
...................................................................................................................................................................................................................................................................................AAATGGATTTGCGTGCTGCAGA.................................................2211.00100000010000
..................................................................................................................................................................................................................................................................................CAAATGGATTTGCGTGCTGCAGAACTA.............................................2711.00100000100000
..........................................................................................................................................................................AACAACACCA------------------------------------ACAACTCCGCATCGACT.................................................................................................................2711.00100000010000
...................................................................................................................................................................................................................................................................................AAATGGATTTGCGTGCTGCA...................................................2011.00100000010000
.........................................................................................................................................................................................................................................................................................ATTTGCGTGCTGCAGAACTAC............................................2111.00100100000000
.....................................................................................................................................................................................................................................................................................ATGGATTTGCGTGCTGCAG..................................................1911.00101000000000
.........................................................................................................................................................................................................................................................................................................ACTACACTCGAATCTCAAAAATGACCACC....................2911.00101000000000
..................................................................................................................................................................................................................................................................................CAAATGGATTTGCGTGCTG.....................................................1911.00100000010000
......................................................................................................................................................................................................................................................................................................................CTCAAAAATGACCACCTAC.................1911.00101000000000
....................................................................................................................................................................................................................................................................................................................ATCTCAAAAATGACCACCTACTTCAA............2611.00101000000000
........................................................................................................................................................................................................................................................................................................................CAAAAATGACCACCTACTTCAAC...........2311.00101000000000
...................................................................................................................................................................................A------------------------------------ACAACTCCGCATCGACTCA-A---------------------------------............................................................................2111.00100000010000
.........................................................................................................................................................................................................................................................................................................ACTACACTCGAATCTCAAAAATGAC........................2511.00101000000000
........................................................................................................................................................................................................................................................................................................AACTACACTCGAATCTCAAA..............................2011.00101000000000
....................................................................................................................................................................................................................................CGACTCA-A---------------------------------ATG-CAAATGGATTTGCGT.........................................................2611.00100000010000
.............................................................................................................................................................................................................................................................................................................................ATGACCACCTACTTCAACTACCC......2311.00101000000000
...............................................................................................................................................................................................................................................................................................................CTCGAATCTCAAAAATGACCACC....................2311.00110000000000
.............................................................................................................................................................................................................................................................................................................CACTCGAATCTCAAAAATGAC........................2111.00100100000000
......................................................................................................................................................................................................................................................................................................AGAACTACACTCGAATCTCA................................2011.00100010000000
.................................................................................................................................................................................................................................................................................................................CGAATCTCAAAAATGACC.......................1811.00110000000000
..........................................................................................................................................................................................................................................................................................................CTACACTCGAATCTCAAAAATGAC........................2411.00110000000000
.............................................................................................................................................................................................................................................................................................................CACTCGAATCTCAAAAATG..........................1911.00110000000000
.................................................................................................CATCCACGCCTCTTCGGAATACGAT................................................................................................................................................................................................................................2511.00100000010000
............................................................................................................................................................................................................................................................................................................................AATGACCACCTACTTCAACTACC.......2311.00101000000000
..............................................................................................................................................................................................................................................................................ATG-CAAATGGATTTGCGTG........................................................1911.00100000010000
.....................................................................................................................................................................................................................................................................................ATGGATTTGCGTGCTGCAGAACTACACT.........................................2811.00100000010000
................................................................................................................................................................................................................................................................................................................................ACCACCTACTTCAACTACCCC.....2111.00101000000000
........................................................................................................................................................................................................................................................................................................................CAAAAATGACCACCTACTTCAACTACCCC.....2911.00100100000000
.............................................................ATTTCAAAATTCTGTGCTTACACAATGG.................................................................................................................................................................................................................................................................2811.00101000000000
.............................................................................................................................................................................................................................................................................................................................ATGACCACCTACTTCAACTACCCC.....2411.00101000000000
.........................................................................................................................................................................................................................................................................................................ACTACACTCGAATCTCAAAA.............................2011.00100100000000
droEug1
CCA-----------AAATCCTGTCAAATTTTTTCGTTTAGTTTA--G-TTTCCCCTTAAAAAATTCAAAATTCTGCGTTTAAGTAATGCATTGCTATTTCGGGAACCGTTTTCGAAACCGTTAACTAAATTTCTAATAACAAATGTTCAACCTTCTTATTCTTCCATCAAAAATGCATCA---------------------------------------------AAAAAATTCAC-------A-TTTTCCATTGG-AACTAAAT-CTCGTCG-AAAATCGATTCCCGTGCTGCAGAACAACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAASizeHit CountTotal NormTotal
No Reads
droBia1
GAA-----------AA-CCCTACGAAAATTCCTAGTTATCC-------GTCCCCCAAAAAGGCTTCAAAATTCTTCGTTTAAGTCATGGCTTTTTATTTTCTAAGCCTCGAGCAACCCACCTAGCCAAATTACTAACTTGCGAACTTCGATCTTCTTATTTTTCCACCAAAAACGCTCCA---------------------------------------------C-----------------CCCTGG-CGATCG-GCCTGAATCCGAATGG-GAAATGGATTCGCGTCACGCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAASizeHit CountTotal NormTotal
