ID:

dsi_27687

 Coordinate:

3r:15857978-15858127 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.25 -12.05 -11.95

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AAGTTTTTGAATCAAGCCTGTGTAATTTCCACCCACAACGAATTGAAAAAGTAAGTGAATTCAAACGAGAAAAAGAAAATTATAAATTATTTCATTTTCCTCTTCGGTCGCCTACGTTGCTTACTCACCACTAGTCGATTCCCCACGCTCTCTCTCTCTTCACCACAGTCACCAATACACACGGGCTCGCCTACGTCACTTTGTCGTGTGTGTGTGTGCTTAGACTAGCGTTGCCATGTCGCGCGAATTA
***************************************************...((((..((.((.(((.((((..((((........))))..)))).))))).))))))..................(((((.(((...(((......................................))).))).))).)).***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 O002
Head
 SRR902009
testis
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
.............................CACCCACAACGAATTGAAAAACTC..................................................................................................................................................................................................... 24 2 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.................................CACAACGAATTGAAAAACTC..................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAGTGAATTCAAACGAG..................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................CACCAATACACACGGGCTCGCCTACGTC..................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................CAGTCACCAATACACACGGGC................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...TTTTTGAATCAAGCCTGTGTAATT............................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.....TTTGAATCAAGCCTGTGTAATTTCCACCCA....................................................................................................................................................................................................................... 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................CTGTGTAATTTCCACCCACAACG.................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
............CAAGCCTGTGTAATTTCC............................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............CAAGCCTGTGTAATTTCCACCCACAAC................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................GTAATTTCCACCCACAACGA................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
................................CCACAACGAATTGAAAAA........................................................................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....TTTGAATCAAGCCTGTGTAATTT.............................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TTGTCGTGTGTGTGTGTGCTTAGACT........................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....TTTTGAATCAAGCCTGTGTAATT............................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............CAAGCCTGTGTAATTTCCACCC........................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
....TTTTGAATCAAGCCTGTGTAA................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...........................................TGAAAAAGTACGTGA................................................................................................................................................................................................ 15 1 20 0.90 18 0 0 0 0 0 18 0 0 0 0 0 0
..................................ACAACGAATTGAAAAACT...................................................................................................................................................................................................... 18 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................TGAAAAAGTACGTGAA............................................................................................................................................................................................... 16 1 12 0.42 5 0 0 0 0 0 5 0 0 0 0 0 0
...........................................TGAAAAAGTAAGTGAATTGTGA......................................................................................................................................................................................... 22 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................GGTCGTCTGCGTCGCTTAC.............................................................................................................................. 19 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................CTTCACCGCTGTCACCA............................................................................ 17 2 19 0.11 2 0 0 0 0 0 0 0 0 0 0 2 0

Anti-sense strand reads

TTCAAAAACTTAGTTCGGACACATTAAAGGTGGGTGTTGCTTAACTTTTTCATTCACTTAAGTTTGCTCTTTTTCTTTTAATATTTAATAAAGTAAAAGGAGAAGCCAGCGGATGCAACGAATGAGTGGTGATCAGCTAAGGGGTGCGAGAGAGAGAGAAGTGGTGTCAGTGGTTATGTGTGCCCGAGCGGATGCAGTGAAACAGCACACACACACACGAATCTGATCGCAACGGTACAGCGCGCTTAAT
*****************************************************...((((..((.((.(((.((((..((((........))))..)))).))))).))))))..................(((((.(((...(((......................................))).))).))).)).*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR902009
testis
 O002
Head
 SRR1275487
Male larvae		 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 GSM343915
embryo
 M025
embryo
..................................................................................................GGAGAGTCCAGCCGATGCA..................................................................................................................................... 19 3 7 12.57 88 68 19 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................GTGGGAGATACAGAGAAGTG....................................................................................... 20 3 3 10.67 32 25 4 0 0 0 0 1 0 1 1 0 0 0 0 0
..............................................................................................................................................GGTGGGAGATACAGAGAAGTG....................................................................................... 21 3 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TGGGAGATACAGAGAAGTG....................................................................................... 19 3 10 3.90 39 20 9 0 0 0 0 3 0 1 0 3 0 0 1 2
.............................................................................................................................................GGGTGCGAGAGAGAG.............................................................................................. 15 0 4 3.00 12 0 0 0 12 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................AAGTGGGGTCAGTGCTT........................................................................... 17 2 3 2.67 8 0 0 5 0 2 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................GAAGTGGGGTCAGTG.............................................................................. 15 1 6 2.00 12 0 0 6 0 5 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................GAAGTGGGGTCAGTGCTTAGG........................................................................ 21 3 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................GAAGTGGGGTCAGTGCTT........................................................................... 18 2 2 1.50 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CCCGAGCGGATGCAGTGAAAC............................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................AAGTGGGGTCAGTGCTTAGG........................................................................ 20 3 3 1.00 3 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0
.........................................................TTAAGTTTGCTCTTTTTCTTT............................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TGAAGTGGGGTCAGTGCTTA.......................................................................... 20 3 5 0.60 3 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GGTGCGAGAGAGAGA............................................................................................. 15 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................AAGTGGGGTCAGTGCTTA.......................................................................... 18 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................AGAAGTGGTGTCAGTACTT........................................................................... 19 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................GAAGTGGGGTCAGTGCTTAG......................................................................... 20 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................GAAGTGGGGTCAGTGCTTG.......................................................................... 19 3 12 0.42 5 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................ATGGGTGCGAGAGAGA............................................................................................... 16 1 5 0.40 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GGTGGGAGATACAGAGAAGT........................................................................................ 20 3 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................GTGGGAGATACAGAGAAGT........................................................................................ 19 3 13 0.38 5 2 1 0 0 0 0 0 0 0 1 1 0 0 0 0
