ID:

dsi_27673

 Coordinate:

3r:19919182-19919331 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.2 -27.0 -27.0

Flybase annnotation

five_prime_UTR [3r_19919082_19919181_-]; exon [3r_19917129_19919181_-]; intron [3r_19919182_19932503_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CACCATCGGAATTGGGCTGAACTTAAAATGCCCCATTGGAAAACCAGTAACTAGTCAATGAGATTGGAAGTGAGAATGCTGGCTACCGCCAAGGTTGTCTGGTCATTATTAAAGTCATAATATATTCGTTTAATGAGCTGCCGTCTCTGCTTTCAATGCAACTGGTCTGATACGCATTCGTTTTTCTTACCTACTTTCAGATACTACAAGATAAAGTCGGGCCTGGGCGCCCATCTAGAGAGGGAGAGGA
**************************************************(((((...((..(((((((((((((.....(((.(((.....))).)))((((..((((((((...............))))))))...)))))))).))))))))).))))))).((((..........................))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR1275487
Male larvae
...............................................................TTAGAAGTGAGAATGCCG......................................................................................................................................................................... 18 2 3 11.67 35 20 4 0 11 0 0 0 0 0 0 0 0
...............................................................TTAGAAGTGAGAATGCCGG........................................................................................................................................................................ 19 2 1 7.00 7 5 2 0 0 0 0 0 0 0 0 0 0
...............................................................TTAGAAGTGAGAATGCCGGT....................................................................................................................................................................... 20 3 4 6.50 26 13 7 0 4 0 0 1 0 0 0 1 0
................................................................TAGAAGTGAGAATGCCGG........................................................................................................................................................................ 18 2 1 5.00 5 3 1 1 0 0 0 0 0 0 0 0 0
.............................................................GCTTAGAAGTGAGAATGCCGG........................................................................................................................................................................ 21 3 1 4.00 4 1 2 0 1 0 0 0 0 0 0 0 0
.............................................................GCTTAGAAGTGAGAATGCCG......................................................................................................................................................................... 20 3 6 2.50 15 10 2 0 2 0 0 1 0 0 0 0 0
..................................................................GAAGTGAGAATGCCGG........................................................................................................................................................................ 16 1 1 2.00 2 0 0 0 0 1 1 0 0 0 0 0 0
...................................................................AAGTGAGAATGCTGAC....................................................................................................................................................................... 16 1 2 1.50 3 0 0 3 0 0 0 0 0 0 0 0 0
..............................................................ATCGGAAGTGAGAATGC........................................................................................................................................................................... 17 1 2 1.50 3 0 0 0 0 2 1 0 0 0 0 0 0
..............................................................CTTAGAAGTGAGAATGCCG......................................................................................................................................................................... 19 3 17 1.35 23 15 1 0 7 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ACAAGATAAAGTCGGGCC........................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................GATAAGATACTACAAGATAAAGTCGGG............................. 27 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................TAGAAGTGAGAATGCTGGT....................................................................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................TCGGAAGTGAGAATGCTG......................................................................................................................................................................... 18 1 2 1.00 2 0 0 0 0 0 2 0 0 0 0 0 0
.............................................................................................................................................................................................................ACAAGATAAAGTCGGGCCTGGGCGC.................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................ACTACAAGATAAAGTCGGGCCT.......................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TTTCAATGCAACTGGTCTGATACGCA.......................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................ATCGGAAGTGAGAATGCTG......................................................................................................................................................................... 19 1 2 1.00 2 0 0 1 0 1 0 0 0 0 0 0 0
....................................................................AGTGAGAATGCTGGCA...................................................................................................................................................................... 16 1 2 1.00 2 0 0 0 0 0 0 2 0 0 0 0 0
...............................................................TTGGAAGTGCGAATGCTG......................................................................................................................................................................... 18 1 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0
...............................................................TCGGAAGTGAGAATGCT.......................................................................................................................................................................... 17 1 2 1.00 2 0 0 1 0 1 0 0 0 0 0 0 0
...............................................................TTAGAAGTGAGAATGCCGGG....................................................................................................................................................................... 20 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTGGAAGTGAGAATTCT.......................................................................................................................................................................... 17 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................ATCGGAAGTGAGAATG............................................................................................................................................................................ 16 1 4 0.75 3 0 0 0 0 2 1 0 0 0 0 0 0
................................................................TAGAAGTGAGAATGCCGGT....................................................................................................................................................................... 19 3 12 0.75 9 4 4 0 0 0 0 1 0 0 0 0 0
