ID:

dsi_27685

 Coordinate:

3l:7253287-7253436 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_7252559_7253286_+]; exon [3l_7252148_7253286_+]; intron [3l_7253287_7253928_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCACTACACTCGTATGGAAACTATTTTCTGTTACCATGGGGTTATACCAGGTACGTTTGTTATCATTTATAATTTTTAATGGCCATCATTGATGGTAACTGTTTAATAGAAAAGTATTTTGTCTTTAAGTGACCACTGAGATCGCAGATAATTATTAAGATAGCTAATATATTTATCTACTTGATTGCCAAATTAAAGAAATCGGAAGGTATGGCAAGAATGAGTTGCTCCTTTGGGTTATCAGTATGTT
**************************************************...............(((.(((((.....((((.((((.....(((((.((((...((....((((..((((((....((((.........)))))))))).))))....))...))))...)))))....)))).)))))))))..)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
.....ACACTCGTATGGAAACTATTTTCTG............................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................AAGGTACGGCAAGAA.............................. 15 1 5 0.40 2 0 2 0 0 0
.......................................................................................................................................CTGAGATCGCAGAAAATG................................................................................................. 18 2 7 0.14 1 0 0 1 0 0
..........................................................................................GATGGTAAGTGTTTA................................................................................................................................................. 15 1 15 0.07 1 0 0 0 1 0
.....ACACTCGTATCGAAAG..................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

AGTGATGTGAGCATACCTTTGATAAAAGACAATGGTACCCCAATATGGTCCATGCAAACAATAGTAAATATTAAAAATTACCGGTAGTAACTACCATTGACAAATTATCTTTTCATAAAACAGAAATTCACTGGTGACTCTAGCGTCTATTAATAATTCTATCGATTATATAAATAGATGAACTAACGGTTTAATTTCTTTAGCCTTCCATACCGTTCTTACTCAACGAGGAAACCCAATAGTCATACAA
**************************************************...............(((.(((((.....((((.((((.....(((((.((((...((....((((..((((((....((((.........)))))))))).))))....))...))))...)))))....)))).)))))))))..)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 GSM343915
embryo
...........CGTACCTTTGCTAAAAGAC............................................................................................................................................................................................................................ 19 2 2 1.00 2 2 0
...................................................................................................ACCAATTCTCTTTTCATAAA................................................................................................................................... 20 2 1 1.00 1 0 1

Generated: 04/24/2015 at 02:26 AM