dsi_2773

CATGTCCAATTTCTTGTTTAATTCTGGAAAAACATGAAAAGTTAGTGAGTTTCAGTGGGATTTACGACCATTTATAATTCAATCAGTAAACTGAGCAAAATATCCAAACATTTAATCGAAACAAGAAAATGAAGCCAATTGTATACTATTTTAAGTTAAACATTGTTTTAATCGCAAATACTTTGCATATATTTTTCCAGATTAACGGTACACAGCAGCAGCTCCCATTGCCAGGCAGCGGCGCCAGCGG ****************************************************************************************************...........................((((((....(((..(((......)))...)))..))))))...............***************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M025 embryo	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	M023 head	O002 Head	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR902008 ovaries
.................................................................................................................................................................................................TATCAAGATTAACGGTACACAGC..................................	23	2	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TTAACGGTACACAGCAGCAGCTCCCATT.....................	28	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................TCCAAACATTTAATCGAAACAAGAAAA.........................................................................................................................	27	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................AACATTGTTTTAATCGCAAATACTTTG.................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................ATTTTTCCAGATTAACGGTACACA....................................	24	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................AGCAGCTCCCATTGCCAGGCAGCGGC........	26	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................TTTTTCCAGATTAACGGTACGCA....................................	23	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AGCAGCTCCCATTGCCAGGC..............	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AACGGTACACAGCAGCAGCTC..........................	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................TCTGGAAAAACATGAAAA..................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................TAACATTTAATCGAAACAGTAAA..........................................................................................................................	23	3	4	0.50	2	0	0	0	0	0	0	0	0	2	0	0
............................................GTGACTTTCAGTGGGA..............................................................................................................................................................................................	16	1	4	0.25	1	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................GTTCCCAGGCAACGGCGCCA....	20	3	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................TACTATTGGAAGTTAGACAT.......................................................................................	20	3	8	0.13	1	0	0	0	0	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................TTCCCCGGCAACGGCGCCA....	19	3	20	0.10	2	0	0	0	0	0	0	0	0	0	1	1
...........................................................................AATTCAATCAGGAAAC...............................................................................................................................................................	16	1	11	0.09	1	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................ATACTATTTTGGGTTAAACC........................................................................................	20	3	12	0.08	1	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TCCCCGGCAGCGGCGCCA....	18	2	17	0.06	1	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................CGTATATTAGTCCAGATTA..............................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0
.............................................................................................................................................................................................TATTTTCCCAGATTAA.............................................	16	1	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0

GTACAGGTTAAAGAACAAATTAAGACCTTTTTGTACTTTTCAATCACTCAAAGTCACCCTAAATGCTGGTAAATATTAAGTTAGTCATTTGACTCGTTTTATAGGTTTGTAAATTAGCTTTGTTCTTTTACTTCGGTTAACATATGATAAAATTCAATTTGTAACAAAATTAGCGTTTATGAAACGTATATAAAAAGGTCTAATTGCCATGTGTCGTCGTCGAGGGTAACGGTCCGTCGCCGCGGTCGCC ***************************************************************...........................((((((....(((..(((......)))...)))..))))))...............****************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR902008 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
..................................................................TGGTAAATATTAAGTTAGTCATTTGAC.............................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0
.....................................................................................................TAGGTTTGTAAATTAGCTTTG................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0
....................................................................GTGATTATTAAGTTAGCCAT..................................................................................................................................................................	20	3	4	0.25	1	0	0	1	0	0	0
.........................................................................................................................................................................................GCATATAATCAGGTCTAAT..............................................	19	3	20	0.15	3	2	0	1	0	0	0
............................................CACTCAAAGTCACTCCAACT..........................................................................................................................................................................................	20	3	8	0.13	1	0	0	1	0	0	0
.......................................................................................TTGGTCTCGTTTTATAGGTGT..............................................................................................................................................	21	3	8	0.13	1	0	0	0	1	0	0
......................................................................AAATATTAAGTTAGCCATC.................................................................................................................................................................	19	2	10	0.10	1	0	0	0	0	1	0
.............................................................................................................TAAAATAGCTTTTTTCTTTT.........................................................................................................................	20	2	12	0.08	1	0	0	0	0	0	1
.........................................................ACGAAATGCTGGTAAATA...............................................................................................................................................................................	18	2	13	0.08	1	0	0	0	1	0	0
........................................................................ATATTAAGTTAGCCA...................................................................................................................................................................	15	1	20	0.05	1	0	0	0	1	0	0