.............................................................GCTTAGAAGTGAGAATGC........................................................................................................................................................................... 18 2 4 0.75 3 1 1 0 0 0 0 0 0 0 1 0 0
..................................................................GAAGTGAGAATGCCGGT....................................................................................................................................................................... 17 2 7 0.57 4 0 0 0 0 0 1 2 0 0 0 0 1
...................................................................AAGTGAGAATGCCGG........................................................................................................................................................................ 15 1 7 0.57 4 0 0 0 0 2 0 2 0 0 0 0 0
..............................................................CTTAGAAGTGAGAATGCCGG........................................................................................................................................................................ 20 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................GAAGTGAGAATGCTGAC....................................................................................................................................................................... 17 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................ATCGGAAGTGAGAATGCT.......................................................................................................................................................................... 18 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................TGGAAGTGTGAATGCT.......................................................................................................................................................................... 16 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................TTAGAAGTGAGAATGC........................................................................................................................................................................... 16 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................TCGGAAGTGAGAATGC........................................................................................................................................................................... 16 1 8 0.38 3 0 0 0 0 1 1 1 0 0 0 0 0
................................................................CGGAAGTGAGAATGCTG......................................................................................................................................................................... 17 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................GTGCTTAGAAGTGAGAATGC........................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................GGAAGTGAGAATGCTGA........................................................................................................................................................................ 17 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................GGAATTGAGAATGCTGAC....................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................TGGGTACCGCGAAGGTTGCC....................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................AGTGAGAATGCTGAC....................................................................................................................................................................... 15 1 12 0.25 3 0 0 1 0 1 0 1 0 0 0 0 0
..............................................................CTTAGAAGTGAGAATGCT.......................................................................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................CGGAAGTGAGAATGC........................................................................................................................................................................... 15 1 14 0.21 3 0 0 1 0 0 1 1 0 0 0 0 0
................................................................TGGAAGTGCGAATGCTG......................................................................................................................................................................... 17 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................TTGGAAGTGCGAATGC........................................................................................................................................................................... 16 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................GAAGTGAGAATGCCGGTA...................................................................................................................................................................... 18 3 20 0.20 4 2 1 0 0 0 0 1 0 0 0 0 0
..............................................................ACTGGAAGTCAGAATGCT.......................................................................................................................................................................... 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................ATCGGAAGTGAGAATTCT.......................................................................................................................................................................... 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................GCAAGTGAGAATGCTG......................................................................................................................................................................... 16 1 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................AAGTGAGAATGCTGA........................................................................................................................................................................ 15 1 13 0.15 2 0 0 1 0 1 0 0 0 0 0 0 0
............................................................CGCTTAGAAGTGAGAATGC........................................................................................................................................................................... 19 3 14 0.14 2 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................TCGGAAGTGAGAATG............................................................................................................................................................................ 15 1 14 0.14 2 0 0 0 0 2 0 0 0 0 0 0 0
............................................................CGCTTAGAAGTGAGAATGCT.......................................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................AGTGAGAATGTTGGC....................................................................................................................................................................... 15 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................ATCTGAAGTGAGAATGCT.......................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0
