ID:

dsi_27668

 Coordinate:

x:6832927-6833147 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-45.4 -44.9 -44.9

Flybase annnotation

five_prime_UTR [x_6833148_6833151_+]; CDS [x_6833152_6833796_+]; exon [x_6833148_6834063_+]; five_prime_UTR [x_6832767_6832926_+]; exon [x_6832767_6832926_+]; intron [x_6832927_6833147_+]

Repeatable elements

NameClassFamilyStrand
(A)nSimple_repeatSimple_repeat+
mature
  1. 2l:9908403-9908424 -
  2. 2r:2510496-2510517 -
  3. 2r:7232947-7232968 -
  4. 3l:8633377-8633398 -
  5. 3l:9441467-9441488 -
  6. 3l:11570374-11570395 -
  7. 3l:15764861-15764882 -
  8. 3l:18387307-18387328 -
  9. 3r:2043953-2043974 -
  10. 3r:5107952-5107973 -
  11. 3r:23557986-23558007 -
  12. x:8518006-8518027 -
  13. x:11050931-11050952 -
  14. x:12331236-12331257 -
  15. x:14091053-14091074 -
  16. node_36212:1828-1849 -
  17. node_47854:129-150 -
  18. node_12893:21288-21309 -
  19. node_24415:76804-76825 -
  20. node_2983:4080-4101 -
  21. 2l:3953194-3953215 +
  22. 2l:22184668-22184689 +
  23. 2l:22804844-22804865 +
  24. 2l:23238038-23238059 +
  25. 2l:23423006-23423027 +
  26. 2r:402273-402294 +
  27. 2r:16101469-16101490 +
  28. 3l:22594303-22594324 +
  29. 3l:23178487-23178508 +
  30. 3r:20748357-20748378 +
  31. 3r:20750521-20750542 +
  32. x:5232161-5232182 +
  33. x:5973552-5973573 +
  34. dsi_10603  x:7493902-7493923 +
  35. x:9685500-9685521 +
  36. x:20355516-20355537 +
  37. node_109882:40-61 +
  38. node_42968:9-30 +
  39. node_7842:2450-2471 +
  40. node_6885:32-53 +
  41. 2r:313123-313144 +
  42. 2r:17739826-17739847 +
  43. dsi_27901  3l:7282197-7282218 +
  44. 3l:11094761-11094782 +
  45. 3l:22581995-22582016 +
  46. 3r:11519235-11519256 +
  47. 3r:13678877-13678898 +
  48. dsi_31343  3r:17034889-17034910 +
  49. x:227924-227945 +
  50. x:233510-233531 +
  51. x:4421691-4421712 +
  52. x:5226615-5226636 +
  53. x:9713580-9713601 +
  54. x:9713722-9713743 +
  55. x:9911105-9911126 +
  56. x:12521282-12521303 +
  57. node_68951:162-183 +
  58. node_14946:887-908 +
  59. 2l:9149945-9149966 +
  60. 2l:18712067-18712088 +
  61. 2r:1935365-1935386 +
  62. 2r:2293266-2293287 +
  63. 2r:5967133-5967154 +
  64. 2r:7204085-7204106 +
  65. 2r:12719231-12719252 +
  66. 3l:8987824-8987845 +
  67. 3r:7349900-7349921 +
  68. x:4653424-4653445 +
  69. x:4702465-4702486 +
  70. x:4933795-4933816 +
  71. dsi_27668  x:6833043-6833064 +
  72. x:9823071-9823092 +
  73. x:11008756-11008777 +
  74. x:11982120-11982141 +
  75. x:17128259-17128280 +
  76. x:17408944-17408965 +
  77. node_20622:64-85 +
  78. node_97606:55-76 +
  79. 2l:2779440-2779461 -
  80. 2l:11131641-11131662 -
  81. 2r:10129605-10129626 -
  82. 2r:11158105-11158126 -
  83. 2r:15406012-15406033 -
  84. 3l:10248310-10248331 -
  85. 3l:10261820-10261841 -
  86. 3l:22911498-22911519 -
  87. 3r:12841410-12841431 -
  88. 3r:13625996-13626017 -
  89. 3r:14710192-14710213 -
  90. 4:951555-951576 -
  91. x:6167164-6167185 -
  92. x:11359430-11359451 -
  93. x:12542461-12542482 -
  94. x:12596410-12596431 -
  95. x:13496643-13496664 -
  96. node_40733:6132-6153 -
  97. node_107411:173-194 -
  98. node_59504:271-292 -
  99. 2r:2476314-2476335 +
  100. 2r:10213504-10213525 +
  101. 2r:13812138-13812159 +
  102. 2r:14924684-14924705 +
  103. 3l:22631514-22631535 +
  104. 3l:22681787-22681808 +
  105. 3l:22747039-22747060 +
  106. 3l:23840512-23840533 +
  107. 3r:11693070-11693091 +
  108. x:4261103-4261124 +
  109. dsi_25082  x:7851844-7851865 +
  110. x:9722153-9722174 +
  111. x:10076455-10076476 +
  112. node_45218:5-26 +
  113. node_25412:68-89 +
  114. node_105149:72-93 +
  115. node_123134:84-105 +
  116. node_25520:154-175 +
  117. node_34857:46-67 +
  118. 2l:21983338-21983359 +
  119. 2l:22194296-22194317 +
  120. 2l:23180347-23180368 +
  121. 2r:354943-354964 +
  122. 2r:1102309-1102330 +
  123. 2r:1597893-1597914 +
  124. 2r:2883177-2883198 +
  125. 3l:7167929-7167950 +
  126. 3r:11288966-11288987 +
  127. 3r:13617305-13617326 +
  128. 3r:19225496-19225517 +
  129. 4:5604-5625 +
  130. x:11015416-11015437 +
  131. x:19627894-19627915 +
  132. node_79942:627-648 +
  133. node_20298:136-157 +
  134. node_5674:1155-1176 +
  135. node_35965:23-44 +
  136. node_66605:759-780 +
  137. 2l:22572762-22572783 +
  138. 2l:22697209-22697230 +
  139. 2r:208347-208368 +
  140. 2r:1525896-1525917 +
  141. 2r:8523617-8523638 +
  142. 2r:8523733-8523754 +
  143. 3l:16745040-16745061 +
  144. x:4731581-4731602 +
  145. x:14764108-14764129 +
  146. x:15570444-15570465 +
  147. node_76688:510-531 +
star

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACATATGGTGAAACAAGATTTTGTAAACAAAATCATTTGTATATATCTAGGTACGTTTTACGATTTTGGAATCGCGGAAATGTTACAAAAATTTTCTGTGTGGGCATTACGTCCTGAAAAGTGATATTTATTTCTAGACATAAAAAGCGTAGAGTTTCAACAAAAAAAAAAAAAAAAAAAAAAAAAAATGCGACACACCTGAAGGTACGTACTATCCGACAGACGCTAGCCCTGGATAGGCGGACGTTGTGCGGCACGCAGATTCAAACAGAATCATGCAGCGTTCGTCTTATCCTCTACGCCACATTGTGCGACCCAGCT
**************************************************(((((((((.(((((....)))))..)))))).)))........((((((((.((((.((((((....((((((...))))))...........((((.....))))...............................((((....(((....))).))))(((((((..............)))))))..)))))).))))..)))))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M053
female body
 GSM343915
embryo
 SRR902009
testis
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR618934
dsim w501 ovaries
 M025
embryo
 O001
Testis
......................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA..................................................................................................................................... 22 0 20 7.70 154 0 154 0 0 0 0 0 0 0 0 0 0
...............................................................TTTTGGAATCGCCGTAATG............................................................................................................................................................................................................................................... 19 2 1 7.00 7 5 0 0 0 0 1 1 0 0 0 0 0
...................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA.......................................................................................................................................... 20 0 20 5.00 100 0 0 0 100 0 0 0 0 0 0 0 0
...............................................................TTTTGGAATCGCCGTAAT................................................................................................................................................................................................................................................ 18 2 6 4.17 25 22 0 0 0 0 3 0 0 0 0 0 0
.................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAA...................................................................................................................................... 26 0 20 2.35 47 0 47 0 0 0 0 0 0 0 0 0 0
...............................................................TTTTGGAATCGCCGTAATGAT............................................................................................................................................................................................................................................. 21 3 3 2.33 7 7 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTTTGGAATCGCCGTAATGA.............................................................................................................................................................................................................................................. 20 3 8 1.50 12 12 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA...................................................................................................................................... 21 0 20 1.05 21 0 0 0 0 21 0 0 0 0 0 0 0
