ID:

dsi_27658

 Coordinate:

2r:10972724-10972981 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.1 -27.9 -27.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATGTCACACTTTCTGAACGGACAGTAAGTTCCAGGCTTACTTTTCGCAGTGTAAGCATACATGACAGCTTGTGAGGTTGGTAGGAGCACTCAACAATTACTTAGCACCTCGGTGTCAAGGGGGTCTCGTCTTTCAGCATTCTCATTAATTACACGCCGCACTAATTAGGCTGTAACGGAATAGCGAAAGGATTACCCGGAGTATCACCTGGTTGCCGGTCCTATGATTTACTCTGCTTTAGCCCGCTCTAATCTGCCATCCGTAATGCTTTCGCCAAATTTACGGCTATACTTCTGGTATTTCCCCAGTTGTCTTGTCACGCACGAGCGCTGTTCAAACAAAATCGAGTGGAATCGAG
*****************************************************************************.((((((((.((((........(((.((((....)))).))).))))))).((((((.(((((((......(((((.(((..........)))))))).))))).)))))))).))))).***************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
...........TCTGAACGGACAGTAAGTTCCAGGCT................................................................................................................................................................................................................................................................................................................................. 26 0 1 29.00 29 27 2 0 0 0
..........TTCTGAACGGACAGTAAGTTCCAGGCT................................................................................................................................................................................................................................................................................................................................. 27 0 1 14.00 14 14 0 0 0 0
...........TCTGAACGGACAGTAAGTTCCAGGC.................................................................................................................................................................................................................................................................................................................................. 25 0 1 5.00 5 5 0 0 0 0
..........................................................................................................................................................................TGTAACGGAATAGCGAAAGGATTACCC................................................................................................................................................................. 27 0 1 5.00 5 5 0 0 0 0
...........TCTGAACGGACAGTAAGTTCCAGGCA................................................................................................................................................................................................................................................................................................................................. 26 1 1 4.00 4 4 0 0 0 0
.............TGAACGGACAGTAAGTTCCAGGCTTA............................................................................................................................................................................................................................................................................................................................... 26 0 1 3.00 3 3 0 0 0 0
.............................................................................TGGTAGGAGCACTCAACAATTACTT................................................................................................................................................................................................................................................................ 25 0 1 3.00 3 3 0 0 0 0
..............................................................................................................................................................CACTAATTAGGCTGTAACGGAATAGCGA............................................................................................................................................................................ 28 0 1 3.00 3 3 0 0 0 0
.................................................................................................................................................................TAATTAGGCTGTAACGGAATAGCGAA........................................................................................................................................................................... 26 0 1 3.00 3 3 0 0 0 0
.............TGAACGGACAGTAAGTTCCAGGCTT................................................................................................................................................................................................................................................................................................................................ 25 0 1 2.00 2 2 0 0 0 0
.............................................................................................................................................................................AACGGAATAGCGAAAGGATTACCCGG............................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0
.........TTTCTGAACGGACAGTAAGTTCCAGGCT................................................................................................................................................................................................................................................................................................................................. 28 0 1 2.00 2 2 0 0 0 0
.................................................................................................................................................................TAATTAGGCTGTAACGGAATAGA.............................................................................................................................................................................. 23 1 1 2.00 2 2 0 0 0 0
.............................................................................................................................................................GCACTAATTAGGCTGTAACGG.................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0
....................................................................................................................................................................TTAGGCTGTAACGGAATAGCGAAAGGAT...................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0
....................................................................................................................................................................................................................TGCCGGTCCTATGATTCACTCGGC.......................................................................................................................... 24 2 1 2.00 2 2 0 0 0 0
..........................................................................................................................................................................TGTAACGGAATAGCGAAAGGATTACC.................................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0
............................................................................................................TCGGTGTCAAGGGGGTCTCGTCA................................................................................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
...........TCTGAACGGACAGTAAGTTCCAGGCTA................................................................................................................................................................................................................................................................................................................................ 27 1 1 1.00 1 1 0 0 0 0