................................................................TAGAAGTGAGAATGCCGGG....................................................................................................................................................................... 19 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................AGAAGTGCGAATGCTGGC....................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................TCGGAAGTGAGAATTCTG......................................................................................................................................................................... 18 2 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................AAGTGAGAATGTCGGCT...................................................................................................................................................................... 17 2 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................GGAAGTTAGAATGCTGA........................................................................................................................................................................ 17 2 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................ATCGGAAGTGAGAAT............................................................................................................................................................................. 15 1 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................ATCGGAAGTGAAAATGCT.......................................................................................................................................................................... 18 2 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................GGAAGCGAGAATGTCGGCT...................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................GCGCTTAGAAGTGAGAAT............................................................................................................................................................................. 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTGGTAGCCTTAACCCGACTTGAATTTTACGGGGTAACCTTTTGGTCATTGATCAGTTACTCTAACCTTCACTCTTACGACCGATGGCGGTTCCAACAGACCAGTAATAATTTCAGTATTATATAAGCAAATTACTCGACGGCAGAGACGAAAGTTACGTTGACCAGACTATGCGTAAGCAAAAAGAATGGATGAAAGTCTATGATGTTCTATTTCAGCCCGGACCCGCGGGTAGATCTCTCCCTCTCCT
**************************************************(((((...((..(((((((((((((.....(((.(((.....))).)))((((..((((((((...............))))))))...)))))))).))))))))).))))))).((((..........................))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M053
female body
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR1275487
Male larvae
.............................CGGGGCAACCTTTAGGTCA.......................................................................................................................................................................................................... 19 2 2 48.00 96 60 26 7 3 0 0 0 0 0 0 0
.............................CGGGGCAACCTTTAGGTCAT......................................................................................................................................................................................................... 20 2 1 16.00 16 7 6 1 1 0 1 0 0 0 0 0
.............................CGGGGCAACCTTTAGGTCATG........................................................................................................................................................................................................ 21 3 4 16.00 64 41 10 11 2 0 0 0 0 0 0 0
.............................CGGGGCAACCTTTAGGTC........................................................................................................................................................................................................... 18 2 5 8.80 44 26 9 5 0 1 0 1 0 0 2 0
...........................TCCGGGGCAACCTTTAGGTCA.......................................................................................................................................................................................................... 21 3 3 3.67 11 0 0 8 0 0 2 0 0 0 0 1
..........................TTCCGGGGCAACCTTTAGGTCA.......................................................................................................................................................................................................... 22 3 2 3.00 6 1 0 4 0 0 0 1 0 0 0 0
.........................TTTCCGGGGCAACCTTTAGGTCA.......................................................................................................................................................................................................... 23 3 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0
.............................CGGGGTAACCTTTAGGTCAT......................................................................................................................................................................................................... 20 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.........................TTTCCGGGGCAACCTTTAGGTCAT......................................................................................................................................................................................................... 24 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................CGGGGTAACCTTTAGGTC........................................................................................................................................................................................................... 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................TCCGGGGCAACCTTTAGGTCAT......................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................TTTCCGGGGCAACCTTTAGGTC........................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.............................CGGGGTAACCTTTAGGTCATG........................................................................................................................................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................CAGGGCAACCTTTAGGTCAT......................................................................................................................................................................................................... 20 3 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0
..............................GGGGCAACCTTTAGGTCA.......................................................................................................................................................................................................... 18 2 8 0.88 7 1 0 5 0 1 0 0 0 0 0 0
.........................TTTCCGGGGCAACCTTTAGGT............................................................................................................................................................................................................ 21 3 3 0.67 2 0 0 1 0 1 0 0 0 0 0 0