.................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAGCAACACA............................................................................................................................ 36 2 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAACACGACACCCC.......................................................................................................................... 35 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAGACGAGACACA............................................................................................................................ 36 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAACAAAACACGACACA............................................................................................................................ 36 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAGCAACGCACC.......................................................................................................................... 35 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACGCGGCACA............................................................................................................................ 35 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AGAGTTTTAACAAAAAAAAAAAAAAAAAAAAAAAAA....................................................................................................................................... 36 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAA...................................................................................................................................... 25 0 20 0.85 17 0 0 0 0 17 0 0 0 0 0 0 0
................................................................TTTGGAATCGCCGTAAT................................................................................................................................................................................................................................................ 17 2 19 0.68 13 13 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAA..................................................................................................................................... 25 0 20 0.60 12 0 0 0 0 0 0 0 0 12 0 0 0
................................................................TTTGGAATCGCCGTAATGAT............................................................................................................................................................................................................................................. 20 3 9 0.56 5 5 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AAAGAGATATTTATTTCT.......................................................................................................................................................................................... 18 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACGACACACCA......................................................................................................................... 36 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAATACAACACA............................................................................................................................ 35 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................TTGGAATCGCCGTAATG............................................................................................................................................................................................................................................... 17 2 15 0.47 7 7 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGCGAC............................................................................................................................... 35 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TAGAGTCTGAAGAAAAAAAAAAAAAA.................................................................................................................................................. 26 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TTCAACGAAAAAAAAAAAAAAAA............................................................................................................................................... 23 1 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................CAACAAAAAAAAAAAAAAAAAAAAAAAA........................................................................................................................................ 28 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................TAGAGTCTGAAGAAAAAAAAAAAAA................................................................................................................................................... 25 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAACGCCCCACA............................................................................................................................ 36 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................TTTGGAATCGCCGTAATGA.............................................................................................................................................................................................................................................. 19 3 20 0.25 5 5 0 0 0 0 0 0 0 0 0 0 0
.............................................................GTTTTTGGAATCGCCGTAAT................................................................................................................................................................................................................................................ 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CACCCGAAGTTACGTACCA........................................................................................................... 19 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAATACCAGACAC........................................................................................................................... 35 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................AACAAAAAAAAAAAAAAAAAAAAAAAAAA...................................................................................................................................... 29 0 8 0.25 2 0 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................TGAACAGAAAAAAAAAAAAAAAAAAAAAAAA...................................................................................................................................... 31 2 10 0.20 2 1 0 0 0 0 0 0 1 0 0 0 0
.......................................TATATATCTCGGTACCTT........................................................................................................................................................................................................................................................................ 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TCGAGTTTCATAAAAAAAAAAAAAAAA................................................................................................................................................. 27 3 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................AAAAAAAAAAAAAAAAAA.............................................................................................................................................. 18 0 20 0.20 4 0 0 0 0 0 0 0 0 0 0 4 0
.......................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAT.................................................................................................................................... 22 0 20 0.20 4 0 2 0 0 2 0 0 0 0 0 0 0
.................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAATGCCCCCC............................................................................................................................. 35 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................TTGGAATCGCCGTAATGAT............................................................................................................................................................................................................................................. 19 3 20 0.20 4 4 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAACCCCACAC............................................................................................................................. 35 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................TTTGGAATCGCCGTAATG............................................................................................................................................................................................................................................... 18 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AGAGTTTTAACAAGAAATAAAA..................................................................................................................................................... 22 3 13 0.15 2 0 0 0 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAT.................................................................................................................................... 23 0 20 0.15 3 0 0 0 3 0 0 0 0 0 0 0 0