............................................................................................................................................................TGAAGTGGTGTCAGTGCTT........................................................................... 19 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................AGGGTGGGTGTTAATTAACTTTT......................................................................................................................................................................................................... 23 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GGTGGGAGATACAGAGAAG......................................................................................... 19 3 20 0.25 5 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................ATATGCGAGAGAGAGAGAAGTGGTG.................................................................................... 25 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................GCGAGAGTGCGAGAAGTGGTGTCAAT............................................................................... 26 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................AAGTGGGGTCAGTGATT........................................................................... 17 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................GTGCGAGAGGGAGAGAAGTGGTG.................................................................................... 23 1 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................GTGCGAGAGGGAGAGAAATGGTGTC.................................................................................. 25 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...AAAAAATTAGTTCGGTCACA................................................................................................................................................................................................................................... 20 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................AAGTGGGGTCAGTGCTTG.......................................................................... 18 3 20 0.20 4 0 1 2 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGAGGGGTGGTCAGCTA............................................................................................................... 17 2 11 0.18 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................AAGTGGGGTCAGTAGTT........................................................................... 17 2 15 0.13 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................GAAGTGATGACGGTGGTTAT......................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................ATGGGTGCGAGAGAG................................................................................................ 15 1 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TAAGTGGGGTCAGTGCTT........................................................................... 18 3 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TGGGTGCGAGAGAGAGCGAAGG........................................................................................ 22 3 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................AAGTCGTGTCAGTGATAAT......................................................................... 19 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TGGGTGCGAGAGAGAGAGC........................................................................................... 19 2 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GTGATCTGCTAGGGGGT......................................................................................................... 17 2 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................GAAGTGGGGTCAGTGTT............................................................................ 17 2 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGAGTGGTGGTCAGTTA............................................................................................................... 17 2 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..CAAAAGGTTAGTTCGGAC...................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................AAGTGGGGTCAGTGCTTT.......................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................AAGTGGGGTCAGTGAT............................................................................ 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................AAGTGGGGTCAGTGGTC........................................................................... 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................AGTGGGGTCAGTGATT........................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................GAGGGGTGATCAGTTA............................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:15857928-15858177 - dsi_27687 AAGTTTTTGAA--TCAAGC-CTGTGTAATTTC--CACCC---ACAACGAATTGA------------------------------AA-AAGTAAGT-GAAT---TC----------AAACGAGA-A-A---------------AAG---AAAATTATAAATTATTTCATTTTC-CTCTTCGGTCGCCTACGTTG------------------CTT-ACTCACCAC-------------------------------------------------TAGT----CGATTCCCCACGCTCTCTCTC------------TCTTCACCACAGT------------------------------CACCAATACACACG--GGCTCGCCTACGTCACT----TTGTCGTGTG-TGTGTGTG--------------------------------CTTAGACTAGCGTTGCCATGTCGCGCGAATTA
droSec2 scaffold_0:16726776-16727023 - AAGTTTTTGAA--TCAAGC-CTGTGTAATTTC--CACCC---ACAACGAATTGA------------------------------AA-AAGTAAGT-GAAT---TC----------AAACGAGA-A-A---------------AAG---AAAATTATAAATTATTTCATTTTC-CTCTTCGGTCGCCTACGTTG------------------CTT-ACTCACCAC-------------------------------------------------TAGT----CGATTCCCCACGCTCTCTCTC------------TCTTCACCACAGT------------------------------CACCAATACACACG--GGCTCGCCTACGTCACT----TTGTCGTGTGT-GT--GTG--------------------------------CTTAGACTAGCGTTGCCATGTCGCGCGAATTA
dm3 chr3R:5168164-5168409 + AAGTTTTTGAT--TCAAGC-CTGTGTAATTTC--CACCC---ACAACGAATTGA------------------------------AA-AAGTAAGT-GAAT---TC----------AAATGAGA-A-A---------------AAG---AAAATTATAATTTATTTCATTTTC-CTCTTCGCTCGCCTACGTTG------------------CTT-ACTCACCAC-------------------------------------------------TAGT----CGATTCCCCACGCTCTCTCTC------------TCTTCACCACAGT------------------------------CACCAATACACACG--GGCTCGCCTACGTCACT----TTGTCGTGTGT-G----TG--------------------------------CTTAGACTAGCGTTGCCATGTCGCGCGAATTA
droEre2 scaffold_4770:16439069-16439310 - AAGTTTTTGTT--TCATGC-CTGTGTAATTTC--CACCC---ACAACGAATTGA------------------------------AA-AAGTAAGT-GAAT---TC----------AAACGAGA-AAA---------------AAG---AAAATTATAAATTATTTCATTTTC-CTCTTCGCTCGCCTACGTTG------------------GTT-ACTCACCAC-------------------------------------------------TAGT----CGATTCCCCACGCT----CTC------------TCTTCACCACAGT------------------------------CACCAA-ACACACG--GGCTCGCCTACGTCACT----TGTGCGTGTGT-GT--GT----------------------------------TTAGACTAGCGTTGCCATGTCGCGCGAATTA
droYak3 3R:9214479-9214725 + AAGTTTTTGTT--TCAAGC-CTGTGTAATTTC--CACCC---ACAACGAATTGG------------------------------AA-AAGTAAGT-GAAT---TC----------AAACGAGA-AAA---------------AAG---AAAATTATAAATTATTTCATTTTC-CTCTTCGCTCGCCTACGTTG------------------CTT-ACCCACCAC-------------------------------------------------TAGT----CGATTCCCCACGTTCT--CTC------------TCTTCACCACAGA------------------------------CACCAATACACACG--GGCTCGCCTACGTCACT----TGTGCGTGTGT-GT--GTG--------------------------------CTTAGACTAGCGTTGCCATGTCGCGCGAATCA
droEug1 scf7180000407136:540105-540369 - AAGTTTTTGTT--TCAAGC-CTGTGTAATTTC--CAGCCCGAAAAACGAATTGG-------------------AAA--------AA-AAGTAAGT-GAAT---TT----------AAACGAGA-A------------------AG---AAAATTATAAATTATTTCGTTTTC-CTCTTCGATGGCCTACGTTG------------------CTA-ACTCACCAC-------------------------------------------------TAGT----CGATTCCCCACGCTCTCTCTC------------TCTTCACCACAGT------------------------------CACCAATACACACG--GCTATGCCTACGTCACA----TGTGCGTGTG-TATGTGTGTTTGTGAG--------TT-----------TAG--TCGACTAGCGTTGCCATGTCGCGCGGAATA
droBia1 scf7180000302402:7898000-7898274 + AAGTTTTTGTT--TCAAGT-CTGTGTAATTTC--CAGCT---ACAACGAATTGG------------------------------AAGAAGTAAGT-GAAC---TC----------AAACGAGA-AAAAAATAACGAAAAACGAAG---AAAATTATAAATTATTTCATTTTC-CTCTTCGCTCGCCTAAGTTG------------------CTTAACTCACCAC-------------------------------------------------TGGT----CGATTCCCCACGCTCTCTCTCTCTCTGTCCGTCTCTTCACCTCAGG------------------------------CACCAATACACACG--GGCCTGCCTACGTCACA----TGTGCGTGTGT-GT--GTG-----------------------------------CGCCTAGCGTTGCCATGTCGCGAAATTCG
droTak1 scf7180000415818:140868-141122 - AAGTTTTTGTT--TCAAGC-CTGTGTAATTTT--CACCC---AAAACGAATTGG--------------------AA--------AA-AAGTAAGT-GAAT---AC----------GAACGAGA-AAAAA----A-----ACGAAG---AAAATTATAAATTATTTCATTTTC-CTCTTCGCTCGCCTACGTTG------------------CTTAACTCACCAC-------------------------------------------------CAGT----CGATTCCCCACGCTCTCTCTC------------TCTTCACCACAGG------------------------------CACCAATACACACG--GGCATGCCTACGTCACA----TGTGCGTGTG-TATGTGTG-----------------------------------CGACTAGCGTTGCCATGTCGC--GAAATA
droEle1 scf7180000491194:325533-325774 + GAGTTTTTGTT--TCAAGC-CAGTGTAATTTC--TACCC---AAAACGAATTGG------------------------------AA-AAGTAAGT-GAAT---TC----------GAACGAGA-AAAAA-------------AAG---AAAATTATAAATTATTTCATTTTC-CTCTTCGCTCGCCTACGTTG------------------CTT-ACTCACCAC-------------------------------------------------TAGT----CGATTCCCCACGCT----CTC------------TCTTCACCACAGG------------------------------CACCAATACACACG--GGCATGCCTACGTCACA----TTTGCGTGTGT-GT----G-----------------------------------GGACTAGCGTTGCCATGTCGCGCTAAATG