..............................GGGGCAACCTTTAGGTCAT......................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
...............................GGGCAACCTTTAGGTCAT......................................................................................................................................................................................................... 18 2 4 0.50 2 0 0 2 0 0 0 0 0 0 0 0
............................CCGGGGTAACCTTTAGGTC........................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..........................TTCCGGGGCAACCTTTAGGTC........................................................................................................................................................................................................... 21 3 4 0.50 2 0 0 0 0 0 0 0 2 0 0 0
...................................................................................ATGGCGGTTTCGAAAGACCAGT................................................................................................................................................. 22 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
............................CCGGGGCAACCTTTAGGTCAT......................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................CAGAGACTAAAGTTACATTGT....................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0
.............................CGGGCCAACCTTTAGGTCAT......................................................................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
.............................CAGGGCAACCTTTAGGTCA.......................................................................................................................................................................................................... 19 3 14 0.14 2 1 0 0 1 0 0 0 0 0 0 0
.............................CGGGGCAACCTTTAGGTTAT......................................................................................................................................................................................................... 20 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................AGACTGGATGAAAGT................................................... 15 1 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0
.........................TTTCCGGGGCAACCTTT................................................................................................................................................................................................................ 17 2 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................AAAGAATGGATGTAA..................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..............................GGGGCAACCTTTAGGTC........................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:19919132-19919381 - dsi_27673 CACCATCG--GAATTGGGCTGAACTTAA-AATGCCC----------------------------------------------CATTGGAAAACCAGTAACTAG--T-------------------CAATGAGATTGGAAG-TGAGAATGCTGGCTACC-----------------------GCCAAGGTTGTCTGGT----CATTA---TTAAAG-----TCATAATATATTCGTTTAATGAGCT--GCC---G--TCTCTGCTTT-CA------ATGCAACTG--G-----TCTGATACGCATTC-----GTTT-TTC---TTACCTACTTTCAGATACTA---C-A-A--GATA------------------AAGTCGGGCCTGG-------GCGCCCA--------------TCT----AGAGAGGGAG-------AGGA-------
droSec2 scaffold_0:20723887-20724136 - CACCATCG--GAATTGGGCTGAACTTAA-AATGCCC----------------------------------------------CATGGGAAAACCAGTAACTAG--T-------------------CAATGAGATTGGAAG-TGAGAATGCTGGCTACC-----------------------GCCAAGGTTGTCTGGT----CATTA---TTAAAG-----TCATAATATATTCGTTTAATGAGCT--GCC---G--TCTCTGCTTT-CA------ATGCAACTG--G-----TCTGATACGCATTC-----GTTT-TTC---TTACCTACTTTCAGATACTA---C-A-A--GATA------------------AAGTCGGGCCTGG-------GCGCCCA--------------TCT----AGAGAGGGAG-------AGGA-------
dm3 chr3R:20388615-20388866 - CACCATCGGGGAATTGGGCTGAACTTAA-AATGACC----------------------------------------------CATTGGAAAACCAGTAACTAG--C-------------------CAATGAGATTGGAAG-TGAGAATGCTGGCTACC-----------------------ATCAAGGTTGTCTGGT----CAATA---TTAAAG-----TCATAATATATTCGTTTAATGAGCT--GCC---G--TCTCTGCTTT-CA------ATGCAACTG--G-----TCTGATTCGCATTC-----GTTT-TTC---TTACCTACTTTCAGATACTA---C-A-A--GATA------------------AAGTCGGGCCTGG-------GCGCCCA--------------TCT----AGAGAGGGAG-------AGGA-------
droEre2 scaffold_4820:7668592-7668841 + CACCATCG--GAATTGGGCTGAACTTAA-AATGCTC----------------------------------------------CATTGG-AAACCAGTAACTAG--C-------------------CAATGAGACTGGAAG-TGAGAATGCTGGCTACC-----------------------GCCAAGGTTGTCTGGT----CATAA---TTAAAG-----TCATAATATATTCGTTTAATGAGCT--GAC---G--TCTCGATTTT-CA------ATGCAACTG--G-----TCTGATTCGCATTCTC---A-TT-TTT---CTACCTACTTTCAGATACTA---C-A-A--GATA------------------ACGTCGGGCCTGG-------GCGCCCA--------------TCT----AGAGAAGGAG-------GGGA-------
droYak3 3R:26110598-26110855 + CACCAACG--GAATTGGGCTGAACTTAA-AATGCTC----------------------------------------------CATTGGAAAACCAGTAACCAG--T-------------------CAATGAGATTGGAAG-TGAGAATGCTGGCTACC-----------------------GCCAAGGTTGTCTGGT----CATTA---TTAAAG-----TCATAATATATTCGTTTAATGAGCT--GAC---G--TCTCTGTTTT-CA------ATGCAACTG--G-----TCTGATTCGCATTCCC---A-TT-TGT---CTACCTACTTTCAGATACTA---C-A-A--TATA------------------ACGCCGGGCCTGG-------GCGCCCA--------------TCT----AGAGAAGGAGAGAGAGGAAGA-------
droEug1 scf7180000409881:111795-112051 - TACTATCG--GAATTGGGCTAAACGTAG-AATGTCTCAATCG-----------------------------------CTGGCCATTGGGAAACCAGTAACCAG--T-------------------CAATGAGATTGGAAA-TGAGAATGCTGGCTGCC-----------------------GCCAAGGTTGTCTGGC----CATTA---TAAAAG-----TCATAATTTATTCATTTAATGAGAA--GCC---GTCTCTCTGTTTC-CA------CTGCAACTG--G-----TCTGATTTGA-------TTTGTCTTGT---TTTTCT-CTTTCAGATACCA---C-A-A--GACA------------------ACATCGGGCCTGG-------GCGCCCA--------------TCT----AGAGAAGGAG------------------
droBia1 scf7180000302402:4163240-4163506 - CACTATCG--GAATTGGGCTGAGCGTAA-AATGTCTCAATAG-----------------------------------ATGGCCATTGGCAAACCAGTCACCATAGTGACT----------ATAGTCAATGGGATTGGAAA-TGAGAATGCTGGCTGCC-----------------------GCCAAGGTTGTCTGGT----CTCTA---CAGAAG-----TCATAATATATTCGTTTAATGAGCT--------G--TCTCTGTATC-CA------CTGCAACTG--G-----TCTGATTCGTAT-------GTTT-TAT---TTATCCACTTTCAGATACCA---C-A-A--GACA------------------ACGCCGGGCCTGG-------GCGCCCA--------------CCT----AGAGAAGGAG-------AGGA-------
droTak1 scf7180000415310:752850-753104 + TACTATCG--GAATTGGGCTGAACGTAA-AATGTCTCAATAG-----------------------------------ATTG-----------CCA-TAACTAG--T-------------------CAATGAGATTGGAAA-TGAGAATGCTGGCTGCC-----------------------GCCAAGGTTGTCTGGC----CATTA---TTAAAG-----TCATAATATATTCGTTTAATGAGCT---CC---G--TCTCTGTTTTGCA------CTGCAACTG--C-----TCTGATTCTTGTTT-----TTTT-TTTTATTTACTTACTTTCAGATACTACTGC-A-A--GACA------------------ACATCGGGCCTGT-------GCGCCCA--------------TCT----AGAGAAGGAG-------AGGG-------