.................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAGAACGACAC............................................................................................................................. 35 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGGCACA............................................................................................................................ 36 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0
........TGAGAGAAGGTTTTGTAAACA.................................................................................................................................................................................................................................................................................................... 21 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AGACGATCAACAAAAAAAAAAAAAAAAA............................................................................................................................................... 28 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................TAGAGTCTGAAGAAAAAAAAAAAA.................................................................................................................................................... 24 3 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAACACAACACAC........................................................................................................................... 35 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TAGAGTCTGAAGAAAAAAAAAAA..................................................................................................................................................... 23 3 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................AGAGTTCTAACAAAAAAAAA....................................................................................................................................................... 20 2 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAT.................................................................................................................................... 24 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................ACAAAAAAAAAAAAAAAAAAAA............................................................................................................................................ 22 0 20 0.10 2 0 0 0 1 0 0 0 0 0 0 1 0
................................................................................................................................................................CAAAAAAAAAAAAAAAAAAAAAA.......................................................................................................................................... 23 0 20 0.10 2 0 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................AACAAAAAAAAAAAAAAAAAAAAAAAAA....................................................................................................................................... 28 0 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................TGAACAGAAAAAAAAAAAAAAAAAAAAAAA....................................................................................................................................... 30 2 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAACACAACACA............................................................................................................................ 36 3 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................CAACAAAAAAAAAAAAAAAAA............................................................................................................................................... 21 0 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAACGACACAA........................................................................................................................... 36 3 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................TTATCCTCTCCGCCA................. 15 1 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................TGAACAGAAAAAAAAAAAAAAAAAAAAAA........................................................................................................................................ 29 2 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAACACCACAC............................................................................................................................. 35 3 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TTTCAAAAAAAAAAAAAAAAAAAAAAAA........................................................................................................................................... 28 1 16 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................AGAGTTCCTACAAAAAAAA........................................................................................................................................................ 19 2 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................AACAAAAAAAAAAAAAAAAAAAAAAA......................................................................................................................................... 26 0 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................GTTGCGACAAAAAAAAAAAAAAA................................................................................................................................................. 23 2 19 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................TTTTAACAGTAAAAAAAAAAAAAAAAA............................................................................................................................................ 27 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................ACAAAAAAAAAAAAAAAAAAAAA........................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................ACAAAAAAAAGAAAAAAAAAAAACAAA....................................................................................................................................... 27 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................AAAATAAAAAAAAAAAAAAAAAAAAAT.................................................................................................................................... 27 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................AAAAAAAAAAAAAAAAA............................................................................................................................................... 17 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................GTACAAAGCGTAGAGT...................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TGAACAGAAAAAAAAAAAAAAAAAAAAA......................................................................................................................................... 28 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TTTCGGCAAAAAAAAAAAAAAAAAAA............................................................................................................................................. 26 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAATG................................................................................................................................... 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAA..................................................................................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
...TATGGGGAAACAAGA............................................................................................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................AACAAAAAAAAAAAAAAAAAAAAAA.......................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................AACAGAGAAAAAAAAAAAAAAAAAAAAA....................................................................................................................................... 28 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GTAATATCCGGCAGAC................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................CAACAAAAAAAAAAACAAAAAAAA............................................................................................................................................ 24 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAA....................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................AACAAAAAAAAAAAAAAAAAAAA............................................................................................................................................ 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACACAACACA............................................................................................................................ 35 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TGAACATAAAAAAAAAAAAAAAAAAAAA......................................................................................................................................... 28 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TGTATACCACTTTGTTCTAAAACATTTGTTTTAGTAAACATATATAGATCCATGCAAAATGCTAAAACCTTAGCGCCTTTACAATGTTTTTAAAAGACACACCCGTAATGCAGGACTTTTCACTATAAATAAAGATCTGTATTTTTCGCATCTCAAAGTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCTGTGTGGACTTCCATGCATGATAGGCTGTCTGCGATCGGGACCTATCCGCCTGCAACACGCCGTGCGTCTAAGTTTGTCTTAGTACGTCGCAAGCAGAATAGGAGATGCGGTGTAACACGCTGGGTCGA