droRho1 scf7180000779488:377771-378016 + GAGTT-TTGTT--TCAAGC-CTGTGTAATTTC--TTCCC---AAAACGAATTGG------------------------------AA-AAGTAAGT-GAAT---TC----------GAACGAGA-AAAA--------------AAG---AAAATTATAAATTATTTCGTTTTC-CTCTTCGCTCGCCTACGTTG------------------CTT-ACTCACCAC-------------------------------------------------TAGT----CGATTCCCCACGCTCT--CTC------------TCTTCACCTCAGG------------------------------CACAAATACACACA--AGCATGCCTACGTCACA----TGTGCGTGTG-TGTGTGTG-----------------------------------CGACTAGCGTTGCCATGTCGCGCGAAATA
droFic1 scf7180000454106:2021453-2021703 - GAGTTTTTGTT--TCAAGC-CTGTGTAATTTCTCCACCC---AAATCGAATTGA------------------------------AA-AAGTAAGT-GAAT---TC----------GAACAAGA-AAA---------------AAG---AAAATTATAAATTATTTCATTTTC-CTCTTCGCTCGCCTACGTTG------------------CTT-ACTCACCAT-------------------------------------------------TAGT----CGATTCCCCACGGTTT--CTC------------TCTTCACCACAGA------------------------------CACAAATACACACA--GGCATGC-TACGTCACA----TGTGCGTATG-TGTGTGTG------T-------------------------CTGCGACTAGCGTTGCCATGTCGCGCGAAGTA
droKik1 scf7180000302388:1926936-1927186 - GAGTTTTTGTT--TCAAGC-CTGTGTAATTTC--CAC-----GAAACGGATTGG------------------------------AA-AAGTAAGT-GAAT---TC----------AATCGAGA-AAA---------------AAG---AAAATTATAAATTATTTCATTTTC-CTCTTCGCTCGCCTACGTTG------------------CGA-TTTCACCAC-------------------------------------------------CA-T----CAATTCCCCACGGTCACACTC------------TCTTCACCACAGC----------------------------CACACCAATACACACG--AGCGAGCCTACGTCACA----TGTGCGTGAGT-GT--GTGTATG--T---------------------------CTGGCTAGCGTTGCCATGTCGCGCGAAATA
droAna3 scaffold_13340:4876529-4876786 - GAGTTTTTGTT--TCAAAC-TCGTAAAATTCT--CATCA----GAA-AAACTG-------------------------------AA-AAGTAAGTCGAAT---TA----------TGACAAAA-AAAAAAAAAATAAAATT-GTGGAAAAAAAAATAAATTATTTCATTTTC-CCCTTC----GCCTACGTTG------------------CCT-TTTCACCAC-------------------------------------------------AA-TATTGCAACTCCCCACGGTCG----C------------TCTCCACCACGAC-----------------------------ACACCAATACACACA---GCATGCCTACGTCACA----TGTGCGCTCG-TGTGTGTG-----------------------------------TCGCGAGCGTTGCCATGTCGCGCGAAGTA
droBip1 scf7180000396359:312119-312356 + GAGTTTTTCTT--TAAAAC-TCATAAAATTTT--TATGA----GA--AAAACGG------------------------------AA-AAGTAAGT-GAAT---T-------------ATGAAA-AAAAA----------TT-GAG---GAAAAAATAAATTATTTCATTTTC-CCCTTC----GCCTACGTTG------------------CCT-TTTCACCAC-------------------------------------------------ATTG----CAACTCCCCACGGTCG----C------------TCTCCACCACGG-------------------------------CACCAATACACACA---GCATGCCTACGTCACA----TGTGCGTGTGTGGT----GTTTG------------------------------CTCGCGAGCGTTGCCATGTCGCGCAAAGTA
dp5 2:3256435-3256715 - GAGTTTTTGTTTTTCAAAT-TTGTGCAAATAC--CACAA---AAGTCGAAATA-----------------TTAAAA--------AA-AAGTAAGT-GC-----TG----------CAGCGAAGAA-A---------------AAG---AAAATT---TATTATTTCATTTTGTCTCT-------GTAAAAATG------------------CTT-ATTCACCACCATTAACAGCTAAAAAAT------------------------------------------TTCAACATGAATGTTCTC------------TGCTCACCACGGCAGACGTTATACA----------------CACATGCACACACACAATGGCAGACATACGTCACTCTGTT--GGGTGTG-TGTGTGTGTATG-------------------------GGA--CAGGCGAGCGTTGCCATGTCGCGCGAAACA
droPer2 scaffold_7:1085113-1085395 + GAGTTTTTGTTTTTCAAAT-TTGTGCAAATAC--CACAA---AAGTCGAAATA-----------------TTAAAA--------AA-AAGTAAGT-GC-----TG----------CAGCGAAGAA-A---------------AAG---AAAATT---TATTATTTCATTTTGTCTCT-------GTAAAAATG------------------CTT-ATTCACCACCATTAACAGCTAAAAAAT------------------------------------------TTCAACATGAATGTTCTC------------TGCTCACCACGGCAGACGTTATACA----------------CACATGCACACACACAATGGCAGACATACGTCACTCTGTT--GGGTGTGT-GT----GTTTGTGTA--------TG-----------GGA--CAGGCGAGCGTTGCCATGTCGCGCGAAACA
droWil2 scf2_1100000004902:3047805-3048049 - CAC-------------------------------CGCAC-AAAAAGAGAAAAA----TACAAATTGTTTAACAAAA--------AA-AAGTAAGT-TAAA--TTAAAGTGATATTTAATGAAA-AAAAAAAAAAGAG-----AAG-TAAAAATTATAAATTATTTCTTTCT--CGCTTCGTT----------------------------------TTCACCAC----------------------------------------------------G----CCATTAACAAAGC------TC------------TGCTCACCACGAA----------------------------CGCACACACTCACACA--ATC-TATC--CAT-GCA----TGTGTATTTT-TGT------TTGTATG--------TA--------------TGCAGACGTGTGTGACAGTGTTGCCAGGCTGA
droVir3 scaffold_13047:580987-581304 + GCGTTTTTGTT--TAAAATGCTTAGCAATTTG--CAATA---ACTACAAATAGT------------------ACAA--------GA-AAGTAAGT-GCATAACTTAAGCA-TTTCTGATGAAA-A-------------------------------AAATTGTTTAATTTTC-----------GCCTACGTTGTCGTACCACTCACACGCGCTT-ATTCACCACAATTAACAGCTAA---ATTTCAACATGAGCGCAGTACTGAGCTCACCACTAGT----CGACCG----------------------------------------------TATTCATGCCCTCTCACTC----TCACGCGCGCACACA--AGCGTGTC--CGTAGAA----TGTGTGATTG-TGT------TTGCGTGTGTCATTATATGCAATGTCAT-----AGAACAGACGTTGCCATGTCGCGTAAA--A
droMoj3 scaffold_6540:4558699-4559018 + GCGTTTTTGTT--TTAAAT---GCTTAA---C--CACTT---GCAATAAATTGAAATTA-----------CTACAAGAAGCTTTCA-AAGTAAGT-GCATAACTTAAGCG-TTTCTGATGAAA-A--------------------------------AATTATTAAATTTT-----------CGCCTACGTCGTCGTGACACTCTCTCGCGCTT-ATTCACCACCATTAACAGCTAA---ATTTCAACATGAGCGCAGCATTGAGCTCACCACT---------------CATACTTA------------------------------------------TTCTCTCTCGCTCTTTCACACGCGCTCACACAAGAGTATC----CAT-CCA----TGTGAGATTG-TGTGTGTG------C----CTTTATATGCAATGTCAT-----AGAACAGACGTTGCCATGTCGCGTAAAACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAGTTTTTGAA--TCAAGC-CTGTGTAATTTC--CACCC---ACAACGAATTGA------------------------------AA-AAGTAAGT-GAAT---TC----------AAACGAGA-A-A---------------AAG---AAAATTATAAATTATTTCATTTTC-CTCTTCGGTCGCCTACGTTG------------------CTT-ACTCACCAC-------------------------------------------------TAGT----CGATTCCCCACGCTCTCTCTC------------TCTTCACCACAGT------------------------------CACCAATACACACG--GGCTCGCCTACGTCACT----TTGTCGTGTG-TGTGTGTG--------------------------------CTTAGACTAGCGTTGCCATGTCGCGCGAATTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................TAAGT-GAAT---TC----------AAACGAG...................................................................................................................................................................................................................................................................................................................................................................1811.00100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................CACCAATACACACG--GGCTCGCCTACGTC..........................................................................................2811.00100000000000100000
...................................................................................................................................................................................................................................................................................................................................CAGT------------------------------CACCAATACACACG--GGC.....................................................................................................2111.00100100000000000000
...TTTTTGAA--TCAAGC-CTGTGTAATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000010000000
.....TTTGAA--TCAAGC-CTGTGTAATTTC--CACCC---A..................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000000000
....................CTGTGTAATTTC--CACCC---ACAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000100000000000
..............CAAGC-CTGTGTAATTTC--C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
..............CAAGC-CTGTGTAATTTC--CACCC---ACAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
........................GTAATTTC--CACCC---ACAACGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
.....................................CC---ACAACGAATTGA------------------------------AA-AA....................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000010000000000
.....TTTGAA--TCAAGC-CTGTGTAATTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TTGTCGTGTG-TGTGTGTG--------------------------------CTTAGACT........................2611.00100100000000000000
....TTTTGAA--TCAAGC-CTGTGTAATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000000000
..............CAAGC-CTGTGTAATTTC--CACCC---...................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001000000000000
....TTTTGAA--TCAAGC-CTGTGTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
droSec2
AAGTTTTTGAA--TCAAGC-CTGTGTAATTTC--CACCC---ACAACGAATTGA------------------------------AA-AAGTAAGT-GAAT---TC----------AAACGAGA-A-A---------------AAG---AAAATTATAAATTATTTCATTTTC-CTCTTCGGTCGCCTACGTTG------------------CTT-ACTCACCAC-------------------------------------------------TAGT----CGATTCCCCACGCTCTCTCTC------------TCTTCACCACAGT------------------------------CACCAATACACACG--GGCTCGCCTACGTCACT----TTGTCGTGTGT-GT--GTG--------------------------------CTTAGACTAGCGTTGCCATGTCGCGCGAATTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................GAAT---TC----------AAACGAGA-A-A---------------AAG---A........................................................................................................................................................................................................................................................................................................................................2011.0010010
AAGTTTTTGAA--TCAAGC-CTGTGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
....TTTTGAA--TCAAGC-CTGTGTAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................ACT----TTGTCGTGTGT-GT--GTG--------------------------------CTTAGA..........................2511.0010010