............................................................................................................................................................CGCACTAATTAGGCTGTAACGGAATAG............................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
.TGTCACACTTTCTGAACGGACAGTA............................................................................................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................CGGAGTATCACCTGGTTGCCGGTC.......................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................CGCACTAATTAGGCTGTAACGGAAA................................................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................................GGAGTATCACCTGGTTGCCGGTCCTA....................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................TAGGCTGTAACGGAATAGCGAAAGGA....................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................CTACTTAGGCTGTAACGGAAT................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................TAATTAGGCTGTAACGGAATAGAA............................................................................................................................................................................. 24 2 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................TGTAACGGAATAGCGAAAGGATTAC................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................................GGTCCTATGATTCACTCGGCTTTAGCA................................................................................................................... 27 3 1 1.00 1 1 0 0 0 0
.TGTCACACTTTCTGAACGGACAGTAAG.......................................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................TGTAACGGAATAGCGAAAGGATTAAA.................................................................................................................................................................. 26 2 1 1.00 1 1 0 0 0 0
......CACTTTCTGAACGGACAGTAA........................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.................................................................................AGGAGCACTCAACAATTACTTAGCAC........................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................................................CCTATGATTCACTCGGCTTTA...................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0
.............TGAACGGACAGTAAGTTCCAGGCTTAC.............................................................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................................GGAATATCACCTGGTTGCCGGTCCTA....................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................TGTAACGGAATAGCGAAAGGATTA.................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................TAATTAGGCTGTAACGGAATAGCGAAAA......................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0
.............TGAACGGACAGTAAGTTCCAGGC.................................................................................................................................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................CTAACTAGGCTGTAAC...................................................................................................................................................................................... 16 1 1 1.00 1 0 0 1 0 0
.....................................................................................................................................CAGCATTCTCATTAATTACACGC.......................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................CGGAGTATCACCTGGTTGCCGGT........................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
...........TCTGAACGGACAGTAAGTTCCGGGCT................................................................................................................................................................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................ACGCACGAGCGCTGTTCAAACAAAAT.............. 26 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................CGCCGCACTAATTAGGCTGTAACGGAAA................................................................................................................................................................................. 28 1 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................................................AGCCCGCTCTAATCTGCCATCCGTAAAA........................................................................................... 28 2 1 1.00 1 1 0 0 0 0
................................................................................................................................................................CTAATTAGGCTGTAACGGAAT................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
...........TCTAAACGGACAGTAAGTTCCAGGC.................................................................................................................................................................................................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................................................................................................TACGGCCATACTTCTGGTATTT........................................................ 22 1 1 1.00 1 1 0 0 0 0
..........TTCTGAACGGACAGTAAGTTCCAGGC.................................................................................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
...........................................................................................................CTCGGTGTCAAGGGGGTCTCGT..................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................TCAAACAAAATCGAGTGGAATCGAG 25 0 1 1.00 1 1 0 0 0 0
....................................................................................................TTGGCACCTCGATGTCCAGGG............................................................................................................................................................................................................................................. 21 3 3 0.33 1 0 0 1 0 0
.......................................................................TGGGGTTGGTAGGAGCACAAAA......................................................................................................................................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0
............................................................................................................................................................................TAACGGAGTAGTGAAAGG........................................................................................................................................................................ 18 2 4 0.25 1 0 0 1 0 0
...........................................................................................................................................................................TTAAGGGAATAACGAAAGGAT...................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 1 0
........................................................................................................................................................................................................................................................................................................................CTTGTCACGCTCGAG............................... 15 1 10 0.10 1 0 0 0 1 0
............................................................................................................................................................................TAAGGAAATAGCGGAAGGAT...................................................................................................................................................................... 20 3 12 0.08 1 0 0 0 0 1