No Reads
droTak1
AGA-----------AAGTTCTACCAAAATTCCTAGTTTCCTC-------TTCCCTAAAAAAGCTTCAAAATTCTTCGTTTAAGCAATGGATTTTTACTTTCAAAGCCGCTTTTATATCCCCTAGTCAAATTACTAACAGGCAATTTCCACTCTTCTTATTCTTCCACCAAAAATCCACC-----------------------------------------------------------------TTTGG-CGAT----------------TGG-AAAATGGACTCGCGTCATGCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAASizeHit CountTotal NormTotal
No Reads
droEle1
TTT-----------AGAGATTGACCAAATTTTTGGTTTTTTTCCCCT-TTTCCCCTTAACGGCTTCAAAATTCTTCGTTTAAACCACGGCTTTTTGTTTTGGAACTCGTTTCCGAATCCGCTATGCAAATTATTAACAAACAATCTCCGCTCTTCTTATTTCTCCACCAAATATACACCAC---------------------------------CTGCTCATCCGCATCAATTTC--------CCTTGG-CGATTG-GTCTAAATCCGTTTGG-AAAATGGATTCCGGTTATGCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAASizeHit CountTotal NormTotal
No Reads
droRho1
AAATTTC----G--AAGTCCTCCTAAATTGTTTTGT------------TTCCCTCTCAACGGCTTCAAAATTCTTAGTTTAAGCAATGGCTCTCTGTTTTGGAAACCGTTTTCGAATCCGCTAACTAAATTATTAACAAAACCGCTCCGATCTTCTTATTTTTCCACCAAAAATCCACCA---------------------------------------------C-----------------CTCTGG-CGATTG-GACTAAATCCGCATAC-AAAATGGATTCCGGTGATGCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAASizeHit CountTotal NormTotal
No Reads
droFic1
CAA-----------AA--CCTTTCAAAATTTTTAGTTTTTCTTTTTT-TGGACCTTTATATCTTTCAAAATTTTTTCCCTAAGCAATGGCTTACTACTCTCTAAGCCGTTGCCGAAAGCGGTAACAAAATTACTAACATGCAATTTCCGCTTTTCTTATTCTTTCACCAAAAATCCACCTT---------------------------------CCGCCAATCTACATCAACTGC--------CTTCGG-TGACTG-GACCAAATTCGATTGG-AAAATGGATTCGCGTGATGCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAASizeHit CountTotal NormTotal
No Reads
droKik1
CAG-----------AATATATACATAAATTTATACTGCTTTTTTAGGCGTAACATTCGACAGCTTCAAAATTCTCCGTTTAAACCATGGCGCACTTTTTCGCAATACGGTTTCGTGTTCCATAGCCAAAATACTAACTAGCCACCTCTCCCATTCTTATTCTTTCACCACAAATGGACTAC---------------------------------CTGCTTTCCAACACCATCTCT--------TGCTGG-GAATCG-AACGAAATACTCTGGG-AAAATGGATCGGCGTGCTGCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAASizeHit CountTotal NormTotal
No Reads
droAna3
GAA---------------CTTTTCAAAATTTTTCGTTTCTATC---G-G-TCTTTTTAAATTCTTCAAAATTCAGCATTTAGGCCATGGCGTTCTTTTTCCTAAACCGCTTTCGAATTCAATAACAAAAATACTAAATAGCCAAAAATTCTTTTCTT-TTCACGCATCATCAC------------ACACCCCATTTTCACAATGGGTCACAATACCGCTATTTACCACCAATGTA---------CCTGC-GGAACG-GGCGAAATT-----CA-AAAATGGCT-----TCCTTCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................GACCACCTACTTCAACTACC.......2013.003210000
...............................................................................................................................................................................................................................................................................................................................GACCACCTACTTCAACTACCCCAGC..2513.003030000
............................................................................................................................................................................................................................................................................................................................AATGACCACCTACTTCAACTACCCCA....2613.003300000
..............................................................................................................................................................................................................................................................................................................................TGACCACCTACTTCAACTACCCC.....2313.003300000
............................................................................................................................................................................................................................................................................................................................AATGACCACCTACTTCAAC...........1912.002020000
.............................................................................................................................................................................................................................................................................................................................ATGACCACCTACTTCAACTACCCC.....2412.002200000
.............................................................................................................................................................................................................................................................................................................................ATGACCACCTACTTCAACTACCC......2312.002110000
...............................................................................................................................................................................................................................................................................................................................GACCACCTACTTCAACTACCCC.....2212.002110000
.............................................................................................................................................................................................................................................................................................................................ATGACCACCTACTTCAACTACCCCAGCA.2812.002200000
............................................................................................................................................................................................................................................................................................................................AATGACCACCTACTTCAACTACCCC.....2512.002110000
........................................................................................................................................................................................................................................................................................................AACTACACTCGAATCTCAAA..............................2011.001100000
................................................................................................................................................................................................................................................................................................................................ACCACCTACTTCAACTACCC......2011.001100000
....................................................................................................................................................................................................................................................................................................................ATCTCAAAAATGACCACCTACTTC..............2411.001010000
........................................................................................................................................................................................................................................................................................................AACTACACTCGAATCTCAAAA.............................2111.001100000
..................................................................................................................................................................................................................................................................................................................................CACCTACTTCAACTACCCCAGC..2211.001010000
..............................................................................................................................................................................................................................................................................................................ACTCGAATCTCAAAAATGAC........................2011.001010000
.....................................................................ATTCAGCATTTAGGCCATGGC................................................................................................................................................................................................................................................................2111.001010000
.............................................................................................................................................................................................................GTCACAATACCGCTATTTACCACC.....................................................................................................................2411.001010000
................................................................................................................................................................................................................................................................................................................................ACCACCTACTTCAACTACCCCA....2211.001100000
............................................................................................................................................................................................................................................................................................................................AATGACCACCTACTTCAA............1811.001100000
........................................................................................................................................................................................................................................................................................................................CAAAAATGACCACCTACTTCAACTACC.......2711.001010000
.......................................................................................................................................................................................................................................................................................................GAACTACACTCGAATCTCA................................1911.001000001
.......................................................................................................................................................................................................................................................................................................................TCAAAAATGACCACCTACTT...............2011.001100000
.............................................................................................................................................................................................................................................................................................................................ATGACCACCTACTTCAACTACC.......2211.001100000
.................................................................................................................................................................................................................................................................................................................CGAATCTCAAAAATGACCACC....................2111.001010000
...................................................................................................................................................................................................................................................................................................................................ACCTACTTCAACTACCCCAGCA.2211.001100000
...............................................................................................................................................................................................................................................................................................................................GACCACCTACTTCAACTACCCCA....2311.001100000
..................................................................................................................................................................................................................................................................................................................GAATCTCAAAAATGACCACCTACTTC..............2611.001100000