.....TTTGAA--TCAAGC-CTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.................................................................................................................................................................................................................................................................................................................................CACAGT------------------------------CACCAATACACACG--GGCTC...................................................................................................2511.0010010
....................................................................................................................................................................................................................................................................................................................................AGT------------------------------CACCAATACACACG--GGCT....................................................................................................2111.0010100
.AGTTTTTGAA--TCAAGC-CTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
..............CAAGC-CTGTGTAATTTC--CACCC---AC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
..........................AATTTC--CACCC---ACAACGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
dm3
AAGTTTTTGAT--TCAAGC-CTGTGTAATTTC--CACCC---ACAACGAATTGA------------------------------AA-AAGTAAGT-GAAT---TC----------AAATGAGA-A-A---------------AAG---AAAATTATAATTTATTTCATTTTC-CTCTTCGCTCGCCTACGTTG------------------CTT-ACTCACCAC-------------------------------------------------TAGT----CGATTCCCCACGCTCTCTCTC------------TCTTCACCACAGT------------------------------CACCAATACACACG--GGCTCGCCTACGTCACT----TTGTCGTGTGT-G----TG--------------------------------CTTAGACTAGCGTTGCCATGTCGCGCGAATTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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................AGC-CTGTGTAATTTC--CACCC---...................................................................................................................................................................................................................................................................................................................................................................................................................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AAGTTTTTGAT--TCAAGC-CTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000
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..................................CACCC---ACAACGAATTGA------------------------------AA-AAC...................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000001000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TACGTCACT----TTGTCGTGTGT-G----TG--------------------------------C...............................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
................AGC-CTGTGTAATTTC--CACCC---A..................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....TTTTGAT--TCAAGC-CTGTGTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000
..GTTTTTGAT--TCAAGC-CTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000001000000000000000000000000001000000000000
................................................................................................................................................................................................................................................................................................................................................................................................GTCACT----TTGTCGTGTGT-G----..................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000000000000000000000000001000
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...............AAGC-CTGTGTAATTTC--CACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..........................................................................................................................................................................TC-CTCTTCGCTCGCCTACGTTG------------------CT........................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TTGTCGTGTGT-G----TG--------------------------------CTTAGACTAGCGT...................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
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...............................................................................................................................................................................................................................................................................................................................................................................................CGTCACT----TTGTCGTGTGT-G----TG--------------------------------C...............................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.....TTTGAT--TCAAGC-CTGTGTAATTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
AAGTTTTTGAT--TCAAGC-CTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TCAAGC-CTGTGTAATTTC--CACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.......TGAT--TCAAGC-CTGTGTAATTTC--C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TGAT--TCAAGC-CTGTGTAATTTC--CACCC---A..................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................ACT----TTGTCGTGTGT-G----TG--------------------------------CTT.............................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000
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...................................................................................................................................................................................................................................................................................................................................................................................................................GT-G----TG--------------------------------CTTAGACTAGCGTTGC................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.AGTTTTTGAT--TCAAGC-CT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
.......................TGTAATTTC--CACCC---ACAACGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................CACT----TTGTCGTGTGT-G----T.................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TCAAGC-CTGTGTAATTTC--CACCC---A..................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................C--CACCC---ACAACGAATTGA------------------------------AA-G.....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
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...................................................................................................................................................................................................................CTT-ACTCACCAC-------------------------------------------------TAGT----CGATT...............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................CACT----TTGTCGTGTGT-G----TG--------------------------------CT..............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGCCATGTCGCGCGAA...1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...TTTTTGAT--TCAAGC-CTGTGTAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TCACCACAGT------------------------------CACCAATACACACG--GGC.....................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..........T--TCAAGC-CTGTGTAATTTC--CACCC---ACA................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
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.................................................................................................................................................................................................................................................................................................................................................................................CG--GGCTCGCCTACGTCACT----T..................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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....................................CCC---ACAACGAATTGA------------------------------AA-A.....................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................G------------------CTT-ACTCACCAC-------------------------------------------------TAGT----CG..................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CTGTGTAATTTC--CACCC---ACAACGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AAGC-CTGTGTAATTTC--CACCC---ACAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGACTAGCGTTGCCATGTCGCGCG.....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................T-ACTCACCAC-------------------------------------------------TAGT----CGATTCCCCACGC.......................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...................................................................................................................................................................................................................................................................................................................................................................................................ACT----TTGTCGTGTGT-G----TG--------------------------------CTTAGAC.........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCGTTGCCATGTCG.........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