...........................................................................................................................................................................................................................................................................................................................GTAACGCACGCGCGCT........................... 16 2 14 0.07 1 0 0 0 0 1
.................................................................................................................................................................TAACTAGGCTGTAACTGAC.................................................................................................................................................................................. 19 3 17 0.06 1 0 0 0 1 0
...............................................................................................................................................................................GGGAATAACGAAAGGAT...................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

TACAGTGTGAAAGACTTGCCTGTCATTCAAGGTCCGAATGAAAAGCGTCACATTCGTATGTACTGTCGAACACTCCAACCATCCTCGTGAGTTGTTAATGAATCGTGGAGCCACAGTTCCCCCAGAGCAGAAAGTCGTAAGAGTAATTAATGTGCGGCGTGATTAATCCGACATTGCCTTATCGCTTTCCTAATGGGCCTCATAGTGGACCAACGGCCAGGATACTAAATGAGACGAAATCGGGCGAGATTAGACGGTAGGCATTACGAAAGCGGTTTAAATGCCGATATGAAGACCATAAAGGGGTCAACAGAACAGTGCGTGCTCGCGACAAGTTTGTTTTAGCTCACCTTAGCTC
*****************************************************************************************************************************************************************.((((((((.((((........(((.((((....)))).))).))))))).((((((.(((((((......(((((.(((..........)))))))).))))).)))))))).))))).***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
............................................................................................................................................................................ATTCCCTTATTGCTTTCCTA...................................................................................................................................................................... 20 2 2 5.00 10 0 9 0 0 0 1 0
..............................................................................................................................................................................................................GGACCAACGGCCAGGATACTA................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
.............................................................................................................................AGCAGAAAGTCGTAAGAGTAA.................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
..............................................................................................................................................................................................................GGACCAACGGCCAGGATACTAA.................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................GAGCAGAAAGTCGTAAGAGTA..................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0
....................................................................................................................................................................................................................ACGGCCAGGATACTAAGTGAGC............................................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................AGCAGAAGTTCTTAAGAGT...................................................................................................................................................................................................................... 19 3 20 1.00 20 0 0 20 0 0 0 0
...................................................................................................................................................................................................................TACGGCCAGGATACTAAGTGAG............................................................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................ATTCCCTTATTGCTTTCCTAG..................................................................................................................................................................... 21 3 2 1.00 2 0 2 0 0 0 0 0
..............................................................................................................................................................................................................................................ATCGGGCGAGATTAGACGGTA................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................TATAAAGGGGTCAACAGAACAGT....................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................GAGCAGAAAGTCGTAAGAGTAAT................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................TCGTGAGTTGTTAGTGAAT............................................................................................................................................................................................................................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................................................................................................................................ACGGCCAGGATACTAAGTGAG............................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................CAGAGCAGAAAGTCGTAAGAGTAATT.................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................CCCCCAGAGCAGAAAGTCGTA........................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................CGGGCGAGATTAGACGGTAGG................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................AGGATAATAAATGAGA............................................................................................................................ 16 1 2 0.50 1 0 0 0 0 0 0 1
...........................................................................................................................................................................AATTCCCTTATTGCTTTCCTA...................................................................................................................................................................... 21 3 4 0.50 2 0 2 0 0 0 0 0
.......................................................................................................................................................................................................................................................................TTAGGAAAGGGGTTTCAATGC.......................................................................... 21 3 2 0.50 1 0 0 0 0 1 0 0
................................................................................................................................................................................CCTTATTGCTTTCCTA...................................................................................................................................................................... 16 1 6 0.33 2 0 2 0 0 0 0 0
..............................................................................................................................................................................TCCCTTATTGCTTTCCTA...................................................................................................................................................................... 18 2 10 0.20 2 0 2 0 0 0 0 0