Species	Coordinate	ID	Alignment
droSim2	3l:105007-105256 +	dsi_2773	CATGT--CCAATTTCTTGTTTAAT-----TCTGG----------------AAAAA-CATGAAAAGTTAGT-----------------------GAGTTTCAGTGGGATTTACGACCATTTATAATTCAATCAGTAAACTG------------------------------------AGCAAAATATCCAAACATT-TAATCGAAACAAGAAAATG-AA--------------------------------GCCAATTGTATACTATTTTA-------------------------------------------AGTTAAACATTGT-------------------------TTTAATCGCAAATACT-TTGCATATATTT---------------------------TTCCAGA-TTAACGGTACACAGCAGCAGC----------------------T-----CCCATTGCCA--GGCAGCGG----CGCCAGCGG-
droSec2	scaffold_2:154466-154715 +		CATGT--CCAATTTCTCGTTTAAT-----TCTGG----------------AAAAA-CATGAAAAGTTAGT-----------------------GAGTTTCAGTGGGATTTACGACCATTTATAATTCAATCAGTAAACTG------------------------------------AGCAAAATATCCAAACATT-TAATCGAAACAAGAAAATG-AA--------------------------------GCCAATTGTATACTATTTTA-------------------------------------------AGTTAAACATTGT-------------------------TTTAATCGCAAATACT-TTGCATATATTT---------------------------TTCCAGA-TTAACGGTACACAGCAGCAGC----------------------T-----CCCATTGCCA--GGCAGCGG----CGCCAGCGG-
dm3	chr3L:135253-135507 +		CATGT--CAAATTTCTCGTTTAATATAAGTCTGG----------------AAAAATCATGAAAAGTTAGT-----------------------GAGTTTCAGAGGAAGTTACGACCATTTGGAATTCAAGCAGTA--CTG------------------------------------AGCAAAATATCCAAACATT-TAATCGAAACAAGAAGGTGGAG--------------------------------GCAAATTATATTTTATATTA-------------------------------------------AATTAAATATTGT-------------------------TTTAATCGCAAATACT-TTGCATATATTT---------------------------TTCCAGA-TCAACGGTACACAGCAACAGC----------------------T-----CCAATTGCCA--GGCAGCGG----CGCTAGCGG-
droEre2	scaffold_4784:114118-114377 +		CGTGT--CCAATTTCTCGTTTAGTATAAGTCTCG----------------AAAGT-CGAGAGAAGTGAGT----TGGGGGTTTTTCTTTGTAA--------------ATTACGACCATTTGAAATTGAATCAGTAAACTC------------------------------------GGCAAAATATCAAAACATTGTAATCAAAACAAGGAG--G-AA--------------------------------GCAAATGATGTACTATATTA-------------------------------------------AATTTAGCATTGT-------------------------TTTAATCGCAAATACT-TTGCATATATT--------------------------TTTTCCAGA-TTAACGGTACACAGCAGCAGC----------------------T-----CCAATTGCCA--GGAAGCGG----CGCTAGCGG-
droYak3	3L:104944-105206 +		CGTGT--CCAATTCCTCGTTTAATATAAGCCTCG----------------AAAAACCAAGAGAAGT----GCGTTGGGGGGTTTTATTTGTAA--------------ATCGCGACCATTTGGAATTGAATCAGTAAACTG------------------------------------A-CAAAATGTCAAAACAATGTAATCGAAACAAGAAGGAGAAA--------------------------------GAAAATTATGTACTATATTT-------------------------------------------TATTTAGCATTGT-------------------------TTTAATCGCAAATACT-TTGCAAATATT--------------------------GTTTCCAGA-TTAACGGTGCACAGCAGCAGC----------------------T-----CCAATTGCCA--GGCAGTGG----CGCTAGCGG-
droEug1	scf7180000409802:954023-954197 -		TAGAA--T---------------------------------------------------------------------------------------------------------------------GCAAACAGAAATTGA------------------------------------TACAAAATATCGAAGCGTT-AAAAAGTATTTAAAAAATA-AA--------------------------------ATTAATTATATTTGCTGTTA-----------------------------------------------------------------------------------------------TT-TCATTTCTCACA---------------------------TTTAAAACTTGTTTTGACACCAGAATTTCATTAAATTTTTGTCAGTGTAGCTTAAAGCCAGTCATCA--AT----CA----ATCCCACTG-
droBia1	scf7180000300910:230018-230281 -		CGTGT--TCGATTCCACTTTCAATGGCAGCCTGT----------------TGAGAGCC--------------------------------------------------------------------------------TTGGTGGTCAACGGAAAAGAAAGTGCGTGGTGGGGCTGGGCTATGCGCTC------------------AAGGGG--C-ATGCCC---------------------------------------------------CAGAAGTACTCTAAAATCGGGAATGGGTTGGGGTTATATGAATTATAGTAAATGACCGTAAGCTGGAGTTAACCAGGCACTAATG---AACATCGCCTTCTGTATC--------------------------CCTTGCAGA-CAAACGGCACTCAGCAGCAAC----------------------T-----CCAATCGCCC--AGCAGCGG----CGCCAGCGC-
droTak1	scf7180000413899:124715-124787 -		TTCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATC--------------------------TTTTTCAGA-TTAACGGTACTCAACAGCAGC----------------------T-----TCAATCGCCAATCGCAGCGGCCGCCGTCGTCTC-