**************************************************(((((((((.(((((....)))))..)))))).)))........((((((((.((((.((((((....((((((...))))))...........((((.....))))...............................((((....(((....))).))))(((((((..............)))))))..)))))).))))..)))))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 GSM343915
embryo
 M025
embryo
 M053
female body
 SRR902008
ovaries
....................................................................................................................................................................................................................................................................................................AGGTGATGCAGTGTAACAC.......... 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGGCTGTGTGCCATCG........................................................................................... 16 2 17 0.88 15 15 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................AAAAGTTGTTTTTTTTTTTGTTGTTT.............................................................................................................................................. 26 3 8 0.63 5 2 0 3 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................CGTCTCAGTTTGTCTTA............................................... 17 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AAGGCTCTCTGCGATCGGG......................................................................................... 19 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................TTTAAGTTTGTCTTAGTAAG.......................................... 20 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................GTGGCAAGCAGCATAGGCGA....................... 20 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................GTGGGCTTCAATGCATGGT........................................................................................................... 19 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................AAAAGTTGTTTTTTTTTTTGTTGTTTT............................................................................................................................................. 27 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................AAAGTTGTTTTTTTTATTGTTGTTT.............................................................................................................................................. 25 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................TTAGTACGACGCAAG................................... 15 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................AAAGTTGTTGTTTTTTTTTATT................................................................................................................................................. 22 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TAGGCTGTGTGCCATCG........................................................................................... 17 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................TGTGTCTCAGTTTGTCTTA............................................... 19 2 6 0.17 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................AAGTTGTTTTTTTTTTTGTTGTTTTGT........................................................................................................................................... 27 3 9 0.11 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTA.................................................................................................................................... 23 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0
.......................AGTTTTTTTAGTAAACAGATA..................................................................................................................................................................................................................................................................................... 21 3 20 0.10 2 0 0 0 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................TGGCTGCGAGAGGGACCTA.................................................................................... 19 3 11 0.09 1 0 1 0 0 0 0 0 0 0 0
..................ATTACATTTGTTTTAGTAAATA......................................................................................................................................................................................................................................................................................... 22 3 18 0.06 1 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTA.................................................................................................................................... 28 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTA.................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ACCGGGACCTAGCAGCCTG............................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................TTTTTTTTTTTTTTTTTTT............................................................................................................................................. 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:6832877-6833197 + dsi_27668 AC-ATAT---------------------------------------------GG---TGAAAC----------AAGAT-------------TTTGTAAACAAAATCATTTGTATATATC----TAGGTACGTTTTA------CGATTTTG--------GAATCG---------------------------------------CGGAAATGT----------TACA-----AAAATTTTCTGTGTGGGCATTACGTCCTGAAAA--GTG--ATATTTATTTC---TAGACATAAAAAGCGTAGAGTTTC-----A---------------------------------------------------------------AC-AAAA--AAAA--AAAAA-----AAAA-AAAAAAA----------AAATGCGACACACC------------TGAAGGTACGTACTATCCGACAGACGCTAGCCCTGGATAG-------GC-----GGAC-------------GTTGTGCGGCACGCAGA------TTCAAACAGAATCATGCAGCGTTCGTCTTATCCTCTA------CGCCACATTGTGCGACCCAGCT
droSec2 scaffold_24:462578-462857 + AC-ATAT---------------------------------------------GG---TGAAAT----------AAGAT-------------TTTGTAAACAAAATCATTTGTATATATC----TAGGTACGTTTTA------CGATTTCG--------GAATCG---------------------------------------CGGAAGTGT----------TACA-----AAAATTTTCTGTGTGGGCATTACGTCCTGAAAA--ATG--ATATTTATTTC---TAGACATAAAAAGCGTAGAGTTTC-----A---------------------------------------------------------------AC-AAAA--AAAA--AAAAA-----AAAA-AAAAAAA----------AA-C-------------------------GCG---------------------------------TGCGTCGTATAA---TAAC-------------TTCGTTT---TCG----TTTTCGG--TTACAGAATCATGCAGCGTTCGTCTTATCCTCTA------CGCCACATTGTGCGACCCAGCT
dm3 chrX:7252939-7253210 + AC-ATAT---------------------------------------------GG---TGCAAT----------AAGAT-------------TTTGCAAGACAAATCATTTGTGTATATC----TAGGTACGTTTTC------AGATTTTG--------GAATC-------GTTTGATGGCTA---TCG---------------CGAAAGTGT----------TAAAA----AAAATTTTCTGTGTGGACGTAATGTCCTGAAATATGTG--ATATTTATTTC---TAGACATTAAAGGCGAAGGGTTTC-----A---------------------------------------------------------------AA-CAAA--CAAA--AAGTA-----AAAA-GTATAA-------------------------------------------------------------------------------------------TAAC-------------TTCGTTT---T----------CGA--TTACAGAATCATGCAGCGTTCGTCTTATCCTCTA------TGCCACATTGTGCGACCCAGCT
droEre2 scaffold_4690:16160547-16160791 + AC-ATAT---------------------------------------------GGTGGTGACAT----------AAGAT-------------TTTGTAAACCGAATCATTTGTGTATATC-CTTGCGGTACGTTTTC------TGATATTG--------GA-----------------------------------------------AATCT----------TTCG-----TATG-TTTCCATGCGGG------------CAAA--GTG--CTATTTATTTC---TCGACATTTAAAGCGTAGATTT-------A---------------------------------------------------------------AA---AAAAAAAA----AAT-----AATA-ATACTAA------------------------------------------------------------------------------------------TAAC-------------TTCGTTT---TCT--GTGTGTCGT--TTATAGAAACATGCAGCGTTCGTCTTATCCTCTG------TGCCACATTGTGCGACCCCGCG