............................................................................................................................AAGCAGAAATTCTTAAGAGTA..................................................................................................................................................................................................................... 21 3 6 0.17 1 0 0 1 0 0 0 0
.............................................................................................................................AGCAGAAGTTCTTAAGAGTA..................................................................................................................................................................................................................... 20 3 12 0.17 2 0 0 2 0 0 0 0
............................................................................................................................................................................................................................................................................................................AGGGGGTTACCAGAACAGTG...................................... 20 3 8 0.13 1 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................................GGATTAGACGGTAGCC................................................................................................ 16 2 20 0.10 2 0 0 0 0 2 0 0
......................................................................................................................................................................................................................................................................................................ACCGTCAAGGTGTCAACAGA............................................ 20 3 10 0.10 1 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................................................AGGCAGTCCGAAAGCGG................................................................................... 17 2 11 0.09 1 0 0 0 0 0 1 0
..........................TCAAGGTGCGAGTGAGAAGC........................................................................................................................................................................................................................................................................................................................ 20 3 16 0.06 1 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................................................................................................................ACAGGGCGTGCTCGCGCT.......................... 18 3 17 0.06 1 0 0 0 0 1 0 0
................................................................................................................................................................................CCTTATTGCTTTCCT....................................................................................................................................................................... 15 1 18 0.06 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................GAGGATAATAAATGAGA............................................................................................................................ 17 2 19 0.05 1 0 0 0 0 0 1 0
.................................................................................................................................................................................................................................................................................GGTTTCAATGCCTATATAA.................................................................. 19 3 20 0.05 1 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................TTAATAAAGCGGTTTAAA............................................................................. 18 2 20 0.05 1 0 0 1 0 0 0 0
............................................................................................................................................................................................CCAAATGGGCCTCTTA.......................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0
..............................................................................................................................................................................TCCCTTATTGCTTTCCTAG..................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:10972674-10973031 - dsi_27658 ATGTCACACTTTCTGAACGGACAGTAAGTTCCAGGCTTAC-----------TTTTCGCAGTGTAAGCATACATGACAGCTTGTGAG---------GTTG-GTAGGA------GCACTCAACAATTACTTAG----------------------CACCTCGGTGTCA-------------------------A--G--GGGGTCTCGTCTTTCA-GCATTCTCATTAATTACACGCCGCACTAATTAGGCTGTAACGGAATAGCGAAAGGA-TT-ACCCGGAGTA---TCACCTGGTTG-----------CCGGTCC--T---ATGATTTA-----CTCTG-CTTTAG-CCCGCTCTAATCTGCCAT-CCGTAATGCTTT--CGCCAAATTTACGGCTATACTTCTGGTATTTCCCCAG-------TTGTCTTGTCACGCACGAGCG----------CTGTT---CAAACAAA-----ATCGAGTGGAATCGAG------------------------
droSec2 scaffold_1:7770752-7771109 - ATGTAACACTTTGTGAACGGACAGTAAGTTCCAGGCTTAC-----------TTTTCGCAGTGTAAGCATACATGACAGCTAGTGGG---------GTTG-GTAGGA------GCACTCAACAATTACTTAG----------------------CACCTCGGTGTCA-------------------------A--G--GGGGTCTCGTCTTTCA-GCATTCTCATTAATTACACGCCGCACTAATTAGGCTGTAATGGAATAGCGAAAGGA-TT-ACCCGGAGTA---TCACCTGGTTG-----------CCGGTCC--T---ATGATTCA-----CTCGG-CTTTAG-CCCGCTCTAATCTGCCAT-CCGTAATGCTTT--CGCCAAATTTACGGCTATACTTCTGGTATTTCCCCAG-------TTGTCTTGTCACGCGCGAGCG----------CTGTT---CAAACAAA-----ATCGAGTGGAATCGAG------------------------
dm3 chr2R:10263037-10263393 - ATGTAACACTTTGCGAACGAACACTAAGTTCCAGGGTTAC-----------TTTTCGCAGTGTAAGCATGCATGACAGCTAGTG-----------GTTGGGTATGG------GCACTCAACAATTACTTAG----------------------CACCTCGGTGTCA-------------------------A--G--GGGGTCTCGTCTTTCA-GCATTCTCATTAATTACACGCCGCACTAATTAGGCTGTTACAGAATAGCGAAAGGA-TT-ACCCGGAGTA---TCACCTGGTTG-----------CCGGTCC--T---ATGATTCA-----TTCAG-CTTTAG-CCGGCGCTAATCTGCCAT-CCGTAATGCTTT--CGCCAAATTTACGGCAATACTTCTGGTATTTCCCCAG-------TTGTCTTGTCACGCACGAGCG----------CTGTT---CAAATAAA-----ATCGAGTGGAATCGAG------------------------
droEre2 scaffold_4845:15577884-15578247 + ACGTGACAGTCTTTGAG----CAGCAAATGCCCAGCCTAC-----------TTCTCGCAGTGTACACATGCATGGCAGCTGGTG-----------GTTG-GTAGGA------GCACTCAACAATTACTTAGCTGGC---------ATCTTCAACACCTCGGTGTCA-------------------------A--G---GGGTCTCGTCTTTCA-GCATTCTCATTAATTACACGCCGCACTAATTAGGCTGTAACGGCATGGGGAAAGGA-TT-ACTCGGAGCA---TCACCTGGTTG-----------CCGTTCC--A---GTGAATCA-----CTCGG-TTCTAG-CCCGCGCTTATCTGCCAT-CCGTAATGCTTTTTCGCCCAATTTGCGGCAATACTTCTGGTATTTCCCCAA-------CT--CTTGTCACGCACCAGCT----------CTGCC---CAAATAAA-----ATCGAGTGGAATCGAG------------------------
droYak3 2R:10200541-10200903 - AGGTGGCAGCTTTTGAA----CAGTGAACTCCAAGCCCAC-----------TTCTCGCAGTGTAAACATGCATGACAGCTGGTG-----------GTTG-GTGGTA------GCACTCAACAATTACTTAGCTGGC---------ATCTTCAACACCTCGGTGTCA-------------------------A--G--GGGGTCTCGTCTTTCA-GCATTGCCATTAATTACACGCCGCACTAATTAGGCTGTAACGGAATAGCGAAAGGA-TT-ACACGGAGCA---TCACCTGGTTG-----------CCGGTTC--T---ATGATTCA-----CTCGG-CTCTAG-TCAGTGTTAATCTGCCAT-CGGTAATGGTTT--TGCCCAATTTACGGCTATACTTCTGGTATTTCCCCAG-------TT--CTTGTCACGCACGAGCG----------CTGCT---CGAATAAA-----ATCGAGTGGCATCGAG------------------------
droEug1 scf7180000409462:2577007-2577335 + AT-------------------------------------------------TTCTCTCAGTGTAGCCACACATGACAGCTGGTG----------------GTGTGA------GCACTCAACAATTACTTAGCTGGC---------ATCTTCAACACTTCGGTGCCA-------------------------TAGG--GGGGTCTCGTCTTTCA-GCATTCTCATTAATTACACGCCGCACTAATTAGGATGTAACGGAATAGCGAAAGGA-TT-ATCCGCATCC---TCACCTGGATG------------------GAT---GTGAGTCA-----CCCGAACTTTAGCCCCGCTTTAATCTCTCAT-CCATATTATTTT--TGCCCAATTTGCGTCA--GCTTCTGGTATTTCCCCAAACAAAAATT--CTTGTCACGCACGAGCG----------CTGTC---CAAATAAA-----ATCGAGTGGAATCGAG------------------------