................AGC-CTGTGTAATTTC--CACCC---ACAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TTGAT--TCAAGC-CTGTGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................G----TG--------------------------------CTTAGACTAGCGTTGCCATG............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTGTGT-G----TG--------------------------------CTTAGACT........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TC--CACCC---ACAACGAATTGA------------------------------AA-......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................ACCC---ACAACGAATTGA------------------------------AA-A.....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................GTCACT----TTGTCGTGTGT-G----TG--------------------------------CA..............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.........AT--TCAAGC-CTGTGTAATTTC--CACCC---A..................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................CACAGT------------------------------CACCAATACACACG--G.......................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................CTCTCTCTC------------TCTTCACCACAGT------------------------------C.......................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................T----TTGTCGTGTGT-G----TG--------------------------------CTTAG...........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
...................................................................................................................................................................TTCATTTTC-CTCTTCGCTCGCCTA.................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................AACGAATTGA------------------------------AA-AAGTAAGT-G............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................ATTTTC-CTCTTCGCTCGCCTAC................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TTGAT--TCAAGC-CTGTGTAATTTA--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................ACGTCACT----TTGTCGTGTGT-.......................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................ACT----TTGTCGTGTGT-G----TG--------------------------------CT..............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..............CAAGC-CTGTGTAATTTC--CACCC---...................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TACACACG--GGCTCGCCTACGTCACT----...................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................AATTTC--CACCC---ACAACGAATTGA------------------------------A........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TGA------------------------------AA-AAGTAAGT-GAAT---TC----------AAAA......................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGACTAGCGTTGCCATGT...........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TTTTC-CTCTTCGCTCGCCTACG...............................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TCACT----TTGTCGTGTGT-G----TG--------------------------------CT..............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................AGC-CTGTGTAATTTC--CACCC---AC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................AATTATAATTTATTTCATTTTC-................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TGTGT-G----TG--------------------------------CTTAGACTAGCGTTGCCA..............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................AC-------------------------------------------------TAGT----CGATTCCCCACGCTC.....................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.AGTTTTTGAT--TCAAGC-CTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........T--TCAAGC-CTGTGTAATTTC--CACCC---ACAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGACTAGCGTTGCCATGT...........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.AGTTTTTGAT--TCAAGC-CTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TCAAGC-CTGTGTAATTTC--CAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................C--CACCC---ACAACGAATTGA------------------------------AA-......................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TTC--CACCC---ACAACGAATTGA------------------------------AA-......................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AT--TCAAGC-CTGTGTAATTTC--CACCC---...................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..............................TC--CACCC---ACAACGAATTGA------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AT--TCAAGC-CTGTGTAATTTC--C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TCGCCTACGTCACT----TTGTCGT............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................ACG--GGCTCGCCTACGTCACT----T..................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
......TTGAT--TCAAGC-CTGTGTAATTTC--CACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AATTTC--CACCC---ACAACGAATTGA------------------------------AA-A.....................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................ACCACAGT------------------------------CACCAATACACACG--GGCTCG..................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................C---ACAACGAATTGA------------------------------AA-AAC...................................................................................................................................................................................................................................................................................................................................................................................................1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................GTCACT----TTGTCGTGTGT-G----TG--------------------------------CTTAGACT........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............TCAAGC-CTGTGTAATTTC--CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................T----TTGTCGTGTGT-G----TG--------------------------------CTT.............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTGTGT-G----TG--------------------------------CTTAGA..........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................CACCAATACACACG--GGCT....................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................CTACGTCACT----TTGTCGTGTGT-G----TG--------------------------------C...............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............AAGC-CTGTGTAATTTC--CACCC---ACAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................CAACGAATTGA------------------------------AA-AAGTAAGT-.............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................GTGTGT-G----TG--------------------------------CTTAGACTAGCGTT..................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..GTTTTTGAT--TCAAGC-CTGTGTAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........AT--TCAAGC-CTGTGTAATTTC--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............CAAGC-CTGTGTAATTTC--CAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TAGT----CGATTCCCCACGCTCTC...................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................GTGTGT-G----TG--------------------------------CTTAGACTAGCGT...................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....................................................A------------------------------AA-AAGTAAGT-GAAT---TC----------AAAT......................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................GTCACT----TTGTCGTGTGT-G----TG--------------------------------CTTA............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................TTATTTCATTTTC-CTCTTCGCT.......................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................CAATACACACG--GGCTCGCCT...............................................................................................2011.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AGTTTTTGAT--TCAAGC-CTGTGTAATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TTC--CACCC---ACAACGAATTGA------------------------------AA-AAC...................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TGAT--TCAAGC-CTGTGTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGACTAGCGTTGCCATG............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TTTGAT--TCAAGC-CTGTGTAATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................TTCGCTCGCCTACGTTG------------------CTT-ACTC..................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CC---ACAACGAATTGA------------------------------AA-AA....................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TGT-G----TG--------------------------------CTTAGACTAGCGTTGCCATG............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................GTGT-G----TG--------------------------------CTTAGACTAGCGTT..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.......TGAT--TCAAGC-CTGTGTAATTTC--CACCC---...................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TGT-G----TG--------------------------------CTTAGACTAGCGTTG.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TTTC--CACCC---ACAACGAATTGA------------------------------AA-AAC...................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TTTGAT--TCAAGC-CTGTGTAATTTC--C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGACTAGCGTTGCCATGTCGCGC......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...........................ATTTC--CACCC---ACAACGAATTGA------------------------------AA-A.....................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................CCACGCTCTCTCTC------------TCTTCA.............................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................GTTG------------------CTT-ACTCACCAC-------------------------------------------------TAGT----CGAT................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..GTTTTTGAT--TCAAGC-CTGTGTAATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AAGTTTTTGTT--TCATGC-CTGTGTAATTTC--CACCC---ACAACGAATTGA------------------------------AA-AAGTAAGT-GAAT---TC----------AAACGAGA-AAA---------------AAG---AAAATTATAAATTATTTCATTTTC-CTCTTCGCTCGCCTACGTTG------------------GTT-ACTCACCAC-------------------------------------------------TAGT----CGATTCCCCACGCT----CTC------------TCTTCACCACAGT------------------------------CACCAA-ACACACG--GGCTCGCCTACGTCACT----TGTGCGTGTGT-GT--GT----------------------------------TTAGACTAGCGTTGCCATGTCGCGCGAATTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....TTTGTT--TCATGC-CTGTGTAATTTC--C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