...............................................................................................................................................................................................................................................................................................................................GACCACCTACTTCAACTACCC......2111.001100000
.............................................................................................................................................................................................................................................................................................................................ATGACCACCTACTTCAACTACCCCAGC..2711.001100000
................................................................................................................................................................................................................................................................................................................TCGAATCTCAAAAATGACCAC.....................2111.001100000
..........................................................................................................................................................................................................................................................................................................CTACACTCGAATCTCAAAAATGACCACCT...................2911.001001000
...................................................................................................................................................................................................................................................................................................................AATCTCAAAAATGACCACCTA..................2111.001010000
..............................................................................................................................................................................................................................................................................................................................TGACCACCTACTTCAACTACC.......2111.001100000
.........................................................................................................................................................................................................................................................................................................................AAAAATGACCACCTACTTCAACTACCC......2711.001010000
.....................................................................................................................................................................................................................................................................................................................TCTCAAAAATGACCACCTACTTCAA............2511.001100000
........................................................................................................................................................................................................................................................................................................AACTACACTCGAATCTCAAAAATGACC.......................2711.001100000
.............................................................................................................................................................................................................................................................................................................................ATGACCACCTACTTCAACTACCCCA....2511.001100000
.................................................................................................................................................................................................................................................................................................................................CCACCTACTTCAACTACCCC.....2011.001100000
...................................................................................................................................................................................................................................................................................................................AATCTCAAAAATGACCACC....................1911.001010000
...............................................................................................................................................................................................................................................................................................................................GACCACCTACTTCAACTACCCCAG...2411.001010000
.............................................................................................................................................................................................................................................................................................................................ATGACCACCTACTTCAACT..........1911.001100000
...............................................................................................................................................................................................................................................................................................................CTCGAATCTCAAAAATGACCACC....................2311.001100000
....................................................................................................................................................................................................................................................................................................................................CCTACTTCAACTACCCCAGCA.2111.001100000
..........................................................................................................................................................................................................................................................................................................................AAAATGACCACCTACTTCAACT..........2211.001100000
..........................................................................................................................................................................................................................................................................................................CTACACTCGAATCTCAAAAAT...........................2111.001001000
........................................................................................................................................................................................................................................................................................................................CAAAAATGACCACCTACTT...............1911.001010000
..........................................................................................................................................................................................................................................................................................................CTACACTCGAATCTCAAAAA............................2011.001100000
.............................................................................................................................................................................................................................................................................................................................ATGACCACCTACTTCAACTACCCG.....2411.001100000
......................................................................................................................................................................................................................................................................................................AGAACTACACTCGAATCTCAAAAAT...........................2511.001010000
................................................................................................................................................................................................................................................................................................................................ACCACCTACTTCAACTACCCC.....2111.001100000
.................................................................................................................................................................................................................................................................................................................CGAATCTCAAAAATGACCACCTACTT...............2611.001010000
............................................................................................................................................................................................................................................................................................................................AATGACCACCTACTTCAACTACCCCAGC..2811.001100000
............................................................................................................................................................................................................................................................................................................................AATGACCACCTACTTCAACTACCC......2411.001100000
............................................................................................................................................................................................................................................................................................................ACACTCGAATCTCAAAAAT...........................1911.001001000
......................................................................................................................................................................................................................................................................................................................................TACTTCAACTACCCCAGCA.1911.001100000
..............................................................................................................................................................................................................................................................................................................ACTCGAATCTCAAAAATGACCACCTA..................2611.001010000
.........................................................................................................................................................................................................................................................................................................ACTACACTCGAATCTCAAAAATGACC.......................2611.001010000
.........................................................................................................................................................................................................................................................................................................ACTACACTCGAATCTCAAAAA............................2111.001000001
......................................................................................................................................................................................................................................................................................................................CTCAAAAATGACCACCTACTT...............2111.001010000
droBip1
AGA-----------AC---TGCTCAAAATTTTTGTTTTCTTTC---G-GTCCTTTTCAAAATTATCAAAATTCAGCATTTAGGCCATGGCGTTCTTTTTCCTAAACCGTTTCCAAATTCGATAACAAATATACTAAAGAGCCAATTATTCCTTTCTT-TCCATTCATCTTCAC------------ACACCCTACTGCTACAATGGGGCACGATACCGCTATTTACCACCAATTCA-C--------CTGC-GAAACG-GACGAAATT-----CC-AAAATGGCT-----TCCTTCAGAACTACACTCGAATCTCAAAAATGACCACCTACTTCAACTACCCCAGCAASizeHit CountTotal NormTotal
No Reads
dp5