droBia1 scf7180000301754:2389763-2390088 + ---------------------------------------------------TTCTGGCAGTGTACACATGCATGACAGCTGGTG----------------GTGGGA------GCACTCAACAATTACTTAGCAGGC---------ATCTTCAACACTTCGGTGCCA-------------------------G--G--GGGGTCTCGTCTTTCA-GCATTCTCATTAATTACTCGCCGCACTAATTAGGCTGTAACGGAATAGCGAAAGGA-TT-ATCCGCAGCAGCCTCACCTGGAAG-----------CCTTC--GAT---TTGAGTCA-----CCCGG-CTTTGG-CCCGCTTTAATCT-CCGT-CCGTATTATTTG--TGCCCCATTTGCGCCA--ACTTCTGGTGTTTCCCCAA-------AT--CTTGTCACGCACGAGCG----------CTGCC---CAAACAAAAAA--AATTAATAGAATCGAG------------------------
droTak1 scf7180000415272:109936-110278 - AT-------------------------------------------------TTCTCGCAGTGTACACATGCATGACAGCTGGTG----------------GTGGGA------GCACTCAACAATTACTTAGCTGGCATCCTGAACATCCTCAACACCTCGGTGCCA-------------------------T--G--AGGGTCTCGTCTTTCA-GCATTCTCATTAATTACACGCCGCACTAATTAGGCTGTAACGGAATAGCGAAAGGA-TT-ATCCGCAGCCTCATCACCTGCAAG-----------CCCTTG--AT---ATGAGTCA-----CTCAG-CTTTGG-CCCGCTTTAATCTCGCAT-CCATATTATTTT--TGCCCAATTTGCGCCC--ATTTCTGGTATTTCCCCAA-------TT--CATGTCACGCACGAGCG----------CTGCTTGGAAAATAAAAAAGAATCGAGTGGAATCGAG------------------------
droEle1 scf7180000491349:600210-600532 + ---------------------------------------------------TTCTCCCAGTGCACCCACACATGTCAGTTGGTG----------------GTGGGA------GCACTCAACAATTACTTAGCTGGC---------ATCTTCAACGCCTCGGTGCCT-------------------------C------TGGTCTCGCCTTTCATGCATTATCATTAATTACACGCCGCTCTAATTAGGATGTAACGGAATAGCGAAAGGA-TT-ATCCGCTGCT---TTACCTGAATG-----------CCTTC--GAT---GTGAGTCA-CTCACTCGG-CCTTAG-TCTGCTTTTATCGCCCGT-TCATATTAGTTT--TGCCCAATTTGCGGCA--ACTTCTGGTGTTTCCCCAA-------TT--CTTGTCACGCACGAGCTG---------TCTGC---CAAAT--A-----ATCGAGTGGAATCGAG------------------------
droRho1 scf7180000779318:86334-86621 - T----------------------------------------------------------------------------------G----------------GTGGGA------GCTCTGAACAATTACTTAGCTGGC---------ATCTTCAACGCCTCGGTGCCT-------------------------C------TGGTCTCGTCTTTCC-ACATTCTCATTAATTACACGCAGCTCTAATTAGGATGTAACGGAATAGCGAAAGGA-TT-AGCCGCAGCT---TTACCTGAATG-----------CCTTC-CGAT---ATGAGTCA-----GTCGG-CTTTAT-CCCGCTTTTATCGCCCAT-TCATATTACTTT--TGCCCAATTTGCGGAA--GCTTCTGGTATTTCCCCAA-------TT--CTTGTCACGCACGAGCTG---------CCTGC---CAAAT--A-----ATCGAGTGGAATCGAG------------------------
droFic1 scf7180000453215:817541-817870 - ---------------------------------------------------TTCTCGCAGTGTGCACACGCACGTCAGTTGGTG----------------GATTGA------GCTGCCGACAATTACTTAGCTGGC---------ATCTTCAACACTTCGGTGCCA-------------------------T--G--GGGGCATCGTCTTTCA-GCATTCTCATTAATTACACGCCGCACTAATTAGCCTGTAACGGAATAGCGAAAGGA-TT-ATCTCCTTCGTTCCCACCTGGATGG-------ATGCCTTCG--CA---GTGAGTCA-----CTCGG-CTTTAT-CCCGCTTTAATCGTCCGT-TTGTATTACTTT--TGCCCGATTTGCGGCA--GCTTCTGGTATTTCCCCAA----AATTT--ATTGTCACGCACGAGCTG---------CTGGC---AGAAT--A-----ATCGAGTGGAATCGCG------------------------
droKik1 scf7180000302411:217049-217360 + ---------------------------------------------------TTCTTACAGTGAACCCACGCATC--AGT----GGA---------TT----TGGGAGCCATGGCACTCAACAATTACTTAGCTGA--------GCGTCTTTAACACCTCCGGGCCA-------------------------AAGGGGAGGGGCTGGTCTTTCA-GCATTCTCATTAATTACACGCCAAACTAATTAAGCTGTAAGGAAATAGGAAAAGGA-TT-AATCGCAGCAGCTGCACCTGCGTG-----------TG-------C---GTGAGTCA-----CTCCGATGTTAT-CCCACTAT--------AT-CCGTATTATTTG--CGCCCAATTTGCGCCA--GCTTCTGGTATTTCCCCAG-------TT--CTTGTCACGCACGAGCTGCTGCTGATGCTGGC---CAA----------------------C-GG------------------------
droAna3 scaffold_13266:14609854-14610253 - ATGTTCAAATTTATAAACAAGTAATAAT-TAC--ACCCACCTTGGGCATGTTTTTCTCAGTGCACCCAAGCATCAAAGT----GGGCTTTGGTGTGTAG-ACAAGA------CCACTCAACAATTACTTAGCTGGC---------ATCTTTAACACCTCAGCTCCTGGGAGAGTGAGAAGTGGAGGGAGCTC------TTGTCTCATCTTTCA-GCATTCTCATTAATTACACGCCGCACTAATTAGACTGTAACCGAATAGAAAAAGGA-TT-ATTCACAGAT---ACAGATA------------------------------------GCTGACTCAG-C------CCCTATTTAATCCGCAAT-CCATATTATTTT--TGCCCAATTTGCGCCG--GATTCTGGTATTTCCCCAA-------TT--TTTGTCACGCACGAGCA----------CCCC----------CA-----ATCGAGTGGAATCATGGAAGTGAGCATGGAGTGGACCCCA
droBip1 scf7180000396428:216866-217262 + ATGTTTAAGCTTATAAACAAGTAGTA---TTTAGATCCACTTTGGGTGTGTTTGTCTCAGTGCACCCACGCATCAAAGT----GGGCTTTGGTGTGTAG-ACAAGA------CCACTCAACAATTACTTAGCTGGC---------ATCTTCAACACCTCAGCTCCTGGGAGAGTGGGAAGTGGAAGGAGGTC------ATGTCTCATCTTTCA-GCATTCTCATTAATTACACGCCACACTAATTAGACTGTAACCGAATAGAAAAAAGGATT-ATTCACAGA-----CAC-TGATA---------------------------------GCTGACTCAG-C------CCCTATTTAATCCGCAAT-CCATATTATTTT--TGTCCAATTTGCGCCG--GATTCTGGTATTTCCCCAA-------TT--TTTGTCACGCACGAGCT----------CCTC----C------A-----ATCGAGTGGAATCATGGGAGTGAGCATGGAGTGGAG----
dp5 3:4411789-4412047 + --------------------------------------------------------------------------------------------------------GA------GCACTCAACAATTACTTAGCAGCC---------AT--TCACCACCTCCGTTTCA-------------------------C--G--AGGGGCTCGTCTTTCA-ACAAGCTCATTAATTGCACGCCGCACTAATG----------GGAACAGCTAAAGGA-TTTATTCTCT--C---TCACCTGGTTACCTGTTTGACGTCTTC--AGACTG--------GCTGACTCAT-C------CCCTTCCTATACTCT-ATTCGAGATTGT-----------------------TCTTCTGGTATTTCCCCAA-------TT--GTAGTCACGCACGAGCTG---------ATG-----CACTCGCA-----ATCAACCGGAATCGGGGT----------------------
droPer2 scaffold_2:4599569-4599820 + --------------------------------------------------------------------------------------------------------GA------GCACTCAACAATTACTTAGCAGCC---------AT--TCACCACCTCCGTTTCA-------------------------C--G--AGGGGCTCGTGTTTCA-ACAAGCTCATTAATTGCACGCCGCACTAATGA----------GAACAGCTAAAGGA-TTTATTCTCT--C---TCACCGGGATATCTGTTTG-------G--ATACTG--------GCTGACTCAT-C------CCCTTCCTATACTCT-ATTCGAGATTGT-----------------------TCTTCTGGTATTTCCCCAA-------TT--GAAGTCACGCACGAGCTG---------ATG-----CACTCGCA-----ATCAACCGGAATCGGGGT----------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATGTCACACTTTCTGAACGGACAGTAAGTTCCAGGCTTAC-----------TTTTCGCAGTGTAAGCATACATGACAGCTTGTGAG---------GTTG-GTAGGA------GCACTCAACAATTACTTAG----------------------CACCTCGGTGTCA-------------------------A--G--GGGGTCTCGTCTTTCA-GCATTCTCATTAATTACACGCCGCACTAATTAGGCTGTAACGGAATAGCGAAAGGA-TT-ACCCGGAGTA---TCACCTGGTTG-----------CCGGTCC--T---ATGATTTA-----CTCTG-CTTTAG-CCCGCTCTAATCTGCCAT-CCGTAATGCTTT--CGCCAAATTTACGGCTATACTTCTGGTATTTCCCCAG-------TTGTCTTGTCACGCACGAGCG----------CTGTT---CAAACAAA-----ATCGAGTGGAATCGAG------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........TCTGAACGGACAGTAAGTTCCAGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26129.0029000000000000272000
..........TTCTGAACGGACAGTAAGTTCCAGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27114.0014000000000000140000
...........TCTGAACGGACAGTAAGTTCCAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2515.00500000000000050000
.........................................................................................................................................................................................................................................................TGTAACGGAATAGCGAAAGGA-TT-ACCC...............................................................................................................................................................................................................................................2715.00500000000000050000
...........TCTGAACGGACAGTAAGTTCCAGGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.00400000000000040000
.............TGAACGGACAGTAAGTTCCAGGCTTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.00300000000000030000
