ID:

dsi_27674

 Coordinate:

2r:5773362-5773511 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-13.1 -12.8 -12.8

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
AT_richLow_complexityLow_complexity+
mature
  1. dsi_27674  2r:5773457-5773472 +
  2. 3l:22637487-22637502 -
  3. 3l:22687760-22687775 -
  4. 3l:22753012-22753027 -
  5. 3r:8215281-8215296 -
  6. 3r:10727152-10727167 -
  7. node_27832:2819-2834 -
star

Sense Strand Reads

AGAACACCAGTTTAAAACGAAATTTCCCGCCAATATTCGAATTTATTATGAATTATCGAATTATTTTTAAAAAATGAAAAATTTAAGGTTTTAAAATATATTTTTATTTTTACTTTTAATTTTGAAATCGAAGAAGAAACTACGAAATATATTAATTATTATATAATTATAGTTAAAATTTAATGAAATATTTTTTACAGAAAACCAAGGTTAGACATCTTCTTCAACGGTAGCAACTCCATGAAGAGCA
**************************************************.................(((((((((.((((((.(((((...((((((......)))))).))))).))))))....(((.((......)).)))......((((((((.........))))))))............)))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
......................................................ATCGGATTATTTTTAAAAA................................................................................................................................................................................. 19 1 1 3.00 3 3 0 0 0 0 0 0 0
......................................................ATCGGATTATTTTTAAA................................................................................................................................................................................... 17 1 5 2.20 11 8 3 0 0 0 0 0 0
..........................................................................................................................................................................................................................CTTCTTCAACGGTAGCAACTCCAT........ 24 0 1 2.00 2 0 0 2 0 0 0 0 0
.......................................................TCGGATTATTTTTAAAAAA................................................................................................................................................................................ 19 1 1 2.00 2 2 0 0 0 0 0 0 0
......................................................ATCGGATTATTTTTAAAAAA................................................................................................................................................................................ 20 1 1 2.00 2 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................GAAGACCAAGGTTCGACATGTT............................. 22 3 1 1.00 1 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................TCTTCAACGGTAGCAACTCCATGAAGAGC. 29 0 1 1.00 1 0 0 0 1 0 0 0 0
......................................................ATCGGATTATTTTTAAAA.................................................................................................................................................................................. 18 1 2 1.00 2 1 1 0 0 0 0 0 0
.......................................................TCGGATTATTTTTAAAAA................................................................................................................................................................................. 18 1 2 1.00 2 1 1 0 0 0 0 0 0
.......................................................TCGGATTATTTTTAAAA.................................................................................................................................................................................. 17 1 6 0.67 4 3 1 0 0 0 0 0 0
................................................................................................................................................................................................................................CAACGGTAGCAGATCTATGA...... 20 3 2 0.50 1 0 0 0 1 0 0 0 0
......................................................ATCGGATTATTTTTTAAA.................................................................................................................................................................................. 18 2 20 0.45 9 0 9 0 0 0 0 0 0
.......................................................TCGGATTATTTTTAAA................................................................................................................................................................................... 16 1 17 0.41 7 4 0 0 2 0 0 1 0
.............................................................................................................................................................................................................................CTTCAACGGTGGAACCTCCA......... 20 3 3 0.33 1 0 0 0 0 0 1 0 0
.................................................................................................................................................AATATATTAATTATTA......................................................................................... 16 0 7 0.29 2 0 0 0 0 0 0 2 0
......................................................ATCGGATTATTTTTAAAAAAAAAAA........................................................................................................................................................................... 25 3 4 0.25 1 0 1 0 0 0 0 0 0
......................................................ATCGGATTATTTTTTAAAA................................................................................................................................................................................. 19 2 12 0.25 3 0 2 0 0 0 0 1 0
.......................................................TCGGATTATTTTTTAAAA................................................................................................................................................................................. 18 2 20 0.25 5 5 0 0 0 0 0 0 0
.......................................................TCGGATTATTTTTTAAAAA................................................................................................................................................................................ 19 2 19 0.16 3 3 0 0 0 0 0 0 0
......................................................ATCGGATTATTTTTTAAAAA................................................................................................................................................................................ 20 2 7 0.14 1 0 1 0 0 0 0 0 0
...................................................................................................................................AGAAGAAACAACGAAAT...................................................................................................... 17 1 8 0.13 1 0 0 0 0 0 1 0 0
...............................................................................................................................TTGAAGAAGAAACTATGAAAAA..................................................................................................... 22 3 9 0.11 1 0 0 0 0 0 1 0 0
......................................................ATCGGATTATTTTTAA.................................................................................................................................................................................... 16 1 19 0.11 2 2 0 0 0 0 0 0 0
......................................................ATCGGATTATTTTAAAAAA................................................................................................................................................................................. 19 2 10 0.10 1 0 1 0 0 0 0 0 0
.........................CCCGCCGATATCCGAAT................................................................................................................................................................................................................ 17 2 12 0.08 1 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................CTTTTTACAGACAGCCAAGG........................................ 20 3 12 0.08 1 0 0 0 0 0 0 0 1
.......................................................TCGAATTGTTTTTAAAA.................................................................................................................................................................................. 17 1 13 0.08 1 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................CACGGTTAGGCATCTACT........................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0
......................................................ATCGGATTATTTTTAAAC.................................................................................................................................................................................. 18 2 20 0.05 1 0 1 0 0 0 0 0 0
......................................................ATCGGATTATTTTTA..................................................................................................................................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................GCAACTCGATGAAGA... 15 1 20 0.05 1 0 1 0 0 0 0 0 0
.......................................................TCGGATTATTTTGAAAAA................................................................................................................................................................................. 18 2 20 0.05 1 1 0 0 0 0 0 0 0
......................................................ATCGGATTATTTTAAAAA.................................................................................................................................................................................. 18 2 20 0.05 1 0 1 0 0 0 0 0 0
.......................................................TCGACTTTTTTTTAAAAAA................................................................................................................................................................................ 19 2 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