droYak3 X:14097451-14097624 - AC-ATAT---------------------------------------------GG---TGACAT----------CAGAT-------------TTTGTAAACCGAATTATCTGTGTATATC-TATAAGGTACGACGATTT-------TTGTGATATTTT--------G---------------------------------------GAAATCTTTCGAGTGTGTGTG-----AAAATCTTTCGTGTAG-----------TGAAAA--CTG--ATATTTCTTTC---GAGACATTAAAAGCGTG-------------------------------------------------------------------------------------TAAA--AAGAA-----AACC-GAAAAG----------------------------------------TAA---------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409223:7194-7281 + GTCATAT---------------------------------------------GG---TGACAT----------TATCT-------------TTTGTAAGGGAAATCAATAGTTTTTTGT-TAATAGGTAAGTTTTCTA-------TTTAG--------ACGTTTTA---------------------------------------GAAGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301715:486121-486421 - GC-ATTT---------------------------------------------GC---TGACTT----------TAGGT-------------TTTGTATAACAAATCTATAGTGTTTTTT-AAATAGGTAAGTTTTTGTTTTGC--------GTTTTTT------TTGT-TCT------GTCAAAGTCA---------------AG--AATAT----------TGTC-----GTGATTGTCTG-----------AGTTCAGCACG--ATGGC----------------AACATTGGCTGCGTGGGGTGGC-----C------------------------------------ACTTAGCGTTGCAGTGGCAACATTTAA-T-----AAAAGAGTGG-----------------CA--AT-------------------------ATTTGTCTTGATATTTTATTATATC-------------------------------------AGAC-------------TTTGTTT---TCC--GT------T--TTATAGAGTCATGCAGCGCTCGACTTATCCACTGATAGTTCGTAACCTTGTGCAGTCCCGCT
droTak1 scf7180000415381:422588-422648 + GC-ATAT---------------------------------------------GG---TGACAT----------CGGAT-------------TTTGTGAAGCAAATCAATAGTTTATTTT--AATAGGTAAGTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491044:1316418-1316729 - TT-TGAC---------------------------------------------AA---TAAAC------CGTAGCTGAT-------------TTTAAAAAGCAAATACGAAATGTGTCTT--AAAAGGTGAGTTTTTTTGCTGT--------GATTTT--------A---------------------------------------AAGGACA-------------------------------------------TGCAGCAAG--ATGGC----------------AACATTG------------------------------TATGCACATGGTCATTGCAGGGTAGCCATTATTTGTCAAAGTGGCAATACTGTG-A-----CAGAAAGTGG-----------------CA--AATGTGGCCATTTGTGAAAAAAGTGGAATTTGTCTTACTGT------------------------------------------------CAATTTTGATAATAAAATTGAATT---TTT----TTGTTGC--CCACAGAATCATGCAGCGTTCGCTTCGCCCTCAAGTGGCCGGGCACATTGTGCAACCGCGTT
droRho1 scf7180000779588:679604-679674 + GC-ATAT---------------------------------------------GG---TGAAACCTTGTCGCAGCAGAT-------------TTTGTAAAGCAAATCAAAAGTTTATTTT--AAAAGGTACGTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454045:702392-702730 + GC-AAAT---------------------------------------------AG---TGACAATTCATAGCAGCGCAT-------------TTTGTCCAACAAATCAAAAGTTTTTTTTATAAAAGGTACGCCTTTTTGTTAC--------TTTTTTGGAACT-------GT------GCTAAATTTG---------------TGGGTGTGT----------TCAACAAACGAAAT----TTT------GTCGGATTGTTGCAC--TA--------GAATTC---TGAACTGAAAAGGAGTAGGTTTTT-----AAAAACATTTTACGGCCCTTTTTTTGACATATAAAACAGTGTTTGTAAATGTGAAAGTTTT----------------------------------ATTGGGA-------G-AT-A-------------------------T-------------------------------------------TTAATCAACGC-------------GTTGTTC---TCTTGGC------T--TTCCAGAGTCATGCGGCGTTCAACTTATCCACTGATTTCCTGCCGCATTGTGCGTCACCGTT
droKik1 scf7180000302698:112192-112243 + TA-TGCA--------------------T------------------------AA---A---------------------------------------AAACAAAACAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------A---------AAT--A-AAA-----AAAA-ATACA--------------------------------------------------------------------------------------------------------------------------------------------GCGAAATGCGAC---------------------------------------------
droAna3 scaffold_13266:10759084-10759166 - GT-AATA----------------TTTAT------------------------AA---T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAACTCAACGCTTTGGGGCA---------------------------------------------------------------AA--------AAA--AAAAAAGGAACAAAAAAACAG-----------AACTGCCAAAAAAC------------TTAAAG---------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396412:59162-59199 + CA-AAAA---------------------------------------------AA---AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGA--AAT--AAAAG-----AAAA-AAAACG----------------------------------------ACA---------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XL_group1e:7448020-7448095 + AA-AGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACATAATAA---TACAAATTAAAAAAGGAATGATAA-----A---------------------------------------------------------------AA-TAAA--AAAA--AAAAA-----TAAC-AAAAAATA-------A-TA-G-------------------------CAA---------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_13:31935-31996 + TT-CTAA---------------------------------------------AA---A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTTTTTT---TTAATGTGAACT-----------------A---------------------------------------------------------------AACAAAGA--AAA--AAAAG-----AAAA-AAACAAA----------------------------------------GA---------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004909:8721568-8721626 + TT-TATT----------------TCTGG------------------------AT---T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-T--TTATACTCTC-GC------------------------------------------------------------------AC-AAAAA--AAA--AAAAA-----AAAA-AAACAAA---------------------------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13047:11644395-11644571 - CA-TTAGCATGCATTTCAAAAGTGCAAGTTTCGATTTGTACCAGCAAAAAATAG---------------------------------------------------------------------------------------------------------AAAAG---------------------------------------AAAAAAAAA----------TGTG-----AAAATTTCTTGTGCGAC------------AAAA--AAA--AAATTTAT-GC---AAGAAATGTGAAACGTAGGAAC-----------------------------------------------------GACAACGGCAATGTACAAAG-----AAAAGAAAGACAA-----AAAA-AAAAAA---------A-AA-A-------------------------TAC---------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:11117944-11118125 - CA-ATTT---------------------------------------------AA----------------------ATTATTTAAAATACATTTGTAATTA-----ATTTTTATATATT-TTTATATTAGGTTTCT---------------------T------TTCACTAT------AAT-----ACACAATTCTGATATTGCT------CTTGAAATGT-AGGT-----AAT--ATTTTGTTTGGG------------AATA--ATG--AAATCTATT-------------AAAAAAATCTTTGT-------A---------------------------------------------------------------AAATAAAA--AAA--AAAAT-----AAAA-AAAAAA----------------------------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15203:7450701-7450820 + AC-AATT---------------------------------------------TT----GGCAC----------TTGGA-------------GACATTAAACAAAACTTT--------------------------------------------------------------------------------------------------------------------------------------------ATTTCATGCTCACAC--TTA--AGTCGTACTTCTAAAATAAATGTAAAACA----ATTT------C---------------------------------------------------------------TC-AAAA--AAAA----AAA-----AAAC-AAACAAAG-------A-AA-T-------------------------TCG---------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AC-ATAT---------------------------------------------GG---TGAAAC----------AAGAT-------------TTTGTAAACAAAATCATTTGTATATATC----TAGGTACGTTTTA------CGATTTTG--------GAATCG---------------------------------------CGGAAATGT----------TACA-----AAAATTTTCTGTGTGGGCATTACGTCCTGAAAA--GTG--ATATTTATTTC---TAGACATAAAAAGCGTAGAGTTTC-----A---------------------------------------------------------------AC-AAAA--AAAA--AAAAA-----AAAA-AAAAAAA----------AAATGCGACACACC------------TGAAGGTACGTACTATCCGACAGACGCTAGCCCTGGATAG-------GC-----GGAC-------------GTTGTGCGGCACGCAGA------TTCAAACAGAATCATGCAGCGTTCGTCTTATCCTCTA------CGCCACATTGTGCGACCCAGCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................................................AAA--AAAAA-----AAAA-AAAAAAA----------AAA......................................................................................................................................................................................22207.701540001540000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AA--AAAA--AAAAA-----AAAA-AAAAA.....................................................................................................................................................................................................20205.001000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................AAAA--AAAA--AAAAA-----AAAA-AAAAAAA----------AA.......................................................................................................................................................................................26202.3547000470000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AAA--AAAAA-----AAAA-AAAAAAA----------AA.......................................................................................................................................................................................21201.0521000000000000210000