.................................................................................................TG-GTAGGA------GCACTCAACAATTACTT....................................................................................................................................................................................................................................................................................................................................................................................................2513.00300000000000030000
.............................................................................................................................................................................................................................................CACTAATTAGGCTGTAACGGAATAGCGA............................................................................................................................................................................................................................................................2813.00300000000000030000
................................................................................................................................................................................................................................................TAATTAGGCTGTAACGGAATAGCGAA...........................................................................................................................................................................................................................................................2613.00300000000000030000
.............TGAACGGACAGTAAGTTCCAGGCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200000000000020000
............................................................................................................................................................................................................................................................AACGGAATAGCGAAAGGA-TT-ACCCGG.............................................................................................................................................................................................................................................2612.00200000000000020000
.........TTTCTGAACGGACAGTAAGTTCCAGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200000000000020000
................................................................................................................................................................................................................................................TAATTAGGCTGTAACGGAATAGA..............................................................................................................................................................................................................................................................2312.00200000000000020000
............................................................................................................................................................................................................................................GCACTAATTAGGCTGTAACGG....................................................................................................................................................................................................................................................................2112.00200000000000020000
...................................................................................................................................................................................................................................................TTAGGCTGTAACGGAATAGCGAAAGGA-T.....................................................................................................................................................................................................................................................2812.00200000000000020000
.........................................................................................................................................................................................................................................................TGTAACGGAATAGCGAAAGGA-TT-ACC................................................................................................................................................................................................................................................2612.00200000000000020000
.............................................................................................................................................................TCGGTGTCA-------------------------A--G--GGGGTCTCGTCA....................................................................................................................................................................................................................................................................................................................2311.00100000000000010000
...........TCTGAACGGACAGTAAGTTCCAGGCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
...........................................................................................................................................................................................................................................CGCACTAATTAGGCTGTAACGGAATAG...............................................................................................................................................................................................................................................................2711.00100000000000010000
.TGTCACACTTTCTGAACGGACAGTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
.....................................................................................................................................................................................................................................................................................CGGAGTA---TCACCTGGTTG-----------CCGGTC..........................................................................................................................................................................................................2411.00100000000000010000
...........................................................................................................................................................................................................................................CGCACTAATTAGGCTGTAACGGAAA.................................................................................................................................................................................................................................................................2511.00100000000000010000
......................................................................................................................................................................................................................................................................................GGAGTA---TCACCTGGTTG-----------CCGGTCC--T---A..................................................................................................................................................................................................2611.00100000000000010000
....................................................................................................................................................................................................................................................TAGGCTGTAACGGAATAGCGAAAGGA-......................................................................................................................................................................................................................................................2611.00100000000000010000