A----------------------------------------------------------AGCCGTCAAAATTCTTCGTTTAGGACTTTCTTTGGTGTCCTGCAAGCCATTGCAGAACCCAGTTTATCGCCTACTAACATGTCACGAACACTCTCTTTCTTCTTGCCACA--ACTGCGCGA---------------------------------------------ATCCGTCGCA-C--------CCAT-CAATTGGA-------------AC-AAAATGGACTCGCATCTTGCAGAACTACACTCGAATCTCAAACATGACCACCTACTTCAACTACCCCAGCAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................AACATGACCACCTACTTCAACTACCCC.....2718.0080305000000
..........................................................................................................................................................................................................................................................................................................................AACATGACCACCTACTTCAACT..........2214.0040202000000
..........................................................................................................................................................................................................................................................................................................................AACATGACCACCTACTTCAACTACCC......2613.0030102000000
..............................................................................................................................................................................................................................................................................................................................TGACCACCTACTTCAACTACCCC.....2313.0030201000000
.............................................................................................................................................................................................................................................................................................................................ATGACCACCTACTTCAACTACCCC.....2412.0020101000000
...........................................................................................................................................................................................................................................................................................................TACACTCGAATCTCAAACATGACCACC....................2712.0020002000000
............................................................................................................................................................................................................................................................................................................................CATGACCACCTACTTCAACTACCCC.....2512.0020002000000
...................................................................................................................................................................................................................................................................................AAATGGACTCGCATCTTGCAG..................................................2112.0020100100000
.......................................................................................................................................................................................................................................................................................................GAACTACACTCGAATCTCAAA..............................2112.0020200000000
..................................................................................................................................................................................................................................................................................................................GAATCTCAAACATGACCACCTAC.................2312.0020002000000
...............................................................................................................................................................................................................................................................................................................CTCGAATCTCAAACATGACCACCTACT................2712.0020101000000
.......................................................................................................................................................................................................................................................................................................................TCAAACATGACCACCTACTTCAAC...........2412.0020200000000
...........................................................................................................................................................................................................................................................................................................................ACATGACCACCTACTTCAAC...........2012.0020101000000
............................................................................................................................................................................................................................................................................................................................CATGACCACCTACTTCAACTACC.......2312.0020002000000
......................................................................................................................................................................................................................................................................................................................CTCAAACATGACCACCTACTTC..............2211.0010100000000
................................................................................................................................................................................................................................................................................................................TCGAATCTCAAACATGACCACCTACT................2611.0010100000000
....................................................................................................................................................................................................................................................................................................................................CCTACTTCAACTACCCCAGCA.2111.0010100000000
................................................................................................................................................................................................................................................................................................................TCGAATCTCAAACATGACCACCTA..................2411.0010100000000
..................................................................................................................................................................................................................................................................................................................GAATCTCAAACATGACCACC....................2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................ATGACCACCTACTTCAACTA.........2011.0010001000000
...............................................................................................................................................................................................................................................................................................................................GACCACCTACTTCAACTACCC......2111.0010100000000
.............................................................................TTTAGGACTTTCTTTGGTGTC........................................................................................................................................................................................................................................................2111.0010000001000
.............................................................................................................................................................................................................................................................................................................................ATGACCACCTACTTCAACTACCCCAGCA.2811.0010100000000
...............................................................................................................................................................................................................................................................................................................CTCGAATCTCAAACATGACCACCTA..................2511.0010100000000
.............................................................................................................................................................................................................................................................................................................................ATGACCACCTACTTCAACT..........1911.0010100000000
..................................................................................................................................................................................................................................................................................AAAATGGACTCGCATCTTG.....................................................1911.0010100000000
.........................................................................................................................................................................................................................................................................................................ACTACACTCGAATCTCAAACAT...........................2211.0010100000000
..................................................................................................................................................................................................................................................................................................................GAATCTCAAACATGACCACCTA..................2211.0010100000000
.........................................................................................................................................................................................................................................................................................................ACTACACTCGAATCTCAAACA............................2111.0010100000000
.................................................................................................................................................................................................................................................................................................................CGAATCTCAAACATGACCACCTA..................2311.0010100000000
.......................................................................................................................................................................................................................................................................................................................TCAAACATGACCACCTACTTC..............2111.0010100000000
......................................................................................................................................................................................................................................................................................................................CTCAAACATGACCACCTACTT...............2111.0010100000000
........................................................................................................................................................................................................................................................................................................................CAAACATGACCACCTACTTCAACT..........2411.0010100000000
..........................................................................................................................................................................................................................................................................................................CTACACTCGAATCTCAAACATGACCACC....................2811.0010001000000