.....................................................................................................................................................................................................................................................................................................................................GT------------------------------CACCAA-ACACACG--GGCTCGCCT...............................................................................................2411.0011000000
...................................................................................................................................................................................................................................................................................GT----CGATTCCCCACGCT----CTC------------TCT................................................................................................................................................................2211.0010100000
..........T--TCATGC-CTGTGTAATTTC--CACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
..GTTTTTGTT--TCATGC-CTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
......TTGTT--TCATGC-CTGTGTAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
..........T--TCATGC-CTGTGTAATTTC--CAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.....TTTGTT--TCATGC-CTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000010
droYak3
AAGTTTTTGTT--TCAAGC-CTGTGTAATTTC--CACCC---ACAACGAATTGG------------------------------AA-AAGTAAGT-GAAT---TC----------AAACGAGA-AAA---------------AAG---AAAATTATAAATTATTTCATTTTC-CTCTTCGCTCGCCTACGTTG------------------CTT-ACCCACCAC-------------------------------------------------TAGT----CGATTCCCCACGTTCT--CTC------------TCTTCACCACAGA------------------------------CACCAATACACACG--GGCTCGCCTACGTCACT----TGTGCGTGTGT-GT--GTG--------------------------------CTTAGACTAGCGTTGCCATGTCGCGCGAATCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................GTAATTTC--CACCC---ACAACGAATTGG------------------------------A........................................................................................................................................................................................................................................................................................................................................................................................................2614.00404000000000
...........................................................................................................................................................................C-CTCTTCGCTCGCCTACGT..............................................................................................................................................................................................................................................................................................1911.00100100000000
......................GTGTAATTTC--CACCC---ACAACGAATTGG------------------------------A........................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
..........................AATTTC--CACCC---ACAACGAATTG........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GT-GT--GTG--------------------------------CTTAGACTAGC.....................1811.00101000000000
......TTGTT--TCAAGC-CTGTGTAATTTC--C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................TCGCCTACGTCACT----TGTGCGT............................................................................2111.00100000010000
..........T--TCAAGC-CTGTGTAATTTC--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000
...............................C--CACCC---ACAACGAATTGG------------------------------A........................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000
.......TGTT--TCAAGC-CTGTGTAATTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..........................................................................................................................................................................................................................................................................................GATTCCCCACGTTCT--CTC------------TCTT...............................................................................................................................................................2211.00101000000000
................AGC-CTGTGTAATTTC--CACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................TACGTCACT----TGTGCGTGTGT-GT--GT.................................................................2411.00100000010000
........GTT--TCAAGC-CTGTGTAATTTC--CACCC---AC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
.................................................................................................................................................................ATTTCATTTTC-CTCTTCGCTCGC....................................................................................................................................................................................................................................................................................................2311.00101000000000
........................GTAATTTC--CACCC---ACAACGAATTG........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................GTGT-GT--GTG--------------------------------CTTAGACTAGC.....................2011.00100000010000
droEug1
AAGTTTTTGTT--TCAAGC-CTGTGTAATTTC--CAGCCCGAAAAACGAATTGG-------------------AAA--------AA-AAGTAAGT-GAAT---TT----------AAACGAGA-A------------------AG---AAAATTATAAATTATTTCGTTTTC-CTCTTCGATGGCCTACGTTG------------------CTA-ACTCACCAC-------------------------------------------------TAGT----CGATTCCCCACGCTCTCTCTC------------TCTTCACCACAGT------------------------------CACCAATACACACG--GCTATGCCTACGTCACA----TGTGCGTGTG-TATGTGTGTTTGTGAG--------TT-----------TAG--TCGACTAGCGTTGCCATGTCGCGCGGAATASizeHit CountTotal NormTotal
No Reads
droBia1
AAGTTTTTGTT--TCAAGT-CTGTGTAATTTC--CAGCT---ACAACGAATTGG------------------------------AAGAAGTAAGT-GAAC---TC----------AAACGAGA-AAAAAATAACGAAAAACGAAG---AAAATTATAAATTATTTCATTTTC-CTCTTCGCTCGCCTAAGTTG------------------CTTAACTCACCAC-------------------------------------------------TGGT----CGATTCCCCACGCTCTCTCTCTCTCTGTCCGTCTCTTCACCTCAGG------------------------------CACCAATACACACG--GGCCTGCCTACGTCACA----TGTGCGTGTGT-GT--GTG-----------------------------------CGCCTAGCGTTGCCATGTCGCGAAATTCGSizeHit CountTotal NormTotal
No Reads
droTak1
AAGTTTTTGTT--TCAAGC-CTGTGTAATTTT--CACCC---AAAACGAATTGG--------------------AA--------AA-AAGTAAGT-GAAT---AC----------GAACGAGA-AAAAA----A-----ACGAAG---AAAATTATAAATTATTTCATTTTC-CTCTTCGCTCGCCTACGTTG------------------CTTAACTCACCAC-------------------------------------------------CAGT----CGATTCCCCACGCTCTCTCTC------------TCTTCACCACAGG------------------------------CACCAATACACACG--GGCATGCCTACGTCACA----TGTGCGTGTG-TATGTGTG-----------------------------------CGACTAGCGTTGCCATGTCGC--GAAATASizeHit CountTotal NormTotal
No Reads
droEle1
GAGTTTTTGTT--TCAAGC-CAGTGTAATTTC--TACCC---AAAACGAATTGG------------------------------AA-AAGTAAGT-GAAT---TC----------GAACGAGA-AAAAA-------------AAG---AAAATTATAAATTATTTCATTTTC-CTCTTCGCTCGCCTACGTTG------------------CTT-ACTCACCAC-------------------------------------------------TAGT----CGATTCCCCACGCT----CTC------------TCTTCACCACAGG------------------------------CACCAATACACACG--GGCATGCCTACGTCACA----TTTGCGTGTGT-GT----G-----------------------------------GGACTAGCGTTGCCATGTCGCGCTAAATGSizeHit CountTotal NormTotal
No Reads
droRho1
GAGTT-TTGTT--TCAAGC-CTGTGTAATTTC--TTCCC---AAAACGAATTGG------------------------------AA-AAGTAAGT-GAAT---TC----------GAACGAGA-AAAA--------------AAG---AAAATTATAAATTATTTCGTTTTC-CTCTTCGCTCGCCTACGTTG------------------CTT-ACTCACCAC-------------------------------------------------TAGT----CGATTCCCCACGCTCT--CTC------------TCTTCACCTCAGG------------------------------CACAAATACACACA--AGCATGCCTACGTCACA----TGTGCGTGTG-TGTGTGTG-----------------------------------CGACTAGCGTTGCCATGTCGCGCGAAATASizeHit CountTotal NormTotal
No Reads
droFic1
GAGTTTTTGTT--TCAAGC-CTGTGTAATTTCTCCACCC---AAATCGAATTGA------------------------------AA-AAGTAAGT-GAAT---TC----------GAACAAGA-AAA---------------AAG---AAAATTATAAATTATTTCATTTTC-CTCTTCGCTCGCCTACGTTG------------------CTT-ACTCACCAT-------------------------------------------------TAGT----CGATTCCCCACGGTTT--CTC------------TCTTCACCACAGA------------------------------CACAAATACACACA--GGCATGC-TACGTCACA----TGTGCGTATG-TGTGTGTG------T-------------------------CTGCGACTAGCGTTGCCATGTCGCGCGAAGTASizeHit CountTotal NormTotal
