ID:dsi_27657 |
Coordinate:3l:11516207-11516356 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -12.9 | -12.8 | -12.7 |
 |
 |
 |
CDS [3l_11516357_11516380_-]; five_prime_UTR [3l_11516381_11516706_-]; exon [3l_11516357_11516706_-]; intron [3l_11513407_11516356_-]; exon [3l_11514846_11516616_-]; five_prime_UTR [3l_11515945_11516616_-]
No Repeatable elements found
| ########################################################################################################################################################################################################################################################## GCGACTGCATTGATTTTCCATTGGCCATGGCCCGCATCGTTGAGAGCAATGTAAGTTAAATGCAACTAATTCCATTCGCTGGTATGTTTATATAACTCCTCGATTCGCATCACCACCTGCCCCGCCCACATAAATCTAGTGCCATCCCCCCTCACATTTCATAGTTGTCAGCGATGATCATTTTTCTCTTGGCCAAATGCCTAATGCCTCGGTGGTTTTGCATTCTCCCAAATTGTTGGCCAACAGTGAT **************************************************...(((((.(((.(((.....(((.....)))...)))))).))))).........(((........)))....................((((..............((((.(((...))).))))............)))).......************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M023 head |
M024 male body |
M053 female body |
O002 Head |
SRR553488 RT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
SRR553486 Makindu_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................................................................................................................................................................................................TTCTCCCAAATTGTTGGC.......... | 18 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................................CATTTTTCTCTTGGCCAAA..................................................... | 19 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..GACTGCATTGATTTTCCATTGGCCATG............................................................................................................................................................................................................................. | 27 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ............................GGCCCGCATCGTTGAGAGC........................................................................................................................................................................................................... | 19 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .............................GCCCGCATCGTTGAGAGCAATG....................................................................................................................................................................................................... | 22 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................................ATGCCTCGGTGGTTTTGCATTC......................... | 22 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ............................................................................................TAACTTCTCGAATCGCA............................................................................................................................................. | 17 | 2 | 20 | 0.20 | 4 | 0 | 0 | 0 | 0 | 4 | 0 | 0 |
| ......................................................................................................................................................................................................GACTAATGCCTCGGTGGCG................................. | 19 | 3 | 12 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ...........................................................................................ATAACTTCTCGAATCGCATG........................................................................................................................................... | 20 | 3 | 12 | 0.08 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..........................................................................................GATAACTTCTCGAATCGCAT............................................................................................................................................ | 20 | 3 | 14 | 0.07 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .........................................................................................TTATAACTTCTCGAATCGC.............................................................................................................................................. | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ..........................................................................................GATAACTGCTCGAATCGCA............................................................................................................................................. | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
|
CGCTGACGTAACTAAAAGGTAACCGGTACCGGGCGTAGCAACTCTCGTTACATTCAATTTACGTTGATTAAGGTAAGCGACCATACAAATATATTGAGGAGCTAAGCGTAGTGGTGGACGGGGCGGGTGTATTTAGATCACGGTAGGGGGGAGTGTAAAGTATCAACAGTCGCTACTAGTAAAAAGAGAACCGGTTTACGGATTACGGAGCCACCAAAACGTAAGAGGGTTTAACAACCGGTTGTCACTA
**************************************************...(((((.(((.(((.....(((.....)))...)))))).))))).........(((........)))....................((((..............((((.(((...))).))))............)))).......************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M023 head |
SRR902009 testis |
M024 male body |
SRR618934 dsim w501 ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................................................................................................AGTCGCTACTAGTAAAAAGAG.............................................................. | 21 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................TGTAAAGTATCAACAGTCGCTG........................................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................TTTACCGGGCGTAGCAACTCTCG........................................................................................................................................................................................................... | 23 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................................TCGCTACTAGTAAAAAGAGA............................................................. | 20 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..................................................................................................................TGGACGGGGCGGGTGTATTT.................................................................................................................... | 20 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................................TGGCAACTAGTAAAAAGAGAAA........................................................... | 22 | 3 | 2 | 0.50 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .............................................................................................TTGAGGAGCTAAGAGT............................................................................................................................................. | 16 | 1 | 6 | 0.33 | 2 | 0 | 0 | 0 | 2 | 0 | 0 |
| ...............................................................................................................................................TAGGGGCGAGTCTAAAGGAT....................................................................................... | 20 | 3 | 4 | 0.25 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| ....................................................................................................................................................................................AAAAAGATAACCGGTTT..................................................... | 17 | 1 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| .......................................................................................................................................................................ACTCGCTACTAGTAA.................................................................... | 15 | 1 | 8 | 0.13 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| ..........................TACCGGGCGTAGCTAC................................................................................................................................................................................................................ | 16 | 1 | 12 | 0.08 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ........................................................................................................................GGGCGCGTGTATTTA................................................................................................................... | 15 | 1 | 18 | 0.06 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| .............................................................................................................................GGTGTATCCAGATCAC............................................................................................................. | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
Generated: 04/24/2015 at 10:24 AM