droEle1 scf7180000491047:394805-395079 + TACTATCG--GAATTGGGCTGCCAGTAA-AATGTCTCAATCG-----------------------------------GTGGCCATTGGGAAACCAGTAACCAG--TCTATGGAAATGGGAAT-GGGAATGGGAATGGAAA-TGAGAATGCTGGCTGCC-----------------------GCCAAGGTTGTCTGGC----CATTA---TAAAAG-----TCATAATATATTCTTTTAATGAGCT--GCC---G--TCTCTGTTTC-GA------ATGCAACTG--G-----TCTGATTCGT-------T-G-TT-TGT---TTATCTACTTTCAGATACCA---C-A-A--GTAA------------------ACATCGGGCCTGG-------GCGCCCA--------------ACT----GAAGAAGGAG-------AGGG-------
droRho1 scf7180000777865:25988-26244 - TACTATCG--GAATTGGGCTGCCAGTAA-AATGTCTCAATCG-----------------------------------ATGGCCATTGGGAAACCAGTAACCAG--T-------------------CGATGGGAATGGAAA-TGAGAATGCTGGCTGCC-----------------------GCCAAGGTTGTCTGGC----CATTA---TAAAAG-----TCATAATATATTCGTTTAATGAGCT--GGC---G--TCTCTGTTTT-CA------ATGCAACTG--G-----TCTGATTCGT-------T-T-CT-TGT---TTACCTACTTTCAGATACCA---C-A-A--GTAA------------------ACATCGGGCCTGG-------GCGCCCA--------------ACT----AGAGAAGGAG-------AGGG-------
droFic1 scf7180000453912:1576858-1577143 - TATAATCG--GAATTGGGCTGAGCGTAAAAATGTCTCAATTG-----------------------------------ATGGGAGTTGGGAAACCAGTAACAAG--TAAATCGAA---CGAACAGTCAATGGGATTGGAAATTGAGAATG-------CC-----------------------GCCAAGGTTGTCTGGC----TATAA---TAAAAG-----TCATAATATATTCGCCTAATCAGCTCTGCC---T--TCTCCGCTTG-CA------ATGCAACTT--G-----TCTGATTTGT-------TTTCAT-TTC---TTACCTACTTTCAGATACCA---C-A-A--TTCA------------------AAGTCGGGCCTGG-------GCGCCCA--A-----------TCT----TGTGAAGGAGAGACAG-GAGGAAGAAGA
droKik1 scf7180000302387:303774-303980 - T--------------------------------------------------------------------------------------------------------------------------------------GAGAA-TGCGAATGCTGGCTGCC-----------------------GCCAAGGTTGTCTGGG----CAAAA---TAAAAG-----CCATAATATATTCATTTAATTAGCC--GCT---G--TCTCGTTTTA-CA------CCACAACTAGAG-----TCTGATTCGA-------TCTTTC-TTG---TTA--TTATTGCAGATACCG---C-A-A--GTGAACTAA-------------GCGCCGGGCCTTG-------GTGCCCCTTATCTGGAAGCTGTAGTAGGAGAGCAGGAG-------GAGG-------
droAna3 scaffold_13088:433531-433778 - TGCTTTCG--GAATTGGGCTGAAAGT-------------------------------------------------------------GGAAACCAGTAA----------------------------------------------------------------------------------GCCAAGGTTGTCTGGT-GGGCATAATAATAAAAG-----CCACAATATATTCATTTAATTAGCT--TCTCAAGTCTCTCTATTCC-CG------CTGCAACTA--G-----TCTGATGTCCAATCTCTTTTTTT-TTT---TTATTTTATTTCAGAAAACT---TGGAA--GTTAACTGCGCAATCGCAG-CGCAGT---TGCAGGGCAACTTGCTTCCA--TTTTGGAAGTCATCA----AC--TGGGTG-------GGTG-------
droBip1 scf7180000396413:488796-489033 - TGCTTTCG--GAATTGGGCTGA-------------------------------------------------------------------AAACCAGTAA----------------------------------------------------------------------------------GCCAAGGTTGTCTGGC----CACAA---TAAAAG-----CCATAATGTATTCATTTAATTAGCT--TCT---G--TCTCTTTTCT-CGCTATAACTGCAACTG--GCTATATCTGATATCCATAT-----CTCT-CTCTG-ATTTTTCCTTTCAGAAACTT---G-GAA--GTTAACTGCGCAATCGCAG-CGCAGT---TGCTGGGCAACTCGCTTCC----TTGGGAAGCCATCA----ACTGG--GAG----AG-CAAC-------
dp5 2:30708822-30709120 + CAGACTGA--GAATTGGGGTC--------------TCAATAATTTACGAGTTGGAGCAATTTCCATTTCCAATGGAAATGCCAGTTGGTAGACCAGTAACCAG--T-----------------------GTCAGTGCCAG-TGCCAGTGCCCCCCGCTCGGTGGCCTGTGCTATGTGGTGGTCCAAGGCTGTCTGGCTGGGCATAA---TAAAAAACCGATGATAATGTATGCGTTTAATTAGCT--CCA---C-----------------------------------------------CATTC-------TC-TTT---CTCTCTCTTTTTAGAGATCG---T-AAAGTGTGAACTGCGCAGTCGCAGTCGCAGCAGCGCCTGT-------GCGCCGG--------------CGC----ACAGCCGGAG-------AAGC-------
droPer2 scaffold_6:6108504-6108793 + CAGACTGA--GAATTGGGGTC--------------TCAATAATTTACGAGTTGGAGCAATTTCCATTTCCAATGGAAATGCCAGTTGGTAGACCAGTAACCAG--T-----------------------GTCAGTGCCAG-TGCCAGTGCTCCCCGCTCGGTGGCCTGTGCTATGTGGTGGTCCAAGGCTGTCTGGCTGGGCATAA---TAAAAAACCGATGATAATGTATGCGTTTAATTAGCT--CCA---C-----------------------------------------------CATTC-------TC-TTT---CTCTCTCTTTTTAGACATCG---T-AAAGTGTGAACTGCGCAGTCGCAGTCGCA---------GT-------GCGCCGG--------------CGC----ACAGCCGGAG-------AAGC-------
droVir3 scaffold_12875:13354579-13354624 + GAA---------------TTAAAAGTAA-AAGGCTT----------------------------------------------AATTGGAAAAACAATAAATAG--T-------------------TAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6328:2342026-2342051 + GG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCACA--------------GCA----ACAG-------------CAGCGAGGCCG
droGri2 scaffold_15252:14884553-14884558 + AGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CACCATCG--GAATTGGGCTGAACTTAA-AATGCCC----------------------------------------------CATTGGAAAACCAGTAACTAG--T-------------------CAATGAGATTGGAAG-TGAGAATGCTGGCTACC-----------------------GCCAAGGTTGTCTGGT----CATTA---TTAAAG-----TCATAATATATTCGTTTAATGAGCT--GCC---G--TCTCTGCTTT-CA------ATGCAACTG--G-----TCTGATACGCATTC-----GTTT-TTC---TTACCTACTTTCAGATACTA---C-A-A--GATA------------------AAGTCGGGCCTGG-------GCGCCCA--------------TCT----AGAGAGGGAG-------AGGA-------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................A---C-A-A--GATA------------------AAGTCGGGCC..................................................................1811.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................A---C-A-A--GATA------------------AAGTCGGGCCTGG-------GCGC....................................................2511.00100000000000010000
..................................................................................................................................................................................................................................................................................................................................................ACTA---C-A-A--GATA------------------AAGTCGGGCCT.................................................................2211.00101000000000000000
.......................................................................................................................................................................................................................................................................TTT-CA------ATGCAACTG--G-----TCTGATACGCA...................................................................................................................................................2611.00100000010000000000
..........................................................................................................................................AG-TGAGAATGCTGGCA.......................................................................................................................................................................................................................................................................................................1621.00200000000200000000
.......................................................................................................................................GGAAG-TGAGAATGCTGA.........................................................................................................................................................................................................................................................................................................1740.25100000000010000000