..............................................................................................................................................................................................................................................................................................................................................................................................AAA--AAAA--AAAAA-----AAAA-AAAAAAA----------AA.......................................................................................................................................................................................25200.8517000000000000170000
...............................................................................................................................................................................................................................................................................................................................................................................................AA--AAAA--AAAAA-----AAAA-AAAAAAA----------AAA......................................................................................................................................................................................25200.6012120000000000000000
....................................................................................................................................................................................................................................................................................................................C-----A---------------------------------------------------------------AC-AAAA--AAAA--AAAAA-----AAAA-AAAAAAA----------.........................................................................................................................................................................................2830.33100000000000001000
..........................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------------AC-AAAA--AAAA--AAAAA-----AAAA-AAAAAAA----------AA.......................................................................................................................................................................................2980.25200010000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................AAAA--AAAA--AAAAA-----AAAA-A.........................................................................................................................................................................................................18200.20400400000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AA--AAAAA-----AAAA-AAAAAAA----------AAAT.....................................................................................................................................................................................22200.20400020000000020000
....................................................................................................................................................................................................................................................................................................................................................................................................AAA--AAAAA-----AAAA-AAAAAAA----------AAAT.....................................................................................................................................................................................23200.15300000000000003000
...................................................................................................................................................................................................................................................................................................................................................................................................AAAA--AAAAA-----AAAA-AAAAAAA----------AAAT.....................................................................................................................................................................................24200.10200000000000002000
..........................................................................................................................................................................................................................................................................................................................................................................................AC-AAAA--AAAA--AAAAA-----AAAA-AAA.......................................................................................................................................................................................................22200.10200100000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................C-AAAA--AAAA--AAAAA-----AAAA-AAAAA.....................................................................................................................................................................................................23200.10200010000000001000
..........................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------------AC-AAAA--AAAA--AAAAA-----AAAA-AAAAAAA----------A........................................................................................................................................................................................28110.09100000000000001000
....................................................................................................................................................................................................................................................................................................................C-----A---------------------------------------------------------------AC-AAAA--AAAA--AAAAA-----AAAA-..........................................................................................................................................................................................................21150.07100010000000000000
..........................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------------AC-AAAA--AAAA--AAAAA-----AAAA-AAAAAA....................................................................................................................................................................................................26180.06100000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................AC-AAAA--AAAA--AAAAA-----AAAA-AAAA......................................................................................................................................................................................................23200.05100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AAAA--AAAA--AAAAA-----AAAA-..........................................................................................................................................................................................................17200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................AAAA--AAAAA-----AAAA-AAAAAAA----------AAATG....................................................................................................................................................................................25200.05100000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................AAAA--AAAA--AAAAA-----AAAA-AAAAAAA----------AAA......................................................................................................................................................................................27200.05100000010000000000