droEle1	scf7180000491249:235838-235923 -		TTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCATAAATATTCCCGTCTATGTCT---------------------------TCGCAGA-TTAACGGTACACAGCAACAGC----------------------T-----CCAATCGCCA--AGTAGCGG----CGCCAGCGG-
droRho1	scf7180000762853:123225-123310 -		TTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCATGTATATCCCCGTCTATATTT---------------------------TCGCAGA-TTAACGGTACACAGCAACAAC----------------------T-----CCAATCGCCA--AGCAGCGG----CGCCAGCGG-
droFic1	scf7180000453829:922357-922510 -		ATTTGAACATAT--------------------------------------TAAG----------------------------------------------------------------------------------------------ACAAAAAAA------------------------AAATTGA----------------------------AA--------------------------------ATGTATTGTTTAGAATTTAG------------------------AATTAGTTGC---------TTGG-----TTTA-------------------------TTTATTAGTAAACAGG-TTA-ATTTGACT---------------------------TTCCAGA-CCAGCGGCAACTTTCTGCGG-----------------------------CCGATCGCCT--TTAAGCCA---ATTCCGTTTG-
droKik1	scf7180000301710:294633-294802 +		ATTAA--CAATT-----------------------------ATAATCAAC--------------------AAATTGGGGGAACATTCTTGTTA--------------ATTGTG---------------------------------------------------------------------------------------------------------------------CTGAAAAAATACGGAGAATATTCAATTCGATTTTATTTTT-------------------------------------------AAT-----------------------------------------TG------TTTATTTATATATGC---------------------------TTGCAGA-TTAACGGTACACAGCAGCAGCAGCAGCTCC-------------T-----TCAATCGCC-----CAGCGG----CGCCAGCAG-
droAna3	scaffold_12948:394720-394785 -		TTTAA--GGTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAACATCAC-------------------------TTTAATTGCGGAAACT-TTGGTTTTGGGT---------------------------TTCAAGACTGAACAGTA--------------------------------------------------------------------------
droBip1	scf7180000396734:40146-40274 -		TTTAT--TCAAATTTTTGTTTAAT-----TATTA----------------AAGAA-A------------------------------------------------------------------------------------------------ATGGAAAATTCTT----------------------------------------------------ATTAATTTTAATGTTTT-----------------------GCCTAA------ATTTGTAAGTT--TTT---------------------------AAGATTTATTTAT-------------------------GGTCATA---AA----------------------ATACAAATTATATTAT----------------------------------------------------------------------------------------TTAATTGA-
dp5	XR_group8:1009820-1010002 -		CGTGT--TGGGGTCCG------------------GCCACTGTTGATTAAC--------------------AGA--------------------------------------------------------------------------------GTGGGGAGCCCT-----------------------------------------------------GCCCATGTTAAGTTAACAG---------------------------------AGTTGGAACTGCTTTA---------------------------AACTCTGACCTGT-------------------------TCTCATC---CA----------------------GATCGTTCTCTGTCTTCTCTCCTTGCAGA-GCAACGGTACACAACAACAGCAGCAGC----------------T-----TC---AGCCC--TGCAGCGG----GGCCAGCAT-
droPer2	scaffold_32:465523-465705 +		CGTGT--TGGGGTCCG------------------GCCACTGTTGATTAAC--------------------AGA--------------------------------------------------------------------------------GTGGGGAGCCCT-----------------------------------------------------GCCCATGTTAAGTTAACAG---------------------------------AGTTGGAACTGCTTTA---------------------------AACTCTGACCTGT-------------------------TCTCATC---CA----------------------GATCGTTCTCTGTCTTCTCTCCTTGCAGA-GCAACGGTACACAACAACAGCAGCAGC----------------T-----TC---AGCCC--TGCAGCGG----GGCCAGCAT-
droWil2	scf2_1100000004521:4410164-4410281 -		TTTAA--TTGCAAAAA------------------AAAATTAAATACTATC--------------------AAA--------------------------------------------------------------------------------CTGTTTATTCGT-----------------------------------------------------G--------------------------------------------TCTTTTG-------------------------------------------AATTAAACAAAAT-------------------------GTTGACCTCAAATTGT-TTAAATATATTT---------------------------AAATAAA-TTAATTACACGGACCAG------------------------------------------------------------------