.........................................................................................................................................AAG-TGAGAATGCTGA.........................................................................................................................................................................................................................................................................................................15130.15200000001010000000
droSec2
CACCATCG--GAATTGGGCTGAACTTAA-AATGCCC----------------------------------------------CATGGGAAAACCAGTAACTAG--T-------------------CAATGAGATTGGAAG-TGAGAATGCTGGCTACC-----------------------GCCAAGGTTGTCTGGT----CATTA---TTAAAG-----TCATAATATATTCGTTTAATGAGCT--GCC---G--TCTCTGCTTT-CA------ATGCAACTG--G-----TCTGATACGCATTC-----GTTT-TTC---TTACCTACTTTCAGATACTA---C-A-A--GATA------------------AAGTCGGGCCTGG-------GCGCCCA--------------TCT----AGAGAGGGAG-------AGGA-------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
CACCATCGGGGAATTGGGCTGAACTTAA-AATGACC----------------------------------------------CATTGGAAAACCAGTAACTAG--C-------------------CAATGAGATTGGAAG-TGAGAATGCTGGCTACC-----------------------ATCAAGGTTGTCTGGT----CAATA---TTAAAG-----TCATAATATATTCGTTTAATGAGCT--GCC---G--TCTCTGCTTT-CA------ATGCAACTG--G-----TCTGATTCGCATTC-----GTTT-TTC---TTACCTACTTTCAGATACTA---C-A-A--GATA------------------AAGTCGGGCCTGG-------GCGCCCA--------------TCT----AGAGAGGGAG-------AGGA-------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................C-----GTTT-TTC---TTACCTACTTTCAG..................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TACTA---C-A-A--GATA------------------AAGTCGGGC...................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................ACTG--G-----TCTGATTCGCATTC-----GTTT-TTC---................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................CTGG-------GCGCCCA--------------TCT----AGAG........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................A-A--GATA------------------AAGTCGGGCCTGG-------GCGCCCA--------------TCT----............................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................A-A--GATA------------------AAGTCGGGCCTGG-------GCGCC...................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................CCTGG-------GCGCCCA--------------TCT----AGAGAGGGAG-------A..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................TCATAATATATTCGTTTAATGAGCT--GCC---.....................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................A--GATA------------------AAGTCGGGCCTGG-------GCGCCCA--------------...................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............ATTGGGCTGAACTTAA-AATG.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................................................................................................................................................................................................................................................................................................A--GATA------------------AAGTCGGGCCTGG-------GCGCC...................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................TA---C-A-A--GATA------------------AAGTCGGGC...................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TGAGATTGGAAG-TGAGAATGCTGGC........................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................TA---C-A-A--GATA------------------AAGTCGGGCCTGG-------GC......................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................GCGCCCA--------------TCT----AGAGAGGGA...................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................TTGGAAG-TGAGAATGCTGG.........................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................TTCAGATACTA---C-A-A--GATA------------------AAGTCGGG....................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................TACTA---C-A-A--GATA------------------AAGTCGGGCCTGG-------GC......................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................CAACTG--G-----TCTGATTCGCATTC-----GTTT-......................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................GAGATTGGAAG-TGAGAATGCTGGC........................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................TGG-------GCGCCCA--------------TCT----AGAGAGGGAG-------AGG........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................C-A-A--GATA------------------AAGTCGGGCCTGG-------........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TGAGAATGCTGGCTACC-----------------------ATCAAGGTTG...................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................TTAAAG-----TCATAATATATTCGT.......................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................GCCCA--------------TCT----AGAGAGGGAG-------AGGA-------2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................GCCTGG-------GCGCCCA--------------TCT----AGA.........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................TA---C-A-A--GATA------------------AAGTCGGGCCTGG-------GCGC....................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CCCA--------------TCT----AGAGAGGGAG-------AGG........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................................................................................................................................................................................................................................................................AACTG--G-----TCTGATTCGCATTC-----GT.........................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................GGCCTGG-------GCGCCCA--------------TCT----AGAGAGGGAG-------A..........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................A--GATA------------------AAGTCGGGCCTGG-------GCGCCCA--------------T..................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................TGG-------GCGCCCA--------------TCT----AGAGAGGGAG-------AGGA-------2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................A---C-A-A--GATA------------------AAGTCGGGCCTGG-------........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................TAATATATTCGTTTAATGAGCT--GCC---G--..................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................GTCGGGCCTGG-------GCGCCCA--------------TC.................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................AAGTCGGGCCTGG-------GCGCCCA--------------TC.................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................AGTCGGGCCTGG-------GCGCCCA--------------T..................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................TA------------------AAGTCGGGCCTGG-------GCGC....................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................CTA---C-A-A--GATA------------------AAGTCGGGCCTGG-------G.......................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................ATA------------------AAGTCGGGCCTGG-------GCGCCC..................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................T-CA------ATGCAACTG--G-----TCTGATTCGCATT.................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................GCCCA--------------TCT----AGAGAGGGAG-------AGG........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................AATGAGATTGGAAG-TGAGAGG..............................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