..........................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------------AC-AAAA--AAAA--AAAAA-----AAAA-AAAAA.....................................................................................................................................................................................................25200.05100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AAAA--AAAA--AAAAA-----AAAA-AAAAAAA----------A........................................................................................................................................................................................25200.05100000000010000000
..........................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------------AC-AAAA--AAAA--AAAAA-----AAAA-AAA.......................................................................................................................................................................................................23200.05100000000000001000
droSec2
AC-ATAT---------------------------------------------GG---TGAAAT----------AAGAT-------------TTTGTAAACAAAATCATTTGTATATATC----TAGGTACGTTTTA------CGATTTCG--------GAATCG---------------------------------------CGGAAGTGT----------TACA-----AAAATTTTCTGTGTGGGCATTACGTCCTGAAAA--ATG--ATATTTATTTC---TAGACATAAAAAGCGTAGAGTTTC-----A---------------------------------------------------------------AC-AAAA--AAAA--AAAAA-----AAAA-AAAAAAA----------AA-C-------------------------GCG---------------------------------TGCGTCGTATAA---TAAC-------------TTCGTTT---TCG----TTTTCGG--TTACAGAATCATGCAGCGTTCGTCTTATCCTCTA------CGCCACATTGTGCGACCCAGCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................................................................................................................................AAAA--AAAAA-----AAAA-AAAAAAA----------A........................................................................................................................................................................................21201.402828000
...............................................................................................................................................................................................................................................................................................................................................................................................AA--AAAA--AAAAA-----AAAA-AAA.......................................................................................................................................................................................................18200.901818000
....................................................................................................................................................................................................................................................................................................................C-----A---------------------------------------------------------------AC-AAAA--AAAA--AAAAA-----AAAA-AAA.......................................................................................................................................................................................................24130.0811000
..........................................................................................................................................................................................................................................................................................................................................................................................AC-AAAA--AAAA--AAAAA-----AAAA-A.........................................................................................................................................................................................................20200.0511000
dm3
AC-ATAT---------------------------------------------GG---TGCAAT----------AAGAT-------------TTTGCAAGACAAATCATTTGTGTATATC----TAGGTACGTTTTC------AGATTTTG--------GAATC-------GTTTGATGGCTA---TCG---------------CGAAAGTGT----------TAAAA----AAAATTTTCTGTGTGGACGTAATGTCCTGAAATATGTG--ATATTTATTTC---TAGACATTAAAGGCGAAGGGTTTC-----A---------------------------------------------------------------AA-CAAA--CAAA--AAGTA-----AAAA-GTATAA-------------------------------------------------------------------------------------------TAAC-------------TTCGTTT---T----------CGA--TTACAGAATCATGCAGCGTTCGTCTTATCCTCTA------TGCCACATTGTGCGACCCAGCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................TTC------AGATTTTG--------GAATC-------GTTTGATGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..............................................................................................................................................................................................................AAGTGT----------TAAAA----AAAATTTTCT.................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................TTTC------AGATTTTG--------GAATC-------GTTTGATGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................TTTGATGGCTA---TCG---------------CGAAAGTGT----------T...................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---T----------CGA--TTACAGAATCATGCAGCGTT..........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AC-ATAT---------------------------------------------GGTGGTGACAT----------AAGAT-------------TTTGTAAACCGAATCATTTGTGTATATC-CTTGCGGTACGTTTTC------TGATATTG--------GA-----------------------------------------------AATCT----------TTCG-----TATG-TTTCCATGCGGG------------CAAA--GTG--CTATTTATTTC---TCGACATTTAAAGCGTAGATTT-------A---------------------------------------------------------------AA---AAAAAAAA----AAT-----AATA-ATACTAA------------------------------------------------------------------------------------------TAAC-------------TTCGTTT---TCT--GTGTGTCGT--TTATAGAAACATGCAGCGTTCGTCTTATCCTCTG------TGCCACATTGTGCGACCCCGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
AC-ATAT---------------------------------------------GG---TGACAT----------CAGAT-------------TTTGTAAACCGAATTATCTGTGTATATC-TATAAGGTACGACGATTT-------TTGTGATATTTT--------G---------------------------------------GAAATCTTTCGAGTGTGTGTG-----AAAATCTTTCGTGTAG-----------TGAAAA--CTG--ATATTTCTTTC---GAGACATTAAAAGCGTG-------------------------------------------------------------------------------------TAAA--AAGAA-----AACC-GAAAAG----------------------------------------TAA---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
GTCATAT---------------------------------------------GG---TGACAT----------TATCT-------------TTTGTAAGGGAAATCAATAGTTTTTTGT-TAATAGGTAAGTTTTCTA-------TTTAG--------ACGTTTTA---------------------------------------GAAGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GC-ATTT---------------------------------------------GC---TGACTT----------TAGGT-------------TTTGTATAACAAATCTATAGTGTTTTTT-AAATAGGTAAGTTTTTGTTTTGC--------GTTTTTT------TTGT-TCT------GTCAAAGTCA---------------AG--AATAT----------TGTC-----GTGATTGTCTG-----------AGTTCAGCACG--ATGGC----------------AACATTGGCTGCGTGGGGTGGC-----C------------------------------------ACTTAGCGTTGCAGTGGCAACATTTAA-T-----AAAAGAGTGG-----------------CA--AT-------------------------ATTTGTCTTGATATTTTATTATATC-------------------------------------AGAC-------------TTTGTTT---TCC--GT------T--TTATAGAGTCATGCAGCGCTCGACTTATCCACTGATAGTTCGTAACCTTGTGCAGTCCCGCTSizeHit CountTotal NormTotal
No Reads
droTak1
GC-ATAT---------------------------------------------GG---TGACAT----------CGGAT-------------TTTGTGAAGCAAATCAATAGTTTATTTT--AATAGGTAAGTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TT-TGAC---------------------------------------------AA---TAAAC------CGTAGCTGAT-------------TTTAAAAAGCAAATACGAAATGTGTCTT--AAAAGGTGAGTTTTTTTGCTGT--------GATTTT--------A---------------------------------------AAGGACA-------------------------------------------TGCAGCAAG--ATGGC----------------AACATTG------------------------------TATGCACATGGTCATTGCAGGGTAGCCATTATTTGTCAAAGTGGCAATACTGTG-A-----CAGAAAGTGG-----------------CA--AATGTGGCCATTTGTGAAAAAAGTGGAATTTGTCTTACTGT------------------------------------------------CAATTTTGATAATAAAATTGAATT---TTT----TTGTTGC--CCACAGAATCATGCAGCGTTCGCTTCGCCCTCAAGTGGCCGGGCACATTGTGCAACCGCGTTSizeHit CountTotal NormTotal
No Reads
droRho1