............................................................................................................................................................................................................................................................................................................ACACTCGAATCTCAAACATGACC.......................2311.0010100000000
...........................................................................................................................................................................................................................................................................................................................ACATGACCACCTACTTCAACTA.........2211.0010100000000
...........................................................................................................................................................................................................................................................................................................TACACTCGAATCTCAAAC.............................1811.0010100000000
..............................................................................................................................................................................................................................................................................................................................TGACCACCTACTTCAACTACC.......2111.0010001000000
.......................................................................................................................................................................................................................................................................................................................TCAAACATGACCACCTACTTCA.............2211.0010100000000
.........................................................................................................................................................................................................................................................................................................................AAACATGACCACCTACTTCAA............2111.0010100000000
........................................................................................................................................................................................................................................................................................................AACTACACTCGAATCTCAAACATGACCA......................2811.0010100000000
................................................................................................................................................................................................................................................................................................................TCGAATCTCAAACATGACCACCTACTTC..............2811.0010100000000
...............................................................................................................................................................................................................................................................................................................................GACCACCTACTTCAACTACCCCAGCA.2611.0010100000000
............................................................................................................................................................................................................................................................................................................................CATGACCACCTACTTCAACTACCCCAGC..2811.0010010000000
..........................................................................................................................................................................................................................................................................................................CTACACTCGAATCTCAAACATGAC........................2411.0010100000000
..............................................................................................................................................................................................................................................................................................................ACTCGAATCTCAAACATGACCACC....................2411.0010100000000
...................................................................................................................................................................................................................................................................................................................AATCTCAAACATGACCACCTACT................2311.0010100000000
................................................................................................................................................................................................................................................................................................................TCGAATCTCAAACATGACCACC....................2211.0010001000000
............................................................................................................................................................................................................................................................................................................ACACTCGAATCTCAAACATGACCACC....................2611.0010001000000
......................................................................................................................................................................................................................................................................................................AGAACTACACTCGAATCTCAAACA............................2411.0010100000000
.................................................................................................................................................................................................................................................................................................................................CCACCTACTTCAACTACCCCA....2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................ACATGACCACCTACTTCAACTACCCCAGC..2911.0010001000000
.........................................................................................................................................................................................................................................................................................................ACTACACTCGAATCTCAAACATGACCAC.....................2811.0010001000000
.......................................................................................................................................................................................................................................................................................................GAACTACACTCGAATCTCAAACATGAC........................2711.0010100000000
.......................................................................................................................................................................................................................................................................................................................TCAAACATGACCACCTACTT...............2011.0010001000000
.................................................................................................................................................................................................................................................................................................................................CCACCTACTTCAACTACCC......1911.0010100000000
...............................................................................................................................................................................................................................................................................................................CTCGAATCTCAAACATGACCACC....................2311.0010100000000
...............................................................................................................................................................................................................................................................................................................CTCGAATCTCAAACATGACC.......................2011.0010001000000
................................................................................................................................................................................................................................................................................................................TCGAATCTCAAACATGACCACCT...................2311.0010100000000
....................................................................................................................................................................................................................................................................................................................ATCTCAAACATGACCACCTACTTCA.............2511.0010100000000
............................................................................................................................................................................................................................................................................................................ACACTCGAATCTCAAACATGACCACCTA..................2811.0010100000000
......................................................................................................................................................................................................................................................................................................................CTCAAACATGACCACCTACTTCAAC...........2511.0010100000000
...............................................................................................................................................................................................................................................................................................................CTCGAATCTCAAACATGACCACCT...................2411.0010100000000
.........................................................................................................................................................................................................................................................................................................................AAACATGACCACCTACTTCA.............2011.0010000010000
droPer2
A----------------------------------------------------------AGCCGTCAAAATTCTTCGTTTAGGACTTTCTTTGGTGTCCTGCAAGCCATTGCAGAACCCAGTTTATCGCCTACTAACATGTCACGAACACTCTCTTTCTTCTTGCCACA--ACTGCGCGA---------------------------------------------ATCCGTCGCA-A--------CCAT-CAATTGGA-------------AA-AAAATGGACTCGCATCTTGCAGAACTACACTCGAATCTCAAACATGACCACCTACTTCAACTACCCCAGCAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................GTCGCA-A--------CCAT-CAATTGGA-------------AA-AA......................................................................2313.003300000
.......................................................................................................................................................................................................................................................................................................GAACTACACTCGAATCTCAAACATGAC........................2712.002200000
...............................................................................................................................................................................................................................................................................................................CTCGAATCTCAAACATGACCACC....................2312.002020000