droVir3	scaffold_12875:543858-543949 +		AACGT--CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------TACAACAGCAACAACT-CGGCAATTGGCAAGTCA--------------------AATTACGG----A---ACACAACGCGGCGGC----------------------A-----ACGATGGCA----ACAACAG----CAACAGCAGC
droMoj3	scaffold_6680:7397289-7397362 +		AATTC--TCAAC-----------------------------------------------------------------------------------------------------------------------------AAA------------------------------------AACAAAGTTTATCAAAATT-TGATTAATAAACTAAAACG-AA--------------------------------ATAAATTTTATATTATTTTA-------------------------------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_2727:72-149 +		AAAAA--CTAGT---------------------------------------------------------------------------------GAATGTATATTTGCTCTATTTTTCGTTATAATTCTATCGACAACCTT------------------------------------GATAATATATACAAATATA-TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CATGT--CCAATTTCTTGTTTAAT-----TCTGG----------------AAAAA-CATGAAAAGTTAGT-----------------------GAGTTTCAGTGGGATTTACGACCATTTATAATTCAATCAGTAAACTG------------------------------------AGCAAAATATCCAAACATT-TAATCGAAACAAGAAAATG-AA--------------------------------GCCAATTGTATACTATTTTA-------------------------------------------AGTTAAACATTGT-------------------------TTTAATCGCAAATACT-TTGCATATATTT---------------------------TTCCAGA-TTAACGGTACACAGCAGCAGC----------------------T-----CCCATTGCCA--GGCAGCGG----CGCCAGCGG-	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTAACGGTACACAGCAGCAGC----------------------T-----CCCATT............................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TCCAAACATT-TAATCGAAACAAGAAAA.............................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AACATTGT-------------------------TTTAATCGCAAATACT-TTG...............................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................ATTT---------------------------TTCCAGA-TTAACGGTACACA......................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC----------------------T-----CCCATTGCCA--GGCAGCGG----C.........	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC----------------------T-----CCCATTGCCA--GGC...................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTACACAGCAGCAGC----------------------T-----C.................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................TCTGG----------------AAAAA-CATGAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CATGT--CCAATTTCTCGTTTAAT-----TCTGG----------------AAAAA-CATGAAAAGTTAGT-----------------------GAGTTTCAGTGGGATTTACGACCATTTATAATTCAATCAGTAAACTG------------------------------------AGCAAAATATCCAAACATT-TAATCGAAACAAGAAAATG-AA--------------------------------GCCAATTGTATACTATTTTA-------------------------------------------AGTTAAACATTGT-------------------------TTTAATCGCAAATACT-TTGCATATATTT---------------------------TTCCAGA-TTAACGGTACACAGCAGCAGC----------------------T-----CCCATTGCCA--GGCAGCGG----CGCCAGCGG-	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................AAAAGTTAGT-----------------------GAGTTTCAGTGGG........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................AACAAGAAAATG-AA--------------------------------GCCA....................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC----------------------T-----CCCATTGCCA--GGCAGCGG----CG........	27	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGGTACACAGCAGCAGC----------------------T-----..................................	21	1	1.00	1	0	0	0	1
....................................................................................................................................................................................................................ATG-AA--------------------------------GCCAATTGTATACTATTTTA-------------------------------------------AGTT.....................................................................................................................................................................................	29	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----CCCATTGCCA--GGCAGCGG----CGCCAGC...	26	1	1.00	1	0	0	1	0