GC-ATAT---------------------------------------------GG---TGAAACCTTGTCGCAGCAGAT-------------TTTGTAAAGCAAATCAAAAGTTTATTTT--AAAAGGTACGTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GC-AAAT---------------------------------------------AG---TGACAATTCATAGCAGCGCAT-------------TTTGTCCAACAAATCAAAAGTTTTTTTTATAAAAGGTACGCCTTTTTGTTAC--------TTTTTTGGAACT-------GT------GCTAAATTTG---------------TGGGTGTGT----------TCAACAAACGAAAT----TTT------GTCGGATTGTTGCAC--TA--------GAATTC---TGAACTGAAAAGGAGTAGGTTTTT-----AAAAACATTTTACGGCCCTTTTTTTGACATATAAAACAGTGTTTGTAAATGTGAAAGTTTT----------------------------------ATTGGGA-------G-AT-A-------------------------T-------------------------------------------TTAATCAACGC-------------GTTGTTC---TCTTGGC------T--TTCCAGAGTCATGCGGCGTTCAACTTATCCACTGATTTCCTGCCGCATTGTGCGTCACCGTTSizeHit CountTotal NormTotal
No Reads
droKik1
TA-TGCA--------------------T------------------------AA---A---------------------------------------AAACAAAACAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------A---------AAT--A-AAA-----AAAA-ATACA--------------------------------------------------------------------------------------------------------------------------------------------GCGAAATGCGAC---------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GT-AATA----------------TTTAT------------------------AA---T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAACTCAACGCTTTGGGGCA---------------------------------------------------------------AA--------AAA--AAAAAAGGAACAAAAAAACAG-----------AACTGCCAAAAAAC------------TTAAAG---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------------AA--------AAA--AAAAAAGGAACAAAAAA........................................................................................................................................................................................................2311.001001000
....................................................................................................................................................................................................................................................................................................................................................................................................AAA--AAAAAAGGAACAAAAA.........................................................................................................................................................................................................1960.332020000
..........................................................................................................................................................................................................................................................................................................................................................................................AA--------AAA--AAAAAAGGAACAA............................................................................................................................................................................................................1850.201010000
.........................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAGGAACAAAAAAACAC-----------T........................................................................................................................................................................................22130.081010000
....................................................................................................................................................................................................................................................................................................................................................................................................AAA--AAAAAAGGAACAAAAAAC.......................................................................................................................................................................................................21170.061010000
...........................................................................................................................................................................................................................................................................................................................................................................................A--------AAA--AAAAAAGGAACAAAAAAAA......................................................................................................................................................................................................23200.051010000
...........................................................................................................................................................................................................................................................................................................................................................................................A--------AAA--AAAAAAGGAACAAAC..........................................................................................................................................................................................................19200.051010000
droBip1
CA-AAAA---------------------------------------------AA---AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGA--AAT--AAAAG-----AAAA-AAAACG----------------------------------------ACA---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
AA-AGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACATAATAA---TACAAATTAAAAAAGGAATGATAA-----A---------------------------------------------------------------AA-TAAA--AAAA--AAAAA-----TAAC-AAAAAATA-------A-TA-G-------------------------CAA---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TT-CTAA---------------------------------------------AA---A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTTTTTT---TTAATGTGAACT-----------------A---------------------------------------------------------------AACAAAGA--AAA--AAAAG-----AAAA-AAACAAA----------------------------------------GA---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TT-TATT----------------TCTGG------------------------AT---T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-T--TTATACTCTC-GC------------------------------------------------------------------AC-AAAAA--AAA--AAAAA-----AAAA-AAACAAA---------------------------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CA-TTAGCATGCATTTCAAAAGTGCAAGTTTCGATTTGTACCAGCAAAAAATAG---------------------------------------------------------------------------------------------------------AAAAG---------------------------------------AAAAAAAAA----------TGTG-----AAAATTTCTTGTGCGAC------------AAAA--AAA--AAATTTAT-GC---AAGAAATGTGAAACGTAGGAAC-----------------------------------------------------GACAACGGCAATGTACAAAG-----AAAAGAAAGACAA-----AAAA-AAAAAA---------A-AA-A-------------------------TAC---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................GAAC-----------------------------------------------------GACAACGGCAATGT............................................................................................................................................................................................................................................1811.001000001000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................TGAAACGTAGGAAC-----------------------------------------------------GACAACGG..................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
CA-ATTT---------------------------------------------AA----------------------ATTATTTAAAATACATTTGTAATTA-----ATTTTTATATATT-TTTATATTAGGTTTCT---------------------T------TTCACTAT------AAT-----ACACAATTCTGATATTGCT------CTTGAAATGT-AGGT-----AAT--ATTTTGTTTGGG------------AATA--ATG--AAATCTATT-------------AAAAAAATCTTTGT-------A---------------------------------------------------------------AAATAAAA--AAA--AAAAT-----AAAA-AAAAAA----------------------------------------AAA---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AC-AATT---------------------------------------------TT----GGCAC----------TTGGA-------------GACATTAAACAAAACTTT--------------------------------------------------------------------------------------------------------------------------------------------ATTTCATGCTCACAC--TTA--AGTCGTACTTCTAAAATAAATGTAAAACA----ATTT------C---------------------------------------------------------------TC-AAAA--AAAA----AAA-----AAAC-AAACAAAG-------A-AA-T-------------------------TCG---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 04:38 PM