No Reads
droKik1
GAGTTTTTGTT--TCAAGC-CTGTGTAATTTC--CAC-----GAAACGGATTGG------------------------------AA-AAGTAAGT-GAAT---TC----------AATCGAGA-AAA---------------AAG---AAAATTATAAATTATTTCATTTTC-CTCTTCGCTCGCCTACGTTG------------------CGA-TTTCACCAC-------------------------------------------------CA-T----CAATTCCCCACGGTCACACTC------------TCTTCACCACAGC----------------------------CACACCAATACACACG--AGCGAGCCTACGTCACA----TGTGCGTGAGT-GT--GTGTATG--T---------------------------CTGGCTAGCGTTGCCATGTCGCGCGAAATASizeHit CountTotal NormTotal
No Reads
droAna3
GAGTTTTTGTT--TCAAAC-TCGTAAAATTCT--CATCA----GAA-AAACTG-------------------------------AA-AAGTAAGTCGAAT---TA----------TGACAAAA-AAAAAAAAAATAAAATT-GTGGAAAAAAAAATAAATTATTTCATTTTC-CCCTTC----GCCTACGTTG------------------CCT-TTTCACCAC-------------------------------------------------AA-TATTGCAACTCCCCACGGTCG----C------------TCTCCACCACGAC-----------------------------ACACCAATACACACA---GCATGCCTACGTCACA----TGTGCGCTCG-TGTGTGTG-----------------------------------TCGCGAGCGTTGCCATGTCGCGCGAAGTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....TTTGTT--TCAAAC-TCGTAAAATTCT--CATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
............................................................................................................................................................................................................................................................................................................................................................................ACACACA---GCATGCCTACGTCACA----...................................................................................2311.001100000
..........................................................................................................................................................ATAAATTATTTCATTTTC-CCCTTC----GCCTA.................................................................................................................................................................................................................................................................................................2911.001100000
..GTTTTTGTT--TCAAAC-TCGTAAAATTCT--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
........GTT--TCAAAC-TCGTAAAATTCT--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
................................................AACTG-------------------------------AA-AAGTAAGTCGAAT---TA----------TGAC......................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.................................................................................................................................................................ATTTCATTTTC-CCCTTC----GCCTACGT..............................................................................................................................................................................................................................................................................................2511.001010000
...........................................................................................................................................................................................................................................................................................................................CTCCACCACGAC-----------------------------ACACCAATACACACA---.......................................................................................................2711.001100000
.............................................................................................................................................................AATTATTTCATTTTC-CCCC............................................................................................................................................................................................................................................................................................................1940.251010000
droBip1
GAGTTTTTCTT--TAAAAC-TCATAAAATTTT--TATGA----GA--AAAACGG------------------------------AA-AAGTAAGT-GAAT---T-------------ATGAAA-AAAAA----------TT-GAG---GAAAAAATAAATTATTTCATTTTC-CCCTTC----GCCTACGTTG------------------CCT-TTTCACCAC-------------------------------------------------ATTG----CAACTCCCCACGGTCG----C------------TCTCCACCACGG-------------------------------CACCAATACACACA---GCATGCCTACGTCACA----TGTGCGTGTGTGGT----GTTTG------------------------------CTCGCGAGCGTTGCCATGTCGCGCAAAGTASizeHit CountTotal NormTotal
No Reads
dp5
GAGTTTTTGTTTTTCAAAT-TTGTGCAAATAC--CACAA---AAGTCGAAATA-----------------TTAAAA--------AA-AAGTAAGT-GC-----TG----------CAGCGAAGAA-A---------------AAG---AAAATT---TATTATTTCATTTTGTCTCT-------GTAAAAATG------------------CTT-ATTCACCACCATTAACAGCTAAAAAAT------------------------------------------TTCAACATGAATGTTCTC------------TGCTCACCACGGCAGACGTTATACA----------------CACATGCACACACACAATGGCAGACATACGTCACTCTGTT--GGGTGTG-TGTGTGTGTATG-------------------------GGA--CAGGCGAGCGTTGCCATGTCGCGCGAAACASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................AGTAAGT-GC-----TG----------CAGCGAAGAA-...............................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................AAGTAAGT-GC-----TG----------CAGCGAAGA.................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................GTGCAAATAC--CACAA---AAGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........................................................................AAAA--------AA-AAGTAAGT-GC-----TG----------CAGC......................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
.......................................................................................................................................................................................................................................................................................................................................................................TGCACACACACAATGGCAGACATACG............................................................................................2611.0010100000000
.....................TGTGCAAATAC--CACAA---AAGTCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
droPer2
GAGTTTTTGTTTTTCAAAT-TTGTGCAAATAC--CACAA---AAGTCGAAATA-----------------TTAAAA--------AA-AAGTAAGT-GC-----TG----------CAGCGAAGAA-A---------------AAG---AAAATT---TATTATTTCATTTTGTCTCT-------GTAAAAATG------------------CTT-ATTCACCACCATTAACAGCTAAAAAAT------------------------------------------TTCAACATGAATGTTCTC------------TGCTCACCACGGCAGACGTTATACA----------------CACATGCACACACACAATGGCAGACATACGTCACTCTGTT--GGGTGTGT-GT----GTTTGTGTA--------TG-----------GGA--CAGGCGAGCGTTGCCATGTCGCGCGAAACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............AAAT-TTGTGCAAATAC--CACAA---AAGTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................TCACTCTGTT--GGGTGTGT-GT----G................................................................2111.001000001
.................................................................................................................................................................ATTTCATTTTGTCTCT-------GTAA.................................................................................................................................................................................................................................................................................................2011.001100000
............................................GTCGAAATA-----------------TTAAAA--------AA-AAT...................................................................................................................................................................................................................................................................................................................................................................................................20120.081100000
droWil2
CAC-------------------------------CGCAC-AAAAAGAGAAAAA----TACAAATTGTTTAACAAAA--------AA-AAGTAAGT-TAAA--TTAAAGTGATATTTAATGAAA-AAAAAAAAAAGAG-----AAG-TAAAAATTATAAATTATTTCTTTCT--CGCTTCGTT----------------------------------TTCACCAC----------------------------------------------------G----CCATTAACAAAGC------TC------------TGCTCACCACGAA----------------------------CGCACACACTCACACA--ATC-TATC--CAT-GCA----TGTGTATTTT-TGT------TTGTATG--------TA--------------TGCAGACGTGTGTGACAGTGTTGCCAGGCTGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------TGCAGACGTGTGTGACAGT.............2012.00210010
.....................................................................................................................................................................................................................................................................................................................................................................................ATC-TATC--CAT-GCA----TGTGTATT...........................................................................2111.00100100
..................................................AAA----TACAAATTGTTTAACAAAA--------AA-......................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................G--------TA--------------TGCAGACGTGTGTGACA...............2011.00110000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACGTGTGTGACAGTGT...........2011.00100100