dm3

CATGT--CAAATTTCTCGTTTAATATAAGTCTGG----------------AAAAATCATGAAAAGTTAGT-----------------------GAGTTTCAGAGGAAGTTACGACCATTTGGAATTCAAGCAGTA--CTG------------------------------------AGCAAAATATCCAAACATT-TAATCGAAACAAGAAGGTGGAG--------------------------------GCAAATTATATTTTATATTA-------------------------------------------AATTAAATATTGT-------------------------TTTAATCGCAAATACT-TTGCATATATTT---------------------------TTCCAGA-TCAACGGTACACAGCAACAGC----------------------T-----CCAATTGCCA--GGCAGCGG----CGCTAGCGG-	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................................................................................................CGAAACAAGAAGGTGGAG--------------------------------........................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGTACACAGCAACAGC----------------------T-----CCA...............................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------------------T-----CCAATTGCCA--GGCAGCGG----C.........	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGA-TCAACGGTACACAGCAACA................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTTCAGAGGAAGTTACGACCATTTGGA.......................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................AGTTACGACCATTTGGAATT....................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAGC----------------------T-----CCAATTGCCA--GGC...................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................GTTAGT-----------------------GAGTTTCAGAGGAAGTTAC..................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................TCATGAAAAGTTAGT-----------------------GAGTTTCAGAGGA........................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................TACACAGCAACAGC----------------------T-----CCAATTGCCA--GG....................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAGC----------------------T-----CCAATTGCCA--GGCAGC................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TATAAGTCTGG----------------AAAAATCATGAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GTTTAATATAAGTCTGG----------------AAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................TTCAAGCAGTA--CTG------------------------------------AGCAAAATATCCAA....................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................AAAAGTTAGT-----------------------GAGTTTCAGAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCA--GGCAGCGG----CGCTAG....	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCCA--GGCAGCGG----CG........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GC----------------------T-----CCAATTGCCA--GGCAGCGG----CGCTAG....	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CGTGT--CCAATTTCTCGTTTAGTATAAGTCTCG----------------AAAGT-CGAGAGAAGTGAGT----TGGGGGTTTTTCTTTGTAA--------------ATTACGACCATTTGAAATTGAATCAGTAAACTC------------------------------------GGCAAAATATCAAAACATTGTAATCAAAACAAGGAG--G-AA--------------------------------GCAAATGATGTACTATATTA-------------------------------------------AATTTAGCATTGT-------------------------TTTAATCGCAAATACT-TTGCATATATT--------------------------TTTTCCAGA-TTAACGGTACACAGCAGCAGC----------------------T-----CCAATTGCCA--GGAAGCGG----CGCTAGCGG-	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC----------------------T-----CCAATTGCCA--GGAAGC................	23	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................A-TTAACGGTACACAGCAGCAGC----------------------T-----CC................................	25	1	1.00	1	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GC----------------------T-----CCAATTGCCA--GGAAGCGG----C.........	22	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------------------T-----CCAATTGCCA--GGAAGCGG----..........	20	1	1.00	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGC----------------------T-----CCAATTGCCA--GGAAGC................	28	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATTGCCA--GGAAGCGG----CGCT......	22	1	1.00	1	0	0	0	0	1	0	0

droYak3

CGTGT--CCAATTCCTCGTTTAATATAAGCCTCG----------------AAAAACCAAGAGAAGT----GCGTTGGGGGGTTTTATTTGTAA--------------ATCGCGACCATTTGGAATTGAATCAGTAAACTG------------------------------------A-CAAAATGTCAAAACAATGTAATCGAAACAAGAAGGAGAAA--------------------------------GAAAATTATGTACTATATTT-------------------------------------------TATTTAGCATTGT-------------------------TTTAATCGCAAATACT-TTGCAAATATT--------------------------GTTTCCAGA-TTAACGGTGCACAGCAGCAGC----------------------T-----CCAATTGCCA--GGCAGTGG----CGCTAGCGG-	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC----------------------T-----CCAATTGCCA--GGCAGT................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----CCAATTGCCA--GGCAGTGG----C.........	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................TCGAAACAAGAAGGAGAAA--------------------------------GAAA....................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAGCAGCAGC----------------------T-----CC................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................AAACAAGAAGGAGAAA--------------------------------GAAAATTAT...............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC----------------------T-----CCAATTGCCA--GGCAGT................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----CCAATTGCCA--GGCAGTGG----CGCT......	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