................................................................................................................................................................................................................................................TAATTAGGCTGTAACGGAATAGAA.............................................................................................................................................................................................................................................................2411.00100000000000010000
.........................................................................................................................................................................................................................................................TGTAACGGAATAGCGAAAGGA-TT-AC.................................................................................................................................................................................................................................................2511.00100000000000010000
.TGTCACACTTTCTGAACGGACAGTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
.........................................................................................................................................................................................................................................................TGTAACGGAATAGCGAAAGGA-TT-AAA................................................................................................................................................................................................................................................2611.00100000000000010000
......CACTTTCTGAACGGACAGTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000010000
......................................................................................................AGGA------GCACTCAACAATTACTTAG----------------------CAC.........................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
.............TGAACGGACAGTAAGTTCCAGGCTTAC-----------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
.........................................................................................................................................................................................................................................................TGTAACGGAATAGCGAAAGGA-TT-A..................................................................................................................................................................................................................................................2411.00100000000000010000
................................................................................................................................................................................................................................................TAATTAGGCTGTAACGGAATAGCGAAAA.........................................................................................................................................................................................................................................................2811.00100000000000010000
.............TGAACGGACAGTAAGTTCCAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000010000
...................................................................................................................................................................................................................CA-GCATTCTCATTAATTACACGC..........................................................................................................................................................................................................................................................................................2311.00100000000000010000
.....................................................................................................................................................................................................................................................................................CGGAGTA---TCACCTGGTTG-----------CCGGT...........................................................................................................................................................................................................2311.00100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCACGAGCG----------CTGTT---CAAACAAA-----AT......................................2611.00100000000000010000
........................................................................................................................................................................................................................................CGCCGCACTAATTAGGCTGTAACGGAAA.................................................................................................................................................................................................................................................................2811.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................AG-CCCGCTCTAATCTGCCAT-CCGTAAAA..............................................................................................................................................2811.00100000000000010000
...............................................................................................................................................................................................................................................CTAATTAGGCTGTAACGGAAT.................................................................................................................................................................................................................................................................2111.00100000000000010000
..........TTCTGAACGGACAGTAAGTTCCAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
............................................................................................................................................................CTCGGTGTCA-------------------------A--G--GGGGTCTCGT......................................................................................................................................................................................................................................................................................................................2211.00100000000000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---CAAACAAA-----ATCGAGTGGAATCGAG------------------------2511.00100000000000010000
droSec2
ATGTAACACTTTGTGAACGGACAGTAAGTTCCAGGCTTAC-----------TTTTCGCAGTGTAAGCATACATGACAGCTAGTGGG---------GTTG-GTAGGA------GCACTCAACAATTACTTAG----------------------CACCTCGGTGTCA-------------------------A--G--GGGGTCTCGTCTTTCA-GCATTCTCATTAATTACACGCCGCACTAATTAGGCTGTAATGGAATAGCGAAAGGA-TT-ACCCGGAGTA---TCACCTGGTTG-----------CCGGTCC--T---ATGATTCA-----CTCGG-CTTTAG-CCCGCTCTAATCTGCCAT-CCGTAATGCTTT--CGCCAAATTTACGGCTATACTTCTGGTATTTCCCCAG-------TTGTCTTGTCACGCGCGAGCG----------CTGTT---CAAACAAA-----ATCGAGTGGAATCGAG------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