........................................................................................................................................GAAG-TGAGAATGCTGGAA.......................................................................................................................................................................................................................................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CACCATCG--GAATTGGGCTGAACTTAA-AATGCTC----------------------------------------------CATTGG-AAACCAGTAACTAG--C-------------------CAATGAGACTGGAAG-TGAGAATGCTGGCTACC-----------------------GCCAAGGTTGTCTGGT----CATAA---TTAAAG-----TCATAATATATTCGTTTAATGAGCT--GAC---G--TCTCGATTTT-CA------ATGCAACTG--G-----TCTGATTCGCATTCTC---A-TT-TTT---CTACCTACTTTCAGATACTA---C-A-A--GATA------------------ACGTCGGGCCTGG-------GCGCCCA--------------TCT----AGAGAAGGAG-------GGGA-------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................TA---C-A-A--GATA------------------ACGTCGGGCCTGG-------GCGCC...................................................2714.0040000004
.....................................................................................................................................................................................................................................................................................................................................................A---C-A-A--GATA------------------ACGTCGGGCCTGG-------GCGCC...................................................2611.0010100000
.............................................................................................................................................................................................................................................................................................................................................................................................GCCTGG-------GCGCCCA--------------TCT----AGAG........................2011.0010010000
..............................................................................................................................................................................................................................................................................................................................................AGATACTA---C-A-A--GATA------------------ACGT........................................................................1911.0010000010
droYak3
CACCAACG--GAATTGGGCTGAACTTAA-AATGCTC----------------------------------------------CATTGGAAAACCAGTAACCAG--T-------------------CAATGAGATTGGAAG-TGAGAATGCTGGCTACC-----------------------GCCAAGGTTGTCTGGT----CATTA---TTAAAG-----TCATAATATATTCGTTTAATGAGCT--GAC---G--TCTCTGTTTT-CA------ATGCAACTG--G-----TCTGATTCGCATTCCC---A-TT-TGT---CTACCTACTTTCAGATACTA---C-A-A--TATA------------------ACGCCGGGCCTGG-------GCGCCCA--------------TCT----AGAGAAGGAGAGAGAGGAAGA-------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................A------------------ACGCCGGGCCTGG-------GCGCCCA--------------TC.................................2311.00100000100000
.ACCAACG--GAATTGGGCTGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................CGCCCA--------------TCT----AGAGAAGGA...................1811.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................A--TATA------------------ACGCCGGGCCTGG-------GC......................................................2011.00100000010000
...................................................................................................................................................................................................................................................................................................................................................CTA---C-A-A--TATA------------------ACGCCGGGCCTGG-------GC......................................................2511.00101000000000
droEug1
TACTATCG--GAATTGGGCTAAACGTAG-AATGTCTCAATCG-----------------------------------CTGGCCATTGGGAAACCAGTAACCAG--T-------------------CAATGAGATTGGAAA-TGAGAATGCTGGCTGCC-----------------------GCCAAGGTTGTCTGGC----CATTA---TAAAAG-----TCATAATTTATTCATTTAATGAGAA--GCC---GTCTCTCTGTTTC-CA------CTGCAACTG--G-----TCTGATTTGA-------TTTGTCTTGT---TTTTCT-CTTTCAGATACCA---C-A-A--GACA------------------ACATCGGGCCTGG-------GCGCCCA--------------TCT----AGAGAAGGAG------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CACTATCG--GAATTGGGCTGAGCGTAA-AATGTCTCAATAG-----------------------------------ATGGCCATTGGCAAACCAGTCACCATAGTGACT----------ATAGTCAATGGGATTGGAAA-TGAGAATGCTGGCTGCC-----------------------GCCAAGGTTGTCTGGT----CTCTA---CAGAAG-----TCATAATATATTCGTTTAATGAGCT--------G--TCTCTGTATC-CA------CTGCAACTG--G-----TCTGATTCGTAT-------GTTT-TAT---TTATCCACTTTCAGATACCA---C-A-A--GACA------------------ACGCCGGGCCTGG-------GCGCCCA--------------CCT----AGAGAAGGAG-------AGGA-------SizeHit CountTotal NormTotal
No Reads
droTak1
TACTATCG--GAATTGGGCTGAACGTAA-AATGTCTCAATAG-----------------------------------ATTG-----------CCA-TAACTAG--T-------------------CAATGAGATTGGAAA-TGAGAATGCTGGCTGCC-----------------------GCCAAGGTTGTCTGGC----CATTA---TTAAAG-----TCATAATATATTCGTTTAATGAGCT---CC---G--TCTCTGTTTTGCA------CTGCAACTG--C-----TCTGATTCTTGTTT-----TTTT-TTTTATTTACTTACTTTCAGATACTACTGC-A-A--GACA------------------ACATCGGGCCTGT-------GCGCCCA--------------TCT----AGAGAAGGAG-------AGGG-------SizeHit CountTotal NormTotal
No Reads
droEle1
TACTATCG--GAATTGGGCTGCCAGTAA-AATGTCTCAATCG-----------------------------------GTGGCCATTGGGAAACCAGTAACCAG--TCTATGGAAATGGGAAT-GGGAATGGGAATGGAAA-TGAGAATGCTGGCTGCC-----------------------GCCAAGGTTGTCTGGC----CATTA---TAAAAG-----TCATAATATATTCTTTTAATGAGCT--GCC---G--TCTCTGTTTC-GA------ATGCAACTG--G-----TCTGATTCGT-------T-G-TT-TGT---TTATCTACTTTCAGATACCA---C-A-A--GTAA------------------ACATCGGGCCTGG-------GCGCCCA--------------ACT----GAAGAAGGAG-------AGGG-------SizeHit CountTotal NormTotal
No Reads
droRho1
TACTATCG--GAATTGGGCTGCCAGTAA-AATGTCTCAATCG-----------------------------------ATGGCCATTGGGAAACCAGTAACCAG--T-------------------CGATGGGAATGGAAA-TGAGAATGCTGGCTGCC-----------------------GCCAAGGTTGTCTGGC----CATTA---TAAAAG-----TCATAATATATTCGTTTAATGAGCT--GGC---G--TCTCTGTTTT-CA------ATGCAACTG--G-----TCTGATTCGT-------T-T-CT-TGT---TTACCTACTTTCAGATACCA---C-A-A--GTAA------------------ACATCGGGCCTGG-------GCGCCCA--------------ACT----AGAGAAGGAG-------AGGG-------SizeHit CountTotal NormTotal
No Reads
droFic1