TCTTGTGGTCAAATTTTGCTTTAAAGGGCGGTTATAAGCTTAAATAATACTTAATAGCTTAATAAAAATTTTTTACTTTTTAAATTCCAAAATTTTATATAAAAATAAAAATGAAAATTAAAACTTTAGCTTCTTCTTTGATGCTTTATATAATTAATAATATATTAATATCAATTTTAAATTACTTTATAAAAAATGTCTTTTGGTTCCAATCTGTAGAAGAAGTTGCCATCGTTGAGGTACTTCTCGT
**************************************************.................(((((((((.((((((.(((((...((((((......)))))).))))).))))))....(((.((......)).)))......((((((((.........))))))))............)))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
 M023
head
.......................................................................................................................................................................................ACTATATAAAAAACGTCTTTAGGTT.......................................... 25 3 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................AAAAAATGTCATTTGGT........................................... 17 1 3 0.33 1 0 0 1 0 0 0
..........................................................................................................................................................................................................................TAAGAAGTTGCCATC................. 15 1 5 0.20 1 0 1 0 0 0 0
.......................................TTCAATAATACTTAGTAG................................................................................................................................................................................................. 18 2 9 0.11 1 0 0 0 1 0 0
...........................................................................................................................................................................................................................AAGTAGTTGCCATCGAT.............. 17 2 12 0.08 1 0 0 0 0 1 0
................................................................................................................................................................................................AAAATGTCGTTTGATTCTAAT..................................... 21 3 14 0.07 1 0 1 0 0 0 0
........................................TCAATAGTACTTAGTAGCT............................................................................................................................................................................................... 19 3 17 0.06 1 0 1 0 0 0 0
................................................................................................................................................................................................AAAATGTCTTTTGTTT.......................................... 16 1 20 0.05 1 1 0 0 0 0 0
........................................TCAATAATACTTAGTAGTTT.............................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 1
...............................................................AAAAATTTTTTACTTCT.......................................................................................................................................................................... 17 1 20 0.05 1 1 0 0 0 0 0
........................................TCAATAATACTTAGTAG................................................................................................................................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0

Generated: 04/23/2015 at 10:00 PM