ATGTAACACTTTGCGAACGAACACTAAGTTCCAGGGTTAC-----------TTTTCGCAGTGTAAGCATGCATGACAGCTAGTG-----------GTTGGGTATGG------GCACTCAACAATTACTTAG----------------------CACCTCGGTGTCA-------------------------A--G--GGGGTCTCGTCTTTCA-GCATTCTCATTAATTACACGCCGCACTAATTAGGCTGTTACAGAATAGCGAAAGGA-TT-ACCCGGAGTA---TCACCTGGTTG-----------CCGGTCC--T---ATGATTCA-----TTCAG-CTTTAG-CCGGCGCTAATCTGCCAT-CCGTAATGCTTT--CGCCAAATTTACGGCAATACTTCTGGTATTTCCCCAG-------TTGTCTTGTCACGCACGAGCG----------CTGTT---CAAATAAA-----ATCGAGTGGAATCGAG------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
No Reads
droEre2
ACGTGACAGTCTTTGAG----CAGCAAATGCCCAGCCTAC-----------TTCTCGCAGTGTACACATGCATGGCAGCTGGTG-----------GTTG-GTAGGA------GCACTCAACAATTACTTAGCTGGC---------ATCTTCAACACCTCGGTGTCA-------------------------A--G---GGGTCTCGTCTTTCA-GCATTCTCATTAATTACACGCCGCACTAATTAGGCTGTAACGGCATGGGGAAAGGA-TT-ACTCGGAGCA---TCACCTGGTTG-----------CCGTTCC--A---GTGAATCA-----CTCGG-TTCTAG-CCCGCGCTTATCTGCCAT-CCGTAATGCTTTTTCGCCCAATTTGCGGCAATACTTCTGGTATTTCCCCAA-------CT--CTTGTCACGCACCAGCT----------CTGCC---CAAATAAA-----ATCGAGTGGAATCGAG------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
AGGTGGCAGCTTTTGAA----CAGTGAACTCCAAGCCCAC-----------TTCTCGCAGTGTAAACATGCATGACAGCTGGTG-----------GTTG-GTGGTA------GCACTCAACAATTACTTAGCTGGC---------ATCTTCAACACCTCGGTGTCA-------------------------A--G--GGGGTCTCGTCTTTCA-GCATTGCCATTAATTACACGCCGCACTAATTAGGCTGTAACGGAATAGCGAAAGGA-TT-ACACGGAGCA---TCACCTGGTTG-----------CCGGTTC--T---ATGATTCA-----CTCGG-CTCTAG-TCAGTGTTAATCTGCCAT-CGGTAATGGTTT--TGCCCAATTTACGGCTATACTTCTGGTATTTCCCCAG-------TT--CTTGTCACGCACGAGCG----------CTGCT---CGAATAAA-----ATCGAGTGGCATCGAG------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
AT-------------------------------------------------TTCTCTCAGTGTAGCCACACATGACAGCTGGTG----------------GTGTGA------GCACTCAACAATTACTTAGCTGGC---------ATCTTCAACACTTCGGTGCCA-------------------------TAGG--GGGGTCTCGTCTTTCA-GCATTCTCATTAATTACACGCCGCACTAATTAGGATGTAACGGAATAGCGAAAGGA-TT-ATCCGCATCC---TCACCTGGATG------------------GAT---GTGAGTCA-----CCCGAACTTTAGCCCCGCTTTAATCTCTCAT-CCATATTATTTT--TGCCCAATTTGCGTCA--GCTTCTGGTATTTCCCCAAACAAAAATT--CTTGTCACGCACGAGCG----------CTGTC---CAAATAAA-----ATCGAGTGGAATCGAG------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
---------------------------------------------------TTCTGGCAGTGTACACATGCATGACAGCTGGTG----------------GTGGGA------GCACTCAACAATTACTTAGCAGGC---------ATCTTCAACACTTCGGTGCCA-------------------------G--G--GGGGTCTCGTCTTTCA-GCATTCTCATTAATTACTCGCCGCACTAATTAGGCTGTAACGGAATAGCGAAAGGA-TT-ATCCGCAGCAGCCTCACCTGGAAG-----------CCTTC--GAT---TTGAGTCA-----CCCGG-CTTTGG-CCCGCTTTAATCT-CCGT-CCGTATTATTTG--TGCCCCATTTGCGCCA--ACTTCTGGTGTTTCCCCAA-------AT--CTTGTCACGCACGAGCG----------CTGCC---CAAACAAAAAA--AATTAATAGAATCGAG------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AT-------------------------------------------------TTCTCGCAGTGTACACATGCATGACAGCTGGTG----------------GTGGGA------GCACTCAACAATTACTTAGCTGGCATCCTGAACATCCTCAACACCTCGGTGCCA-------------------------T--G--AGGGTCTCGTCTTTCA-GCATTCTCATTAATTACACGCCGCACTAATTAGGCTGTAACGGAATAGCGAAAGGA-TT-ATCCGCAGCCTCATCACCTGCAAG-----------CCCTTG--AT---ATGAGTCA-----CTCAG-CTTTGG-CCCGCTTTAATCTCGCAT-CCATATTATTTT--TGCCCAATTTGCGCCC--ATTTCTGGTATTTCCCCAA-------TT--CATGTCACGCACGAGCG----------CTGCTTGGAAAATAAAAAAGAATCGAGTGGAATCGAG------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
---------------------------------------------------TTCTCCCAGTGCACCCACACATGTCAGTTGGTG----------------GTGGGA------GCACTCAACAATTACTTAGCTGGC---------ATCTTCAACGCCTCGGTGCCT-------------------------C------TGGTCTCGCCTTTCATGCATTATCATTAATTACACGCCGCTCTAATTAGGATGTAACGGAATAGCGAAAGGA-TT-ATCCGCTGCT---TTACCTGAATG-----------CCTTC--GAT---GTGAGTCA-CTCACTCGG-CCTTAG-TCTGCTTTTATCGCCCGT-TCATATTAGTTT--TGCCCAATTTGCGGCA--ACTTCTGGTGTTTCCCCAA-------TT--CTTGTCACGCACGAGCTG---------TCTGC---CAAAT--A-----ATCGAGTGGAATCGAG------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
T----------------------------------------------------------------------------------G----------------GTGGGA------GCTCTGAACAATTACTTAGCTGGC---------ATCTTCAACGCCTCGGTGCCT-------------------------C------TGGTCTCGTCTTTCC-ACATTCTCATTAATTACACGCAGCTCTAATTAGGATGTAACGGAATAGCGAAAGGA-TT-AGCCGCAGCT---TTACCTGAATG-----------CCTTC-CGAT---ATGAGTCA-----GTCGG-CTTTAT-CCCGCTTTTATCGCCCAT-TCATATTACTTT--TGCCCAATTTGCGGAA--GCTTCTGGTATTTCCCCAA-------TT--CTTGTCACGCACGAGCTG---------CCTGC---CAAAT--A-----ATCGAGTGGAATCGAG------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
---------------------------------------------------TTCTCGCAGTGTGCACACGCACGTCAGTTGGTG----------------GATTGA------GCTGCCGACAATTACTTAGCTGGC---------ATCTTCAACACTTCGGTGCCA-------------------------T--G--GGGGCATCGTCTTTCA-GCATTCTCATTAATTACACGCCGCACTAATTAGCCTGTAACGGAATAGCGAAAGGA-TT-ATCTCCTTCGTTCCCACCTGGATGG-------ATGCCTTCG--CA---GTGAGTCA-----CTCGG-CTTTAT-CCCGCTTTAATCGTCCGT-TTGTATTACTTT--TGCCCGATTTGCGGCA--GCTTCTGGTATTTCCCCAA----AATTT--ATTGTCACGCACGAGCTG---------CTGGC---AGAAT--A-----ATCGAGTGGAATCGCG------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
---------------------------------------------------TTCTTACAGTGAACCCACGCATC--AGT----GGA---------TT----TGGGAGCCATGGCACTCAACAATTACTTAGCTGA--------GCGTCTTTAACACCTCCGGGCCA-------------------------AAGGGGAGGGGCTGGTCTTTCA-GCATTCTCATTAATTACACGCCAAACTAATTAAGCTGTAAGGAAATAGGAAAAGGA-TT-AATCGCAGCAGCTGCACCTGCGTG-----------TG-------C---GTGAGTCA-----CTCCGATGTTAT-CCCACTAT--------AT-CCGTATTATTTG--CGCCCAATTTGCGCCA--GCTTCTGGTATTTCCCCAG-------TT--CTTGTCACGCACGAGCTGCTGCTGATGCTGGC---CAA----------------------C-GG------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
ATGTTCAAATTTATAAACAAGTAATAAT-TAC--ACCCACCTTGGGCATGTTTTTCTCAGTGCACCCAAGCATCAAAGT----GGGCTTTGGTGTGTAG-ACAAGA------CCACTCAACAATTACTTAGCTGGC---------ATCTTTAACACCTCAGCTCCTGGGAGAGTGAGAAGTGGAGGGAGCTC------TTGTCTCATCTTTCA-GCATTCTCATTAATTACACGCCGCACTAATTAGACTGTAACCGAATAGAAAAAGGA-TT-ATTCACAGAT---ACAGATA------------------------------------GCTGACTCAG-C------CCCTATTTAATCCGCAAT-CCATATTATTTT--TGCCCAATTTGCGCCG--GATTCTGGTATTTCCCCAA-------TT--TTTGTCACGCACGAGCA----------CCCC----------CA-----ATCGAGTGGAATCATGGAAGTGAGCATGGAGTGGACCCCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ATGTTTAAGCTTATAAACAAGTAGTA---TTTAGATCCACTTTGGGTGTGTTTGTCTCAGTGCACCCACGCATCAAAGT----GGGCTTTGGTGTGTAG-ACAAGA------CCACTCAACAATTACTTAGCTGGC---------ATCTTCAACACCTCAGCTCCTGGGAGAGTGGGAAGTGGAAGGAGGTC------ATGTCTCATCTTTCA-GCATTCTCATTAATTACACGCCACACTAATTAGACTGTAACCGAATAGAAAAAAGGATT-ATTCACAGA-----CAC-TGATA---------------------------------GCTGACTCAG-C------CCCTATTTAATCCGCAAT-CCATATTATTTT--TGTCCAATTTGCGCCG--GATTCTGGTATTTCCCCAA-------TT--TTTGTCACGCACGAGCT----------CCTC----C------A-----ATCGAGTGGAATCATGGGAGTGAGCATGGAGTGGAG----SizeHit CountTotal NormTotal
No Reads
dp5
--------------------------------------------------------------------------------------------------------GA------GCACTCAACAATTACTTAGCAGCC---------AT--TCACCACCTCCGTTTCA-------------------------C--G--AGGGGCTCGTCTTTCA-ACAAGCTCATTAATTGCACGCCGCACTAATG----------GGAACAGCTAAAGGA-TTTATTCTCT--C---TCACCTGGTTACCTGTTTGACGTCTTC--AGACTG--------GCTGACTCAT-C------CCCTTCCTATACTCT-ATTCGAGATTGT-----------------------TCTTCTGGTATTTCCCCAA-------TT--GTAGTCACGCACGAGCTG---------ATG-----CACTCGCA-----ATCAACCGGAATCGGGGT----------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
--------------------------------------------------------------------------------------------------------GA------GCACTCAACAATTACTTAGCAGCC---------AT--TCACCACCTCCGTTTCA-------------------------C--G--AGGGGCTCGTGTTTCA-ACAAGCTCATTAATTGCACGCCGCACTAATGA----------GAACAGCTAAAGGA-TTTATTCTCT--C---TCACCGGGATATCTGTTTG-------G--ATACTG--------GCTGACTCAT-C------CCCTTCCTATACTCT-ATTCGAGATTGT-----------------------TCTTCTGGTATTTCCCCAA-------TT--GAAGTCACGCACGAGCTG---------ATG-----CACTCGCA-----ATCAACCGGAATCGGGGT----------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/18/2015 at 01:49 PM