..............................................................................................................................................................................................................................................................................................................................TGACCACCTACTTCAACTACCCCAGC..2612.002020000
.................................................................................................................................................................................................................................................................................................................CGAATCTCAAACATGACCACCTACT................2512.002020000
.........................................................................................................................................................................................................................................................................................................................AAACATGACCACCTACTTCAACT..........2311.001010000
.....................................................................ATTCTTCGTTTAGGACTTTCTTTGGTGT.........................................................................................................................................................................................................................................................2811.001100000
...............................................................................................................................................................................................................................................................................................................................GACCACCTACTTCAACTACCCCAG...2411.001100000
.......................................................................................................................................................................................................................................................................................................GAACTACACTCGAATCTCA................................1911.001010000
...............................................................................................................................................................................................................................................................................................................CTCGAATCTCAAACATGACCACCT...................2411.001100000
..............................................................................................................................................................................................................................................................................................................................TGACCACCTACTTCAACTA.........1911.001010000
.......................................................................................................................................................................................................................................................................................................................TCAAACATGACCACCTACTTCA.............2211.001010000
.......................................................................................................................................................................................................................................................................................................GAACTACACTCGAATCTCAAACATG..........................2511.001010000
............................................................................................................................................................................................................................................................................................................ACACTCGAATCTCAAACATGACCACCTA..................2811.001010000
..............................................................................................................................................................................................................................................................................................................................TGACCACCTACTTCAACTACC.......2111.001010000
..........................................................................................................................................................................................................................................................................................................................AACATGACCACCTACTTCAACTACCCC.....2711.001010000
................................................................................................................................................................................................................................................................................................................TCGAATCTCAAACATGACCACCT...................2311.001010000
..........................................................................................................................................................................................................................................................................................................................AACATGACCACCTACTTCA.............1911.001010000
................................................................................................................................................................................................................................................................................................................TCGAATCTCAAACATGACCACC....................2211.001010000
..........................................................................................................................................................................................................................................................................................................................AACATGACCACCTACTTCAACT..........2211.001010000
.............................................................................................................................................................................................................................................................................................................................ATGACCACCTACTTCAACTACCC......2311.001010000
.................................................................................................................................................................................................................................................................A-------------AA-AAAATGGACTCGCATCTTGCAG..................................................2511.001010000
............................................................................................................................................................................................................................................................................................................................CATGACCACCTACTTCAACTACCCC.....2511.001010000
...................................................................................................................................................................................................................................................................................................................AATCTCAAACATGACCACC....................1911.001010000
.......................................................................................................................................................................................................................................................................................................GAACTACACTCGAATCTCAAACA............................2311.001010000
........................................................................................................................................................................................................................................................................................................................CAAACATGACCACCTACTTCAACT..........2411.001010000
..........................................................................................................................................................................................................................................................................................................CTACACTCGAATCTCAAACATGACCACCT...................2911.001100000
........................................................................................................................................................................................................................................................................................................AACTACACTCGAATCTCAAAC.............................2111.001010000
......................................................................................................................................................................................................................................................................................................................................TACTTCAACTACCCCAGCA.1911.001010000
.......................................................................................................................................................................................................................................................................................................GAACTACACTCGAATCTCAAAC.............................2211.001010000
.................................................................................................................................................................................................................................................................................................................CGAATCTCAAACATGACCACC....................2111.001010000
..................................................................................................................................................................................................................................................................................................................GAATCTCAAACATGACCACCTACTTCA.............2711.001010000
......................................................................................................................................................................................................................................................................................................AGAACTACACTCGAATCTCAAACATGA.........................2711.001100000
....................................................................................................................................................................................................................................................................................................................ATCTCAAACATGACCACCTACTTCAACT..........2811.001010000
........................................................................................................................................................................................................................................................................................................................CAAACATGACCACCTACTTCA.............2111.001010000
..............................................................................................................................................................................................................................................................................................................................TGACCACCTACTTCAACTACCCC.....2311.001010000
.................................................................................................................................................................................................................................ATCCGTCGCA-A--------CCAT-CAATTG..........................................................................................2111.001100000
