ID:

dsi_2774

 Coordinate:

3r:10647051-10647200 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GGGCAGAGATCCACCTGCACAATGTTCAGCCGGTCCAGTTGGAGATGATTGTAAGTATTGCTAATGTTATTCAACATCTTGATGAGTCAGTCGTATTATGTTGGGGGGCTTCAACCCAAGTTTTGATTTCACCATATTGTGTGGGAGACAAGACTTGGTTATGTGAAATATTTCAGAGTTGCCAAGTCTGAGTCAGTAGGAGCATATATTGTATATTTATATATGTATGCTAGGAATAGGAACTATATAG
**************************************************.....(((((.....(((.((((((((....((((.....))))...)))))))).)))((((..((((((((((.((((.(((((...))))))))))))))))))).....))))....((((((.((...)).)))))).)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 M024
male body		 GSM343915
embryo
 SRR618934
dsim w501 ovaries
...............TGCACAATGTTCAGCCGGTCCAGTTGGAGA............................................................................................................................................................................................................. 30 0 1 3.00 3 3 0 0 0 0 0 0 0
.................CACAATGTTCAGCCGGTC....................................................................................................................................................................................................................... 18 0 1 2.00 2 0 2 0 0 0 0 0 0
..................ACAATGTTCAGCCGGTCCAGTTGGAG.............................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0
..................ACAATGTTCAGCCGGTCCAGTTGGAGA............................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0
........................TTCAGCCGGTCCAGTTGGAGATGATT........................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0
.......................GTTCAGCCGGTCCAGTTGGAGAC............................................................................................................................................................................................................ 23 1 1 1.00 1 0 0 0 0 0 1 0 0
...CTAGGATCCACCTGCACAATGTTC............................................................................................................................................................................................................................... 24 3 1 1.00 1 0 0 0 1 0 0 0 0
........................................GGAGAGCATTGTAATTATTGCT............................................................................................................................................................................................ 22 3 2 0.50 1 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................TTTGAGTCAATAGGAGGAT............................................. 19 3 16 0.31 5 1 0 0 0 4 0 0 0
.......................................................................................................................................ATTGTGTGGGAGGCAGGACTC.............................................................................................. 21 3 4 0.25 1 0 0 0 0 0 0 1 0
.................................................................GTTATTCAAAGTCGTGATGA..................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 1 0 0
...............................................................................................................................................AGAGACAAGGCTTGGTTGT........................................................................................ 19 3 14 0.14 2 0 0 0 0 0 0 0 2
.........................................................................................................................................................................................................................TACATAGGTATGCTAGG................ 17 2 17 0.06 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

CCCGTCTCTAGGTGGACGTGTTACAAGTCGGCCAGGTCAACCTCTACTAACATTCATAACGATTACAATAAGTTGTAGAACTACTCAGTCAGCATAATACAACCCCCCGAAGTTGGGTTCAAAACTAAAGTGGTATAACACACCCTCTGTTCTGAACCAATACACTTTATAAAGTCTCAACGGTTCAGACTCAGTCATCCTCGTATATAACATATAAATATATACATACGATCCTTATCCTTGATATATC
**************************************************.....(((((.....(((.((((((((....((((.....))))...)))))))).)))((((..((((((((((.((((.(((((...))))))))))))))))))).....))))....((((((.((...)).)))))).)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M024
male body
........................................................................................................................................ACCACGGCCTCTGTTCTGAAC............................................................................................. 21 3 1 1.00 1 1 0
........................................................................................................................................................................................TCAGACTCGGTCGTCCTCG............................................... 19 2 4 0.50 2 0 2
....................TTACGAGTCGGGCAGATC.................................................................................................................................................................................................................... 18 3 20 0.05 1 1 0

Generated: 04/24/2015 at 10:46 AM