TAGAA--T---------------------------------------------------------------------------------------------------------------------GCAAACAGAAATTGA------------------------------------TACAAAATATCGAAGCGTT-AAAAAGTATTTAAAAAATA-AA--------------------------------ATTAATTATATTTGCTGTTA-----------------------------------------------------------------------------------------------TT-TCATTTCTCACA---------------------------TTTAAAACTTGTTTTGACACCAGAATTTCATTAAATTTTTGTCAGTGTAGCTTAAAGCCAGTCATCA--AT----CA----ATCCCACTG-	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGTGT--TCGATTCCACTTTCAATGGCAGCCTGT----------------TGAGAGCC--------------------------------------------------------------------------------TTGGTGGTCAACGGAAAAGAAAGTGCGTGGTGGGGCTGGGCTATGCGCTC------------------AAGGGG--C-ATGCCC---------------------------------------------------CAGAAGTACTCTAAAATCGGGAATGGGTTGGGGTTATATGAATTATAGTAAATGACCGTAAGCTGGAGTTAACCAGGCACTAATG---AACATCGCCTTCTGTATC--------------------------CCTTGCAGA-CAAACGGCACTCAGCAGCAAC----------------------T-----CCAATCGCCC--AGCAGCGG----CGCCAGCGC-	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATC--------------------------TTTTTCAGA-TTAACGGTACTCAACAGCAGC----------------------T-----TCAATCGCCAATCGCAGCGGCCGCCGTCGTCTC-	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCATAAATATTCCCGTCTATGTCT---------------------------TCGCAGA-TTAACGGTACACAGCAACAGC----------------------T-----CCAATCGCCA--AGTAGCGG----CGCCAGCGG-	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCATGTATATCCCCGTCTATATTT---------------------------TCGCAGA-TTAACGGTACACAGCAACAAC----------------------T-----CCAATCGCCA--AGCAGCGG----CGCCAGCGG-	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATTTGAACATAT--------------------------------------TAAG----------------------------------------------------------------------------------------------ACAAAAAAA------------------------AAATTGA----------------------------AA--------------------------------ATGTATTGTTTAGAATTTAG------------------------AATTAGTTGC---------TTGG-----TTTA-------------------------TTTATTAGTAAACAGG-TTA-ATTTGACT---------------------------TTCCAGA-CCAGCGGCAACTTTCTGCGG-----------------------------CCGATCGCCT--TTAAGCCA---ATTCCGTTTG-	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATTAA--CAATT-----------------------------ATAATCAAC--------------------AAATTGGGGGAACATTCTTGTTA--------------ATTGTG---------------------------------------------------------------------------------------------------------------------CTGAAAAAATACGGAGAATATTCAATTCGATTTTATTTTT-------------------------------------------AAT-----------------------------------------TG------TTTATTTATATATGC---------------------------TTGCAGA-TTAACGGTACACAGCAGCAGCAGCAGCTCC-------------T-----TCAATCGCC-----CAGCGG----CGCCAGCAG-	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TTTAA--GGTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAACATCAC-------------------------TTTAATTGCGGAAACT-TTGGTTTTGGGT---------------------------TTCAAGACTGAACAGTA--------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

TTTAT--TCAAATTTTTGTTTAAT-----TATTA----------------AAGAA-A------------------------------------------------------------------------------------------------ATGGAAAATTCTT----------------------------------------------------ATTAATTTTAATGTTTT-----------------------GCCTAA------ATTTGTAAGTT--TTT---------------------------AAGATTTATTTAT-------------------------GGTCATA---AA----------------------ATACAAATTATATTAT----------------------------------------------------------------------------------------TTAATTGA-	Size	Hit Count	Total Norm	Total
No Reads