..............................................................................................................................................................................................................................................................................................................ACTCGAATCTCAAACATGACC.......................2111.001010000
................................................................................................................................................................................................................................................................GA-------------AA-AAAATGGACTCGCATCTTG.....................................................2311.001010000
droWil2
TTT-------------------TCA-AATTTGTCTCTTGTAAT---A-A-CCAAGGAAGGTTCTTCAAAATTCTTTGTGCTAAACACATTATGATTTCGTTTAGAGTATTTACAAATTCGCAACGCCGTTTAATAACTTGTAATTTTCATTCTGGTTCCTCTTTTC---AAAATCAACAACCACA-------ACTTTCA--------------------------CAACAAACAA-AACAATT-TCTGG-CG-------------------TC-AAAATGCTGCCATCCTCTGCAGAACTACACTCGAATCTCAAACATGACTACCTACTTCAACTACCCCAGCAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................CTCGAATCTCAAACATGACTACC....................2316.00624000
...............................................................................................................................................................................................................................................................................................................CTCGAATCTCAAACATGACTACCT...................2415.00550000
...............................................................................................................................................................................................................................................................................................................CTCGAATCTCAAACATGACT.......................2014.00440000
.................................................................................................................................................................................................................................................................................................................CGAATCTCAAACATGACTACC....................2113.00303000
...................................................................................................................................................................................................................................................................................................................AATCTCAAACATGACTACC....................1912.00211000
.......................................................................................................................................................................................................................................................................................................GAACTACACTCGAATCTCA................................1912.00200020
..............................................................................................................................................................................................................................................................................................................................TGACTACCTACTTCAACTACCC......2212.00202000
..............................................................................................................................................................................................................................................................................................................ACTCGAATCTCAAACATGACTACCT...................2511.00110000
..........................................................................................................................................................................................................................................................................................................CTACACTCGAATCTCAAACA............................2011.00101000
................................................................................................................................................................................................................................................................................................................TCGAATCTCAAACATGACTACC....................2211.00101000
..........................................................................................................................................................................................................................................................................................................................AACATGACTACCTACTTCAACTACCCCA....2811.00101000
.........................................................................................................................................................................................................................................................................................................ACTACACTCGAATCTCAAACATGACTACC....................2911.00110000
...................................................................................................................................................................................................................................................................................................................AATCTCAAACATGACTACCTA..................2111.00101000
........................................................................................................................................................................................................................................................................................................AACTACACTCGAATCTCA................................1811.00100010
..........................................................................................................................................................................................................................................................................................................CTACACTCGAATCTCAAACATGACTACCT...................2911.00110000
.................................................................................................................................................................................................................................................................................................................CGAATCTCAAACATGACTACCTACTTC..............2711.00101000
...............................................................................................................................................................................................................................................................................................................CTCGAATCTCAAACATGACTACCTACT................2711.00101000
...............................................................................................................................................................................................................................................................................................................CTCGAATCTCAAACATGACTACCTA..................2511.00101000
....................................................................................................................................................................................................................................................................................................................ATCTCAAACATGACTACCTACTTCA.............2511.00101000
................................................................................................................................................................................ACAACCACA-------ACTTTCA--------------------------CAACAAACAA-AAC...........................................................................................................2911.00101000
.................................................................................................................................................................................................................................................................................................................CGAATCTCAAACATGACTACCT...................2211.00110000
.....................................................................................................................................................................................................................................................................................................................TCTCAAACATGACTACCTACTTCA.............2411.00110000
..............................................................................................................................................................................................................................................................................................................ACTCGAATCTCAAACATGACC.......................2111.00110000
droVir3
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGAATTTTACGCGAATCTCAAAGATGACCACCTACTTCAACTATCCCAGCAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................ATTTTACGCGAATCTCAAAGAT...........................2218.008001100000000010011100010000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................ACGCGAATCTCAAAGATGACC.......................2118.008001000000000000002100210000000000000000000000000000000000000100
.........................................................................................................................................................................................................................................................................................................ATTTTACGCGAATCTCAAAGA............................2116.006002000000000001011000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................TTTTACGCGAATCTCAAAGATGACC.......................2515.005003000000000000000110000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................GCGAATCTCAAAGATGACC.......................1915.005001000000000000001210000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TTACGCGAATCTCAAAGATGACCACC....................2614.004001000000000000001020000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................GAATTTTACGCGAATCTCAAAGAT...........................2414.004003000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TTTACGCGAATCTCAAAGATGACCACC....................2713.003002000000000000000100000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TGACCACCTACTTCAACTAT........2013.003001000000000000100000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................................................................................ACGCGAATCTCAAAGATGACCA......................2213.003000000000000000001000200000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TTTACGCGAATCTCAAAGATGACC.......................2412.002000000000000000000010100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................CGCGAATCTCAAAGATGACCAC.....................2212.002000000000000000000020000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TTTACGCGAATCTCAAAGA............................1912.002001000000000000000100000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................AAAGATGACCACCTACTTCAACT..........2312.002000000000000000100000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TCTCAAAGATGACCACCTACTTCAACT..........2712.002000000000000000001010000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................TACTTCAACTATCCCAGCAA2012.002001000000000000010000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................ACGCGAATCTCAAAGATGACCACC....................2412.002001000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TTACGCGAATCTCAAAGATGACCA......................2412.002000000000000000001010000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................GACCACCTACTTCAACTATCCCAGCAA2712.002001000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................AAAGATGACCACCTACTTCA.............2012.002002000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TTACGCGAATCTCAAAGATGACCACCTA..................2812.002000000000000000002000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TTACGCGAATCTCAAAGAT...........................1912.002001000000000000000000000000000000001000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................CTCAAAGATGACCACCTACTTCAAC...........2512.002001000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................CCTACTTCAACTATCCCAGCAA2212.002000000000000000001000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................CAAAGATGACCACCTACTTCAACT..........2412.002000100000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................ACCACCTACTTCAACTATCCC.....2112.002002000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................AATTTTACGCGAATCTCAAAGAT...........................2312.002000000000000000000200000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TGACCACCTACTTCAACTATCCCAGC..2611.