ID:

dsi_27736

 Coordinate:

3l:8104574-8104634 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-6.2 -5.8 -5.8

Flybase annnotation

exon [3l_8103231_8104573_-]; CDS [3l_8103231_8104573_-]; CDS [3l_8104635_8104875_-]; exon [3l_8104635_8104875_-]; intron [3l_8104574_8104634_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------##################################################
TTTGATATATTCCTTTGGGGAGGAGGACCGTACCCTAAAGGCCTCGCAGAGTCAGTGAACCATCAGCCTTGAATGGTGCAAACTCATAACCCTGTTTTTCATTCTTCTCAGGCACCTTGACTTTCGTGATTGGCTTGTTCCTGACCTATATCGGTCTGATT
**************************************************...(((..(((((((....)).)))))....)))...........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M023
head
 O002
Head
 SRR618934
dsim w501 ovaries
 M024
male body		 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
..........................................................................................................................GTCGTGATCGGGTTGTTCCT................... 20 3 1 6.00 6 6 0 0 0 0 0 0 0 0
...........................................................................................................................TCGTGATCGGGTTGTTCCTCA................. 21 3 2 3.00 6 6 0 0 0 0 0 0 0 0
........................................................................ATGGTGCAAACTCATAACCCT.................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0
.......................AGGACCGTACCCTAAAGGCCT..................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...............................................................................................TTTTCATTCTTCTCAGGCAC.............................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.TTGATATATTCCTTTGGGGAG........................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................................CTCGCAGAGTCAGTGAACCATC................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................TTTCGTGATTGGCTTGTTCCT................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................TCGTGATCGGGTTGTTCCT................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................CTTGACTTTCGTGATTGGCTT......................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................TGGCTTGTTCCTGACCTATATCG........ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................TCGTGATCGGGTTGTTCCTC.................. 20 3 5 0.80 4 4 0 0 0 0 0 0 0 0
...........................................................................................................TCAGGTACCTTGACTCTC.................................... 18 2 4 0.75 3 1 0 0 0 0 0 1 1 0
............................................CGCAGACTCAGTGAA...................................................................................................... 15 1 5 0.60 3 3 0 0 0 0 0 0 0 0
.................................................................................................................ACCTGGACTTTCTTGATTG............................. 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0
............................................................................................................................CGTGATCGGGTTGTTCCT................... 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................GTCGTGATCGGGTTGTTCC.................... 19 3 6 0.33 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................TCGTGATCGGGTTGTTCCTA.................. 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0
.......................TGGACCGTACCCTAAAC......................................................................................................................... 17 2 5 0.20 1 0 0 0 0 0 0 1 0 0
..................................................GTCGCTGAACCATCAGGCT............................................................................................ 19 3 13 0.15 2 0 1 0 0 0 0 0 0 1
......................GAAGACCGTACCGTAAA.......................................................................................................................... 17 2 7 0.14 1 1 0 0 0 0 0 0 0 0
.................................................................................................................ACCTGGACTTTCTTGATT.............................. 18 2 7 0.14 1 0 0 0 0 0 0 1 0 0
............................................................................................................................CGTGATCGGGTTGTTCCTC.................. 19 3 10 0.10 1 1 0 0 0 0 0 0 0 0
.......................................................GGAACCATCTGCCTTGA......................................................................................... 17 2 10 0.10 1 0 0 0 0 0 0 1 0 0
.................................................................................................TTCACTGTTCTAAGGCACC............................................. 19 3 11 0.09 1 0 0 0 1 0 0 0 0 0
.......TATTCGGTTGGGGAGGA......................................................................................................................................... 17 2 13 0.08 1 0 0 0 0 0 0 0 1 0
.............................................................................................................................GTGATCGGGTTGTTCCT................... 17 2 14 0.07 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

AAACTATATAAGGAAACCCCTCCTCCTGGCATGGGATTTCCGGAGCGTCTCAGTCACTTGGTAGTCGGAACTTACCACGTTTGAGTATTGGGACAAAAAGTAAGAAGAGTCCGTGGAACTGAAAGCACTAACCGAACAAGGACTGGATATAGCCAGACTAA
**************************************************...(((..(((((((....)).)))))....)))...........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
 M023
head
 M025
embryo
..........................................................................................................................CAGCACTAGCCCAACAAGGA................... 20 3 1 3.00 3 3 0 0 0 0
......................................TCCGGAGCGTCTCAGTCACTT...................................................................................................... 21 0 1 3.00 3 0 2 0 1 0
..........................................................................................................................AAGCACTAGCCCAACAAGGAG.................. 21 3 1 2.00 2 2 0 0 0 0
................................GGGCTTCCCGGAACGTCTCAGTCAC........................................................................................................ 25 3 1 1.00 1 1 0 0 0 0
...................................................................................................................................CCGAACAAGGACTGGATATAG......... 21 0 1 1.00 1 0 0 1 0 0
.........................................................................................................................ACAGCACTAGCCCAACAAGGA................... 21 3 1 1.00 1 1 0 0 0 0
....................................TGCCCGGAACGTCTCAGTCAC........................................................................................................ 21 3 1 1.00 1 1 0 0 0 0
...................................................AGTCACTTGGTAGTCGGAACTTA....................................................................................... 23 0 1 1.00 1 0 0 0 0 1
..........................................................................................................................AAGCACTAGCCCAACAAGGA................... 20 2 1 1.00 1 1 0 0 0 0
...........................................................................................................................AGCACTAGCCCAACAAGGA................... 19 2 1 1.00 1 1 0 0 0 0
..........................................................................................................................CAGCACTAGCCCAACAAGG.................... 19 3 6 0.50 3 3 0 0 0 0
...........................................................................................................................AGCACTAGCCCAACAAGGAG.................. 20 3 5 0.40 2 2 0 0 0 0
...........................................................................................................AGTCCGTGGCACTGAGAGAA.................................. 20 3 3 0.33 1 0 0 1 0 0
........................................CGGAACGTCTCAGTCACC....................................................................................................... 18 2 4 0.25 1 1 0 0 0 0
................................................................................................AAAGTCAGAAGAGTCAGTG.............................................. 19 2 4 0.25 1 0 1 0 0 0
...........................................................................................................................................GGACTGGAGATTGCCAG..... 17 2 5 0.20 1 0 0 1 0 0
...............................................................................................................................CTAACCGAAGAACGACTG................ 18 2 7 0.14 1 0 0 0 1 0
....................................................................................................TAAGAAGAGTCAGTGCAA........................................... 18 2 8 0.13 1 0 1 0 0 0
...........................................................................................................AGGCCGTGGAACTGAGA..................................... 17 2 11 0.09 1 0 0 1 0 0
........................................................CTTGGTAGTGGGAAAT......................................................................................... 16 2 20 0.05 1 0 0 1 0 0

Generated: 04/24/2015 at 10:40 AM