dp5

CGTGT--TGGGGTCCG------------------GCCACTGTTGATTAAC--------------------AGA--------------------------------------------------------------------------------GTGGGGAGCCCT-----------------------------------------------------GCCCATGTTAAGTTAACAG---------------------------------AGTTGGAACTGCTTTA---------------------------AACTCTGACCTGT-------------------------TCTCATC---CA----------------------GATCGTTCTCTGTCTTCTCTCCTTGCAGA-GCAACGGTACACAACAACAGCAGCAGC----------------T-----TC---AGCCC--TGCAGCGG----GGCCAGCAT-	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC----------------T-----TC---AGCCC--TGCAGCGG----..........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................A-GCAACGGTACACAACAACAGCAG............................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGC----------------T-----TC---AGCCC--TGCA..................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGGTACACAACAAC.................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CGTGT--TGGGGTCCG------------------GCCACTGTTGATTAAC--------------------AGA--------------------------------------------------------------------------------GTGGGGAGCCCT-----------------------------------------------------GCCCATGTTAAGTTAACAG---------------------------------AGTTGGAACTGCTTTA---------------------------AACTCTGACCTGT-------------------------TCTCATC---CA----------------------GATCGTTCTCTGTCTTCTCTCCTTGCAGA-GCAACGGTACACAACAACAGCAGCAGC----------------T-----TC---AGCCC--TGCAGCGG----GGCCAGCAT-	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................................................................................................................................................................................................................................................GAACTGCTTTA---------------------------AACTCTGACCT..............................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGA-GCAACGGTACACAACA...................................................................	19	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................GTTAACAG---------------------------------AGTTGGAATGA.........................................................................................................................................................................................................................	19	14	0.07	1	0	0	0	0	0	1

droWil2

TTTAA--TTGCAAAAA------------------AAAATTAAATACTATC--------------------AAA--------------------------------------------------------------------------------CTGTTTATTCGT-----------------------------------------------------G--------------------------------------------TCTTTTG-------------------------------------------AATTAAACAAAAT-------------------------GTTGACCTCAAATTGT-TTAAATATATTT---------------------------AAATAAA-TTAATTACACGGACCAG------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

AACGT--CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------TACAACAGCAACAACT-CGGCAATTGGCAAGTCA--------------------AATTACGG----A---ACACAACGCGGCGGC----------------------A-----ACGATGGCA----ACAACAG----CAACAGCAGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................GCAACAACT-CGGCAATTGGCA......................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................T-------------------------TACAACAGCAACAACT-CGGCAAT...........................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................CAACAACT-CGGCAATTGGCAAGT...................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................ATTGGCAAGTCA--------------------AATTACGG----A---AC...........................................................................	23	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------------------A-----ACGATGGCA----ACAACAG----CAA.......	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGGCGGC----------------------A-----ACGATGGCA----.....................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------TACAACAGCAACAACT-CGGCAATT..........................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACGCGGCGGC----------------------A-----ACGATGGCA----A....................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAACT-CGGCAATTG.........................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAACT-CGGCAAT...........................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAACAACT-CGGCAATTGGC.......................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TGGCAAGTCA--------------------AATTACGG----A---ACACA........................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GCAACAACT-CGGCAATTGGCAAG....................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................AGTCA--------------------AATTACGG----A---ACACAACGC....................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------TACAACAGCAACAACT-CGGC..............................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCGGCGGC----------------------A-----ACGATGGCA----AC...................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................AACAACT-CGGCAATTGGCAAGT...................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................ACGG----A---ACACAACGCGGCGGC----------------------........................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................A---ACACAACGCGGCGGC----------------------A-----ACGATGG...........................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----ACGATGGCA----ACAACAG----CAACAGCAGC	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................CAACAACT-CGGCAATTGGCAAG....................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................ATTACGG----A---ACACAACGCGGCGG...............................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATGGCA----ACAACAG----CAACAGCAGC	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................ATTGGCAAGTCA--------------------AATTACGG----A---.............................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACT-CGGCAATT..........................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AACGT--CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------TACAACAGCAACAA.....................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TACAACAGCAACAACT-CGG...............................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TACAACAGCAACAACT-CGGCAATTGG........................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................CAATTGGCAAGTCA--------------------AATTACGG----A---.............................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................AATTGGCAAGTCA--------------------AATTACGG----A---AC...........................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AATTC--TCAAC-----------------------------------------------------------------------------------------------------------------------------AAA------------------------------------AACAAAGTTTATCAAAATT-TGATTAATAAACTAAAACG-AA--------------------------------ATAAATTTTATATTATTTTA-------------------------------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

AAAAA--CTAGT---------------------------------------------------------------------------------GAATGTATATTTGCTCTATTTTTCGTTATAATTCTATCGACAACCTT------------------------------------GATAATATATACAAATATA-TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_2773

3l:105057-105206 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-3.3	-3.3	-3.3