TATAATCG--GAATTGGGCTGAGCGTAAAAATGTCTCAATTG-----------------------------------ATGGGAGTTGGGAAACCAGTAACAAG--TAAATCGAA---CGAACAGTCAATGGGATTGGAAATTGAGAATG-------CC-----------------------GCCAAGGTTGTCTGGC----TATAA---TAAAAG-----TCATAATATATTCGCCTAATCAGCTCTGCC---T--TCTCCGCTTG-CA------ATGCAACTT--G-----TCTGATTTGT-------TTTCAT-TTC---TTACCTACTTTCAGATACCA---C-A-A--TTCA------------------AAGTCGGGCCTGG-------GCGCCCA--A-----------TCT----TGTGAAGGAGAGACAG-GAGGAAGAAGASizeHit CountTotal NormTotal
No Reads
droKik1
T--------------------------------------------------------------------------------------------------------------------------------------GAGAA-TGCGAATGCTGGCTGCC-----------------------GCCAAGGTTGTCTGGG----CAAAA---TAAAAG-----CCATAATATATTCATTTAATTAGCC--GCT---G--TCTCGTTTTA-CA------CCACAACTAGAG-----TCTGATTCGA-------TCTTTC-TTG---TTA--TTATTGCAGATACCG---C-A-A--GTGAACTAA-------------GCGCCGGGCCTTG-------GTGCCCCTTATCTGGAAGCTGTAGTAGGAGAGCAGGAG-------GAGG-------SizeHit CountTotal NormTotal
No Reads
droAna3
TGCTTTCG--GAATTGGGCTGAAAGT-------------------------------------------------------------GGAAACCAGTAA----------------------------------------------------------------------------------GCCAAGGTTGTCTGGT-GGGCATAATAATAAAAG-----CCACAATATATTCATTTAATTAGCT--TCTCAAGTCTCTCTATTCC-CG------CTGCAACTA--G-----TCTGATGTCCAATCTCTTTTTTT-TTT---TTATTTTATTTCAGAAAACT---TGGAA--GTTAACTGCGCAATCGCAG-CGCAGT---TGCAGGGCAACTTGCTTCCA--TTTTGGAAGTCATCA----AC--TGGGTG-------GGTG-------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................TCGCAG-CGCAGT---TGCAGGGCAACTT........................................................2512.002000002
.................................................................................................................................................................................................................................................................................................................................................AAACT---TGGAA--GTTAACTGCGC.......................................................................................2112.002011000
...................................................................................................................................................................................................................................................................................................................................................ACT---TGGAA--GTTAACTGCGC.......................................................................................1911.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................A--TTTTGGAAGTCATCA----AC--TGGGT...................2311.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................CA--TTTTGGAAGTCATCA----AC--TGGGTG-------GGC........2811.001010000
..................................................................................................................................................................................................................................................................................................................................................AACT---TGGAA--GTTAACTGCGC.......................................................................................2011.001100000
.................................................................................................................................................................................................................................................................................................................................................AAACT---TGGAA--GTTAACTGC.........................................................................................1911.001010000
droBip1
TGCTTTCG--GAATTGGGCTGA-------------------------------------------------------------------AAACCAGTAA----------------------------------------------------------------------------------GCCAAGGTTGTCTGGC----CACAA---TAAAAG-----CCATAATGTATTCATTTAATTAGCT--TCT---G--TCTCTTTTCT-CGCTATAACTGCAACTG--GCTATATCTGATATCCATAT-----CTCT-CTCTG-ATTTTTCCTTTCAGAAACTT---G-GAA--GTTAACTGCGCAATCGCAG-CGCAGT---TGCTGGGCAACTCGCTTCC----TTGGGAAGCCATCA----ACTGG--GAG----AG-CAAC-------SizeHit CountTotal NormTotal
No Reads
dp5
CAGACTGA--GAATTGGGGTC--------------TCAATAATTTACGAGTTGGAGCAATTTCCATTTCCAATGGAAATGCCAGTTGGTAGACCAGTAACCAG--T-----------------------GTCAGTGCCAG-TGCCAGTGCCCCCCGCTCGGTGGCCTGTGCTATGTGGTGGTCCAAGGCTGTCTGGCTGGGCATAA---TAAAAAACCGATGATAATGTATGCGTTTAATTAGCT--CCA---C-----------------------------------------------CATTC-------TC-TTT---CTCTCTCTTTTTAGAGATCG---T-AAAGTGTGAACTGCGCAGTCGCAGTCGCAGCAGCGCCTGT-------GCGCCGG--------------CGC----ACAGCCGGAG-------AAGC-------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................GCAGTCGCAGTCGCAGCAGCGCCT.................................................................2411.0010100000000
.................................................................................................................................................................................................................................................................................................................................................GATCG---T-AAAGTGTGAACTGCGC.......................................................................................2211.0010100000000
droPer2
CAGACTGA--GAATTGGGGTC--------------TCAATAATTTACGAGTTGGAGCAATTTCCATTTCCAATGGAAATGCCAGTTGGTAGACCAGTAACCAG--T-----------------------GTCAGTGCCAG-TGCCAGTGCTCCCCGCTCGGTGGCCTGTGCTATGTGGTGGTCCAAGGCTGTCTGGCTGGGCATAA---TAAAAAACCGATGATAATGTATGCGTTTAATTAGCT--CCA---C-----------------------------------------------CATTC-------TC-TTT---CTCTCTCTTTTTAGACATCG---T-AAAGTGTGAACTGCGCAGTCGCAGTCGCA---------GT-------GCGCCGG--------------CGC----ACAGCCGGAG-------AAGC-------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................GTAGACCAGTAACCAG--T-----------------------GTCAGTGCCA.......................................................................................................................................................................................................................................................................................................................2712.002200000
.............................................................................................................................................TGCCAGTGCTCCCCGCTCGGTGGCC............................................................................................................................................................................................................................................................................................2511.001010000
droVir3
GAA---------------TTAAAAGTAA-AAGGCTT----------------------------------------------AATTGGAAAAACAATAAATAG--T-------------------TAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
GG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCACA--------------GCA----ACAG-------------CAGCGAGGCCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 03:18 PM