..............................................................................................................................................................................................................................................................................................AACAAAGC------TC------------TGCTCACCACGAA----------------------------C.........................................................................................................................2411.00100100
.....................................AC-AAAAAGAGAAAAA----TACAAATT............................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................GT------TTGTATG--------TA--------------TGCAGACGT.......................2011.00100001
........................................................................................................................AAA-AAAAAAAAAAGAG-----AA.............................................................................................................................................................................................................................................................................................................................................18200.05100100
droVir3
GCGTTTTTGTT--TAAAATGCTTAGCAATTTG--CAATA---ACTACAAATAGT------------------ACAA--------GA-AAGTAAGT-GCATAACTTAAGCA-TTTCTGATGAAA-A-------------------------------AAATTGTTTAATTTTC-----------GCCTACGTTGTCGTACCACTCACACGCGCTT-ATTCACCACAATTAACAGCTAA---ATTTCAACATGAGCGCAGTACTGAGCTCACCACTAGT----CGACCG----------------------------------------------TATTCATGCCCTCTCACTC----TCACGCGCGCACACA--AGCGTGTC--CGTAGAA----TGTGTGATTG-TGT------TTGCGTGTGTCATTATATGCAATGTCAT-----AGAACAGACGTTGCCATGTCGCGTAAA--ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................TG--CAATA---ACTACAAATAGT------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................1913.003001000000000010000000000001000000000000000000000000000000000000
.....................................TA---ACTACAAATAGT------------------ACAA--------GA-AAGTT.................................................................................................................................................................................................................................................................................................................................................................................................2512.002000000000000000001000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................CACCACTAGT----CGACCG----------------------------------------------TATT............................................................................................................................................2012.002020000000000000000000000000000000000000000000000000000000000000
..GTTTTTGTT--TAAAATGCTTAGCAATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002000000000000000200000000000000000000000000000000000000000000000
......................................A---ACTACAAATAGT------------------ACAA--------GA-AAGT..................................................................................................................................................................................................................................................................................................................................................................................................2312.002000000000000011000000000000000000000000000000000000000000000000
........................................................................................................TAAGCA-TTTCTGATGAAA-A-------------------------------A................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
.................ATGCTTAGCAATTTG--CAATA---AC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
......TTGTT--TAAAATGCTTAGCAATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................GTTTAATTTTC-----------GCCTACGTTGT...........................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.....TTTGTT--TAAAATGCTTAGCAATTTG--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................T-ATTCACCACAATTAACAGCT..................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................................................................................................................................................CTCACCACTAGT----CGACCG----------------------------------------------T...............................................................................................................................................1911.001010000000000000000000000000000000000000000000000000000000000000
...............................G--CAATA---ACTACAAATAGT------------------ACA..................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................CCTACGTTGTCGTACCACTCCA...............................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000100000000000000000000000000000000
...................................................................................................................................................................TTAATTTTC-----------GCCTACGTTGTC..........................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.................ATGCTTAGCAATTTG--CAATA---ACTACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCAATGTCAT-----AGAACAGAC.....................2211.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................AA---ATTTCAACATGAGCGCAGTACTGA.....................................................................................................................................................................................................................2611.001000000000000000000000000000000000010000000000000000000000000000
.............................................ACAAATAGT------------------ACAA--------GA-AAGT..................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..............................................CAAATAGT------------------ACAA--------GA-AAGT..................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................CTCACCACTAGT----CGACCG----------------------------------------------TA..............................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
...........................ATTTG--CAATA---ACTACAAATAGT------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000010000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................TTCAACATGAGCGCAGTAAAA......................................................................................................................................................................................................................2170.141000000000000000000000000000000000000000000000000000000000000001
droMoj3
GCGTTTTTGTT--TTAAAT---GCTTAA---C--CACTT---GCAATAAATTGAAATTA-----------CTACAAGAAGCTTTCA-AAGTAAGT-GCATAACTTAAGCG-TTTCTGATGAAA-A--------------------------------AATTATTAAATTTT-----------CGCCTACGTCGTCGTGACACTCTCTCGCGCTT-ATTCACCACCATTAACAGCTAA---ATTTCAACATGAGCGCAGCATTGAGCTCACCACT---------------CATACTTA------------------------------------------TTCTCTCTCGCTCTTTCACACGCGCTCACACAAGAGTATC----CAT-CCA----TGTGAGATTG-TGTGTGTG------C----CTTTATATGCAATGTCAT-----AGAACAGACGTTGCCATGTCGCGTAAAACASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................ATTGAAATTA-----------CTACAAGAAGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
..GTTTTTGTT--TTAAAT---GCTTAA---C--C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
....................................................GAAATTA-----------CTACAAGAAGCTTTC........................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
......................................................AATTA-----------CTACAAGAAGCTTTCA-AAA...................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
............................................................................................................................................................................................................................................................GCGCAGCATTGAGCTCACCACT---------------............................................................................................................................................................................................2211.001100000
.............................................ATAAATTGAAATTA-----------CTACAAGAAGCTTTC........................................................................................................................................................................................................................................................................................................................................................................................................2911.001000001
.............TTAAAT---GCTTAA---C--CACTT---GCA................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..........T--TTAAAT---GCTTAA---C--CACTT---GCA................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...............................................AAATTGAAATTA-----------CTACAAGAAGCT...........................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001

Generated: 05/18/2015 at 08:23 PM