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................GATGACCACCTACTTCAACC..........2011.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TCAAAGATGACCACCTACTTCAACTA.........2611.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................AATCTCAAAGATGACCACCTACTTCA.............2611.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TTACGCGAATCTCAAAGATGACCACCT...................2711.001000000000000000000010000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................CCACCTACTTCAACTATCCCAGC..2311.001000000000000000000100000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TCAAAGATGACCACCTACTTCAACT..........2511.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................ATGACCACCTACTTCAACTATCCCAGC..2711.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TACGCGAATCTCAAAGATG..........................1911.001000000000000000000100000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TTACGCGAATCTCAAAGATGACC.......................2311.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TCTCAAAGATGACCACCTACTTCAACTA.........2811.001000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TCTCAAAGATGACCACCTACTTCAAC...........2611.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................TACTTCAACTATCCCAGCA.1911.001000000000000000000100000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................ATGACCACCTACTTCAACTATCC......2311.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................CTACTTCAACTATCCCAGC..1911.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................AATTTTACGCGAATCTCAAAGATGACCA......................2811.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................AATCTCAAAGATGACCACC....................1911.001000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................GCGAATCTCAAAGATGACCA......................2011.001000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................ATTTTACGCGAATCTCAAAGATGACC.......................2611.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................ATCTCAAAGATGACCACCTA..................2011.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TACGCGAATCTCAAAGATGACCACC....................2511.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TGACCACCTACTTCAACTATCCCA....2411.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................AAAGATGACCACCTACTTCAACTA.........2411.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TTACGCGAATCTCAAAGATGAC........................2211.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................GCGAATCTCAAAGATGACCACCT...................2311.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................GCGAATCTCAAAGATGAC........................1811.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TTTTACGCGAATCTCAAAGAT...........................2111.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TCAAAGATGACCACCTACTTCA.............2211.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................CGAATCTCAAAGATGACCACCTACTTCA.............2811.001000000000000000000100000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................GAATTTTACGCGAATCTCAAA..............................2111.001000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................CCTACTTCAACTATCCCAGCA.2111.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TACGCGAATCTCAAAGATGACCACCT...................2611.001000000000000000000100000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................ACGCGAATCTCAAAGATGACCACCTA..................2611.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TCTCAAAGATGACCACCTACTTC..............2311.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................CAAAGATGACCACCTACTTC..............2011.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TACGCGAATCTCAAAGATGACC.......................2211.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................ATGACCACCTACTTCAACTATCCCAGCAA2911.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TTACGCGAATCTCAAAGATGACCAC.....................2511.001000000000000000010000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................CGAATCTCAAAGATGACCACCTACT................2511.001000000000000000000010000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TCAAAGATGACCACCTACT................1911.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................GCGAATCTCAAAGATGACCACCTACTTCA.............2911.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................ATCTCAAAGATGACCACC....................1811.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................CGAATCTCAAAGATGACCACCT...................2211.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................GAATTTTACGCGAATCTCA................................1911.001000000000000000000100000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................ATTTTACGCGAATCTCAAAG.............................2011.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TTTTACGCGAATCTCAAAGATGACCACC....................2811.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................AATCTCAAAGATGACCACCTACTTCAACT..........2911.001000000000000000000100000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................AATTTTACGCGAATCTCAAA..............................2011.001000000000000000000010000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TCTCAAAGATGACCACCTACTTCAA............2511.001000000000000001000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................AATTTTACGCGAATCTCAAAGA............................2211.001000000000000000000100000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TTTACGCGAATCTCAAAGAC...........................2011.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TACGCGAATCTCAAAGATGACCA......................2311.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TTTTACGCGAATCTCAAAGA............................2011.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................CGAATCTCAAAGATGACCACC....................2111.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................AGATGACCACCTACTTCAACT..........2111.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................ACCTACTTCAACTATCCCAGCAA2311.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................AAAGATGACCACCTACTTCAA............2111.001000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TTTACGCGAATCTCAAAGATGACCAC.....................2611.001000000000000001000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................CTCAAAGATGACCACCTACTTCAACTA.........2711.001000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................CACCTACTTCAACTATCCCAGC..2211.001000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................................................................................................................................TACGCGAATCTCAAAGATGACCACCTACT................2911.001000000000000000000100000000000000000000000000000000000000000000
droMoj3
CGC-----------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCA-A---------------------------------ACTCAAAATGGATC-----ATTTCAGAACTTTACGCAAGTATCAAAGATGACCACCTACTTCAACTATCCCAGCAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................................AGTATCAAAGATGACCACCT...................2012.002200000
...............................................................................................................................................................................................................................................................................................................................GACCACCTACTTCAACTATCCC.....2212.002200000
.............................................................................................................................................................................................................................................................................................................TACGCAAGTATCAAAGATGACC.......................2211.001000010
............................................................................................................................................................................................................................................................................................................TTACGCAAGTATCAAAGATGACCACCT...................2711.001100000
.........................................................................................................................................................................................................................................................................................................................AAAGATGACCACCTACTTCAACT..........2311.001100000
............................................................................................................................................................................................................................................................................................................TTACGCAAGTATCAAAGATGACCACC....................2611.001000001
.......................................................................................................................................................................................................................................................................................................GAACTTTACGCAAGTATCAAAGAT...........................2411.001100000
.............................................................................................................................................................................................................................................................................................................TACGCAAGTATCAAAGATGACCACC....................2511.001100000
................................................................................................................................................................................................................................................................................................................................ACCACCTACTTCAACTATCCC.....2111.001100000
.........................................................................................................................................................................................................................................................................................................................AAAGATGACCACCTACTTCAAC...........2211.001100000
droGri2
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAATTACACGCGAATCTCAAAGATGACCACCTACTTCAACTATCCCAGCAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
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Generated: 05/18/2015 at 05:13 PM